FC920451

Overview
NameFC920451
Unique NameFC920451
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920451 vs. ExPASy Swiss-Prot
Match: RRP31_ARATH (30S ribosomal protein 3-1, chloroplastic OS=Arabidopsis thaliana GN=At1g68590 PE=1 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.246e-42
Identity = 98/175 (56.00%), Postives = 115/175 (65.71%), Query Frame = 2
Query:   68 MLSSMALQSTVNGAFTTRSSFPSQKLTVKPTKTT-ILHQNRTKPISRNQRLVXXXXXXXXXXXXXXXXXXXXXXXXPVETKKAGVSVKQLEKPRLVLKFIWMEKNIGLALDQTIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQATDIINLWQQSGGNLTT 589
            M+SSMAL ST     +  SSF SQ   +  T +  + H   TKPIS  ++++                        P +T K    VK  EK R+VLKF+WMEKNIGL LDQ +PG+GTIPLS YFFWPRKDAWEELK+TLE+KPWISQK MIILLNQATDIINLWQQSGGNLT+
Sbjct:    1 MMSSMALSST-----SLCSSFISQHPKLSITASPPLFHTQTTKPISVKRKIITLAAPETLTAETVTGIDTSDNT--PQQTIKV---VKPDEKSRVVLKFVWMEKNIGLGLDQHVPGHGTIPLSPYFFWPRKDAWEELKSTLEAKPWISQKKMIILLNQATDIINLWQQSGGNLTS 165          
BLAST of FC920451 vs. ExPASy Swiss-Prot
Match: RRP3_SPIOL (30S ribosomal protein 3, chloroplastic OS=Spinacia oleracea GN=PSRP3 PE=1 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 7.231e-42
Identity = 93/178 (52.25%), Postives = 109/178 (61.24%), Query Frame = 2
Query:   77 SMALQSTVNGAFTTRSSFPSQKLTVKPTKTTILHQNRT-------KPISRNQRLVXXXXXXXXXXXXXXXXXXXXXXXXPVETKKAGVSVKQLEKPRLVLKFIWMEKNIGLALDQTIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQATDIINLWQQSGGNLTT 589
            SMA+Q  +N A    S + S KL++KP KT      +          + +                              V  +K  V VK ++KPRLVLKFIWMEKNIGLALDQTIPG+GT+PLS Y+FWPRKDAWEELK  LE+KPWISQK MIILLNQATDIINLWQQSGGNL +
Sbjct:    3 SMAVQPNIN-AIAKPSIYQSPKLSLKPFKTPAFANPKPFFSSPSFSQLKKKNNWSLFVAPETISDVAIMGNEVDIDDDLLVNKEKLKVLVKPMDKPRLVLKFIWMEKNIGLALDQTIPGHGTVPLSPYYFWPRKDAWEELKVLLENKPWISQKQMIILLNQATDIINLWQQSGGNLAS 179          
BLAST of FC920451 vs. ExPASy Swiss-Prot
Match: RRP32_ARATH (30S ribosomal protein 3-2, chloroplastic OS=Arabidopsis thaliana GN=At5g15760 PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.667e-38
Identity = 87/184 (47.28%), Postives = 109/184 (59.24%), Query Frame = 2
Query:   80 MALQSTVNGAFTTRSSFPSQKLTVKPTKTTILHQNRTKPISR---------------NQRLVXXXXXXXXXXXXXXXXXXXXXXXXPVETKKAGVSVKQLEKPRLVLKFIWMEKNIGLALDQTIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQATDIINLWQQSGGNLT 586
            MA+Q+  + +F  R++ PSQKL+ KP     L   + KP SR                   +                        P+  KK  V VK LEKP++VLKF+WM+K+IG+ALD  IPG+GTIPLS Y+FWPRKDAWEELKT LESKPWIS+   + LLNQATDIINLWQ SGG+L+
Sbjct:    1 MAVQANQSASFGFRTASPSQKLSSKPIAHISL-STKLKPSSRPSLSCSTWNQGQIPARHSCINPGIFAYPPSNLTFSHELPESESPPLGKKKMRVLVKPLEKPKVVLKFVWMQKDIGVALDHMIPGFGTIPLSPYYFWPRKDAWEELKTLLESKPWISELHRVFLLNQATDIINLWQSSGGDLS 183          
BLAST of FC920451 vs. ExPASy Swiss-Prot
Match: RRP3_HORVU (30S ribosomal protein 3, chloroplastic OS=Hordeum vulgare GN=PSRP3 PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.476e-36
Identity = 70/98 (71.43%), Postives = 82/98 (83.67%), Query Frame = 2
