FC920451
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC920451 vs. ExPASy Swiss-Prot
Match: RRP31_ARATH (30S ribosomal protein 3-1, chloroplastic OS=Arabidopsis thaliana GN=At1g68590 PE=1 SV=1) HSP 1 Score: 171.785 bits (434), Expect = 3.246e-42 Identity = 98/175 (56.00%), Postives = 115/175 (65.71%), Query Frame = 2 Query: 68 MLSSMALQSTVNGAFTTRSSFPSQKLTVKPTKTT-ILHQNRTKPISRNQRLVXXXXXXXXXXXXXXXXXXXXXXXXPVETKKAGVSVKQLEKPRLVLKFIWMEKNIGLALDQTIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQATDIINLWQQSGGNLTT 589 M+SSMAL ST + SSF SQ + T + + H TKPIS ++++ P +T K VK EK R+VLKF+WMEKNIGL LDQ +PG+GTIPLS YFFWPRKDAWEELK+TLE+KPWISQK MIILLNQATDIINLWQQSGGNLT+ Sbjct: 1 MMSSMALSST-----SLCSSFISQHPKLSITASPPLFHTQTTKPISVKRKIITLAAPETLTAETVTGIDTSDNT--PQQTIKV---VKPDEKSRVVLKFVWMEKNIGLGLDQHVPGHGTIPLSPYFFWPRKDAWEELKSTLEAKPWISQKKMIILLNQATDIINLWQQSGGNLTS 165
BLAST of FC920451 vs. ExPASy Swiss-Prot
Match: RRP3_SPIOL (30S ribosomal protein 3, chloroplastic OS=Spinacia oleracea GN=PSRP3 PE=1 SV=1) HSP 1 Score: 170.629 bits (431), Expect = 7.231e-42 Identity = 93/178 (52.25%), Postives = 109/178 (61.24%), Query Frame = 2 Query: 77 SMALQSTVNGAFTTRSSFPSQKLTVKPTKTTILHQNRT-------KPISRNQRLVXXXXXXXXXXXXXXXXXXXXXXXXPVETKKAGVSVKQLEKPRLVLKFIWMEKNIGLALDQTIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQATDIINLWQQSGGNLTT 589 SMA+Q +N A S + S KL++KP KT + + + V +K V VK ++KPRLVLKFIWMEKNIGLALDQTIPG+GT+PLS Y+FWPRKDAWEELK LE+KPWISQK MIILLNQATDIINLWQQSGGNL + Sbjct: 3 SMAVQPNIN-AIAKPSIYQSPKLSLKPFKTPAFANPKPFFSSPSFSQLKKKNNWSLFVAPETISDVAIMGNEVDIDDDLLVNKEKLKVLVKPMDKPRLVLKFIWMEKNIGLALDQTIPGHGTVPLSPYYFWPRKDAWEELKVLLENKPWISQKQMIILLNQATDIINLWQQSGGNLAS 179
BLAST of FC920451 vs. ExPASy Swiss-Prot
Match: RRP32_ARATH (30S ribosomal protein 3-2, chloroplastic OS=Arabidopsis thaliana GN=At5g15760 PE=2 SV=1) HSP 1 Score: 159.458 bits (402), Expect = 1.667e-38 Identity = 87/184 (47.28%), Postives = 109/184 (59.24%), Query Frame = 2 Query: 80 MALQSTVNGAFTTRSSFPSQKLTVKPTKTTILHQNRTKPISR---------------NQRLVXXXXXXXXXXXXXXXXXXXXXXXXPVETKKAGVSVKQLEKPRLVLKFIWMEKNIGLALDQTIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQATDIINLWQQSGGNLT 586 MA+Q+ + +F R++ PSQKL+ KP L + KP SR + P+ KK V VK LEKP++VLKF+WM+K+IG+ALD IPG+GTIPLS Y+FWPRKDAWEELKT LESKPWIS+ + LLNQATDIINLWQ SGG+L+ Sbjct: 1 MAVQANQSASFGFRTASPSQKLSSKPIAHISL-STKLKPSSRPSLSCSTWNQGQIPARHSCINPGIFAYPPSNLTFSHELPESESPPLGKKKMRVLVKPLEKPKVVLKFVWMQKDIGVALDHMIPGFGTIPLSPYYFWPRKDAWEELKTLLESKPWISELHRVFLLNQATDIINLWQSSGGDLS 183
BLAST of FC920451 vs. ExPASy Swiss-Prot
Match: RRP3_HORVU (30S ribosomal protein 3, chloroplastic OS=Hordeum vulgare GN=PSRP3 PE=2 SV=1) HSP 1 Score: 151.754 bits (382), Expect = 3.476e-36 Identity = 70/98 (71.43%), Postives = 82/98 (83.67%), Query Frame = 2 Query: 296 VETKKAGVSVKQLEKPRLVLKFIWMEKNIGLALDQTIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQATDIINLWQQSGGNLTT 589 VE+++ V V + + P LVLKFIWMEKNIG+ALDQ +PG G+IPLS Y+FWPRKDAWEEL+ LE K WISQK MIILLNQATDIINLWQQ GG+L+T Sbjct: 84 VESEEYKVEVPEKQDPMLVLKFIWMEKNIGIALDQMVPGVGSIPLSPYYFWPRKDAWEELRAKLEEKEWISQKQMIILLNQATDIINLWQQGGGSLST 181
BLAST of FC920451 vs. ExPASy Swiss-Prot
Match: RRP3_CYAP4 (Probable 30S ribosomal protein PSRP-3 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=Cyan7425_0465 PE=3 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 3.731e-22 Identity = 46/87 (52.87%), Postives = 63/87 (72.41%), Query Frame = 2 Query: 320 SVKQLEKPRLVLKFIWMEKNIGLALDQTIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQATDIINLWQQSGGN 580 ++ ++ + +LK +W++ N+ LA+DQ + G GT PL+ YFFWPR DAWE+LKT LE K WIS+ I LLN+ATDIIN WQ+ G N Sbjct: 5 TILEVSLSQFILKVLWLDSNVALAVDQVV-GKGTSPLTSYFFWPRADAWEQLKTELEKKTWISEADRIALLNRATDIINYWQEEGRN 90
BLAST of FC920451 vs. ExPASy Swiss-Prot
Match: RRP3_PORYE (Probable 30S ribosomal protein 3, chloroplastic OS=Porphyra yezoensis GN=ycf65 PE=3 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 8.312e-22 Identity = 47/86 (54.65%), Postives = 62/86 (72.09%), Query Frame = 2 Query: 317 VSVKQLEKPRLVLKFIWMEKNIGLALDQTIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQATDIINLWQQSG 574 + +K L K LK +W+E NI +A+DQ + G GT PL+ YFFWPR DAWEELK LESKPWI+++ I LLN+ T++IN WQ+ G Sbjct: 1 MEIKNLSK--FTLKVLWLENNIAIAIDQIV-GNGTSPLTSYFFWPRNDAWEELKAELESKPWIAERDRIELLNKTTEVINYWQEEG 83
BLAST of FC920451 vs. ExPASy Swiss-Prot
Match: RRP3_PORPU (Probable 30S ribosomal protein 3, chloroplastic OS=Porphyra purpurea GN=ycf65 PE=3 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 1.852e-21 Identity = 44/77 (57.14%), Postives = 58/77 (75.32%), Query Frame = 2 Query: 344 RLVLKFIWMEKNIGLALDQTIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQATDIINLWQQSG 574 + LK +W+E NI +A+DQ + G GT PL+ YFFWPR DAWEELK LESKPWI+++ I LLN+ T++IN WQ+ G Sbjct: 3 KFTLKVLWLENNIAIAIDQIV-GNGTSPLTSYFFWPRNDAWEELKAELESKPWIAERDRIELLNKTTEVINYWQEEG 78
BLAST of FC920451 vs. ExPASy Swiss-Prot
Match: RRP3_THEEB (Probable 30S ribosomal protein PSRP-3 OS=Thermosynechococcus elongatus (strain BP-1) GN=tlr0301 PE=3 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 2.418e-21 Identity = 46/88 (52.27%), Postives = 63/88 (71.59%), Query Frame = 2 Query: 317 VSVKQLEKPRLVLKFIWMEKNIGLALDQTIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQATDIINLWQQSGGN 580 +S ++LE R L+ +W+EK++ +A+DQ + G GT PL+ YFFWPR DAWE LK LE K WI++ I LLN+AT+IIN WQ+ G N Sbjct: 3 ISFRRLELSRFTLRVLWLEKDVAIAVDQIV-GKGTSPLTSYFFWPRTDAWELLKAELEKKSWITEAERIELLNRATEIINYWQEEGKN 89
BLAST of FC920451 vs. ExPASy Swiss-Prot
Match: RRP3_ANAVT (Probable 30S ribosomal protein PSRP-3 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=Ava_3866 PE=3 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 3.158e-21 Identity = 44/79 (55.70%), Postives = 60/79 (75.95%), Query Frame = 2 Query: 344 RLVLKFIWMEKNIGLALDQTIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQATDIINLWQQSGGN 580 + +LK +W+++N+ LA+DQ + G GT PL++YFFWPR DAWEELK LESK WIS + LLN+AT++IN WQ+ G N Sbjct: 3 KFILKILWLDENVALAVDQVV-GKGTSPLTKYFFWPRNDAWEELKKELESKHWISDLDRVELLNKATEVINYWQEEGRN 80
BLAST of FC920451 vs. ExPASy Swiss-Prot
Match: RRP3_ANASP (Probable 30S ribosomal protein PSRP-3 OS=Anabaena sp. (strain PCC 7120) GN=asr3168 PE=3 SV=2) HSP 1 Score: 102.064 bits (253), Expect = 3.158e-21 Identity = 44/79 (55.70%), Postives = 60/79 (75.95%), Query Frame = 2 Query: 344 RLVLKFIWMEKNIGLALDQTIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQATDIINLWQQSGGN 580 + +LK +W+++N+ LA+DQ + G GT PL++YFFWPR DAWEELK LESK WIS + LLN+AT++IN WQ+ G N Sbjct: 3 KFILKILWLDENVALAVDQVV-GKGTSPLTKYFFWPRNDAWEELKKELESKHWISDLDRVELLNKATEVINYWQEEGRN 80 The following BLAST results are available for this feature:
BLAST of FC920451 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 31
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Sequences
The
following sequences are available for this feature:
EST sequence >FC920451 ID=FC920451; Name=FC920451; organism=Citrus clementina; type=EST; length=714bpback to top |