Query:  296 VETKKAGVSVKQLEKPRLVLKFIWMEKNIGLALDQTIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQATDIINLWQQSGGNLTT 589
            VE+++  V V + + P LVLKFIWMEKNIG+ALDQ +PG G+IPLS Y+FWPRKDAWEEL+  LE K WISQK MIILLNQATDIINLWQQ GG+L+T
Sbjct:   84 VESEEYKVEVPEKQDPMLVLKFIWMEKNIGIALDQMVPGVGSIPLSPYYFWPRKDAWEELRAKLEEKEWISQKQMIILLNQATDIINLWQQGGGSLST 181          
BLAST of FC920451 vs. ExPASy Swiss-Prot
Match: RRP3_CYAP4 (Probable 30S ribosomal protein PSRP-3 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=Cyan7425_0465 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.731e-22
Identity = 46/87 (52.87%), Postives = 63/87 (72.41%), Query Frame = 2
Query:  320 SVKQLEKPRLVLKFIWMEKNIGLALDQTIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQATDIINLWQQSGGN 580
            ++ ++   + +LK +W++ N+ LA+DQ + G GT PL+ YFFWPR DAWE+LKT LE K WIS+   I LLN+ATDIIN WQ+ G N
Sbjct:    5 TILEVSLSQFILKVLWLDSNVALAVDQVV-GKGTSPLTSYFFWPRADAWEQLKTELEKKTWISEADRIALLNRATDIINYWQEEGRN 90          
BLAST of FC920451 vs. ExPASy Swiss-Prot
Match: RRP3_PORYE (Probable 30S ribosomal protein 3, chloroplastic OS=Porphyra yezoensis GN=ycf65 PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.312e-22
Identity = 47/86 (54.65%), Postives = 62/86 (72.09%), Query Frame = 2
Query:  317 VSVKQLEKPRLVLKFIWMEKNIGLALDQTIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQATDIINLWQQSG 574
            + +K L K    LK +W+E NI +A+DQ + G GT PL+ YFFWPR DAWEELK  LESKPWI+++  I LLN+ T++IN WQ+ G
Sbjct:    1 MEIKNLSK--FTLKVLWLENNIAIAIDQIV-GNGTSPLTSYFFWPRNDAWEELKAELESKPWIAERDRIELLNKTTEVINYWQEEG 83          
BLAST of FC920451 vs. ExPASy Swiss-Prot
Match: RRP3_PORPU (Probable 30S ribosomal protein 3, chloroplastic OS=Porphyra purpurea GN=ycf65 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.852e-21
Identity = 44/77 (57.14%), Postives = 58/77 (75.32%), Query Frame = 2
Query:  344 RLVLKFIWMEKNIGLALDQTIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQATDIINLWQQSG 574
            +  LK +W+E NI +A+DQ + G GT PL+ YFFWPR DAWEELK  LESKPWI+++  I LLN+ T++IN WQ+ G
Sbjct:    3 KFTLKVLWLENNIAIAIDQIV-GNGTSPLTSYFFWPRNDAWEELKAELESKPWIAERDRIELLNKTTEVINYWQEEG 78          
BLAST of FC920451 vs. ExPASy Swiss-Prot
Match: RRP3_THEEB (Probable 30S ribosomal protein PSRP-3 OS=Thermosynechococcus elongatus (strain BP-1) GN=tlr0301 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.418e-21
Identity = 46/88 (52.27%), Postives = 63/88 (71.59%), Query Frame = 2
Query:  317 VSVKQLEKPRLVLKFIWMEKNIGLALDQTIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQATDIINLWQQSGGN 580
            +S ++LE  R  L+ +W+EK++ +A+DQ + G GT PL+ YFFWPR DAWE LK  LE K WI++   I LLN+AT+IIN WQ+ G N
Sbjct:    3 ISFRRLELSRFTLRVLWLEKDVAIAVDQIV-GKGTSPLTSYFFWPRTDAWELLKAELEKKSWITEAERIELLNRATEIINYWQEEGKN 89          
BLAST of FC920451 vs. ExPASy Swiss-Prot
Match: RRP3_ANAVT (Probable 30S ribosomal protein PSRP-3 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=Ava_3866 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.158e-21
Identity = 44/79 (55.70%), Postives = 60/79 (75.95%), Query Frame = 2
Query:  344 RLVLKFIWMEKNIGLALDQTIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQATDIINLWQQSGGN 580
            + +LK +W+++N+ LA+DQ + G GT PL++YFFWPR DAWEELK  LESK WIS    + LLN+AT++IN WQ+ G N
Sbjct:    3 KFILKILWLDENVALAVDQVV-GKGTSPLTKYFFWPRNDAWEELKKELESKHWISDLDRVELLNKATEVINYWQEEGRN 80          
BLAST of FC920451 vs. ExPASy Swiss-Prot
Match: RRP3_ANASP (Probable 30S ribosomal protein PSRP-3 OS=Anabaena sp. (strain PCC 7120) GN=asr3168 PE=3 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 3.158e-21
Identity = 44/79 (55.70%), Postives = 60/79 (75.95%), Query Frame = 2
Query:  344 RLVLKFIWMEKNIGLALDQTIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQATDIINLWQQSGGN 580
            + +LK +W+++N+ LA+DQ + G GT PL++YFFWPR DAWEELK  LESK WIS    + LLN+AT++IN WQ+ G N
Sbjct:    3 KFILKILWLDENVALAVDQVV-GKGTSPLTKYFFWPRNDAWEELKKELESKHWISDLDRVELLNKATEVINYWQEEGRN 80          
The following BLAST results are available for this feature:
BLAST of FC920451 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
RRP31_ARATH3.246e-4256.0030S ribosomal protein 3-1, chloroplastic OS=Arabid... [more]
RRP3_SPIOL7.231e-4252.2530S ribosomal protein 3, chloroplastic OS=Spinacia... [more]
RRP32_ARATH1.667e-3847.2830S ribosomal protein 3-2, chloroplastic OS=Arabid... [more]
RRP3_HORVU3.476e-3671.4330S ribosomal protein 3, chloroplastic OS=Hordeum ... [more]
RRP3_CYAP43.731e-2252.87Probable 30S ribosomal protein PSRP-3 OS=Cyanothec... [more]
RRP3_PORYE8.312e-2254.65Probable 30S ribosomal protein 3, chloroplastic OS... [more]
RRP3_PORPU1.852e-2157.14Probable 30S ribosomal protein 3, chloroplastic OS... [more]
RRP3_THEEB2.418e-2152.27Probable 30S ribosomal protein PSRP-3 OS=Thermosyn... [more]
RRP3_ANAVT3.158e-2155.70Probable 30S ribosomal protein PSRP-3 OS=Anabaena ... [more]
RRP3_ANASP3.158e-2155.70Probable 30S ribosomal protein PSRP-3 OS=Anabaena ... [more]

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Properties
Property NameValue
Genbank descriptionC32008E12EF RVDevelop1 Citrus clementina cDNA clone C32008E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920451 ID=FC920451; Name=FC920451; organism=Citrus clementina; type=EST; length=714bp
GGAGGAGTGAACTGGTTGATAAACAAACAAATCTGTGCTTGCTCTCCTTC
TCTTTGAAGAACACAAAATGTTATCATCAATGGCACTTCAATCTACTGTT
AATGGTGCATTCACCACACGCTCCTCATTCCCTTCCCAAAAACTCACTGT
CAAACCCACCAAAACCACCATTCTTCACCAAAATAGAACCAAACCCATTT
CAAGAAACCAAAGGCTCGTTGCTTTAGCAACCCCAGAATCACTCACAGCT
GAAGAAGCAACAACAACATCCACAGAGACCATCCCAGCAACCCCAGTAGA
AACTAAGAAGGCGGGGGTGTCAGTGAAGCAATTGGAGAAGCCAAGGCTGG
TATTGAAGTTTATATGGATGGAGAAGAACATTGGTCTAGCTCTTGACCAG
ACGATACCTGGGTATGGCACCATTCCTTTGAGTCAATACTTCTTTTGGCC
GAGAAAAGATGCATGGGAAGAGCTCAAGACAACTCTTGAGAGCAAACCCT
GGATTTCCCAGAAAATGATGATTATACTTCTAAATCAGGCCACTGATATT
ATCAATTTGTGGCAGCAGAGCGGTGGCAATCTTACTACTTAGTTGGATGA
AAATTCCGGTTTCTCTGTGAGTTCTCATCGTTTTTGTATTTCAGTTATTG
GATTTGATTTGTATAATTGAAACCTTGNTCACATCTGCAGGAAAAAAAAA
AAAAAAAAAAAAAA
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