FC920469

Overview
NameFC920469
Unique NameFC920469
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length751
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10831 contig Ccv1_Contig10831:144..894. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920469 vs. ExPASy Swiss-Prot
Match: STHY_ARATH (Probable salt tolerance-like protein At1g78600 OS=Arabidopsis thaliana GN=At1g78600 PE=1 SV=2)

HSP 1 Score: 215.312 bits (547), Expect = 2.810e-55
Identity = 110/210 (52.38%), Postives = 137/210 (65.24%), Query Frame = 3
Query:   87 MRIQCNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCDICQETSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQRFLLTGVKVGLEPADPGAXXXXXXXXXGENILDMKSHSLSRRDAL---------MPVAAECKEVLPASSGGVGDFAMNKVSF-AGGSAAGSTPSWHMDDFLALPELNXNYSFMDN 686
            M+IQCNVCEAAEA VLCCADEAALCW CD+K+HAANKLA KHQRVPLS+S++ +PKCDICQE SGFFFCLQDRALLCRKCDVAIHT N +VSAHQRFLLTG+KVGLE  D G           +  ++ K    S  +                + + V+P +   V D    K+   + GS  GS P W +++   L + + +Y +M+N
Sbjct:    1 MKIQCNVCEAAEATVLCCADEAALCWACDEKIHAANKLAGKHQRVPLSASASSIPKCDICQEASGFFFCLQDRALLCRKCDVAIHTVNPHVSAHQRFLLTGIKVGLESIDTG-PSTKSSPTNDDKTMETKPFVQSIPEPQKMAFDHHHHQQQQEQQEGVIPGTK--VNDQTSTKLPLVSSGSTTGSIPQWQIEEIFGLTDFDQSYEYMEN 207          
BLAST of FC920469 vs. ExPASy Swiss-Prot
Match: STO_ARATH (Salt tolerance protein OS=Arabidopsis thaliana GN=STO PE=1 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 6.953e-38
Identity = 71/106 (66.98%), Postives = 87/106 (82.08%), Query Frame = 3
Query:   87 MRIQCNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCDICQETSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQRFLLTGVKVGL 404
            M+IQC+VCE A A V+CCADEAALC +CD ++HAANKLASKHQR+ L+S ST+ P+CDICQE + F FC++DRALLCR CD +IH ANS  + HQRFL TG+KV L
Sbjct:    1 MKIQCDVCEKAPATVICCADEAALCPQCDIEIHAANKLASKHQRLHLNSLSTKFPRCDICQEKAAFIFCVEDRALLCRDCDESIHVANSRSANHQRFLATGIKVAL 106          
BLAST of FC920469 vs. ExPASy Swiss-Prot
Match: STH_ARATH (Salt tolerance-like protein OS=Arabidopsis thaliana GN=STH PE=1 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 1.227e-34
Identity = 67/106 (63.21%), Postives = 82/106 (77.36%), Query Frame = 3
Query:   87 MRIQCNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCDICQETSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQRFLLTGVKVGL 404
            M+IQC+VCE A A ++CCADEAALC +CD +VHAANKLASKHQR+ L S ST+ P CDIC E + F FC++DRALLCR CD A H  N+  + HQRFL TG++V L
Sbjct:    1 MKIQCDVCEKAPATLICCADEAALCAKCDVEVHAANKLASKHQRLFLDSLSTKFPPCDICLEKAAFIFCVEDRALLCRDCDEATHAPNTRSANHQRFLATGIRVAL 106          
BLAST of FC920469 vs. ExPASy Swiss-Prot
Match: STHX_ARATH (Probable salt tolerance-like protein At1g75540 OS=Arabidopsis thaliana GN=At1g75540 PE=1 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 8.795e-33
Identity = 79/195 (40.51%), Postives = 106/195 (54.36%), Query Frame = 3
Query:   87 MRIQCNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPL---SSSSTQMPKCDICQETSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQRFLLTGVKVGLEPADPGAXXXXXXXXXGENILDMKSHSLSRRDAL-MPVAA--ECKEVLPASSGGVGDFAMNK---VSFAGGSAAGSTPSWHMDDFL 644
            M+I+C+VC+  EA V C ADEA+LC  CD +VH ANKLASKH R  L   SSS+T  P CDICQ+     FC QDRA+LC+ CD +IH AN +   H RFLLTGVK+    +                   +   S+S    L  P++A  +  ++ P S    GD ++N+    S        + P WH++DFL
Sbjct:    1 MKIRCDVCDKEEASVFCTADEASLCGGCDHQVHHANKLASKHLRFSLLYPSSSNTSSPLCDICQDKKALLFCQQDRAILCKDCDSSIHAANEHTKKHDRFLLTGVKLSATSSVYKPTSKSSSSSSSNQDFSVPGSSISNPPPLKKPLSAPPQSNKIQPFSKINGGDASVNQWGSTSTISEYLMDTLPGWHVEDFL 195          
BLAST of FC920469 vs. ExPASy Swiss-Prot
Match: COL1_ARATH (Zinc finger protein CONSTANS-LIKE 1 OS=Arabidopsis thaliana GN=COL1 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.480e-16
Identity = 41/92 (44.57%), Postives = 50/92 (54.35%), Query Frame = 3
Query:   99 CNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCDICQETSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQR 374
            C+ C +A   V C AD A LC  CD +VHAAN+LAS+H+RV +         C  C+     FFC  D A LC  CD  IH+AN     HQR
Sbjct:   12 CDTCRSAACTVYCRADSAYLCSSCDAQVHAANRLASRHERVRV---------CQSCERAPAAFFCKADAASLCTTCDSEIHSANPLARRHQR 94          
BLAST of FC920469 vs. ExPASy Swiss-Prot
Match: COL3_ARATH (Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis thaliana GN=COL3 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.842e-15
Identity = 41/105 (39.05%), Postives = 57/105 (54.29%), Query Frame = 3
Query:   99 CNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCDICQETSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQRFLLTGVKVGLEPA 413
            C+ C++  A + C AD A LC +CD K+H ANKLAS+H+RV L         C++C++      C  D A LC  CD  IH+AN     H+R  +T     + PA
Sbjct:    8 CDSCKSTAATLFCRADAAFLCGDCDGKIHTANKLASRHERVWL---------CEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLSRRHERVPITPFYDAVGPA 103          
BLAST of FC920469 vs. ExPASy Swiss-Prot
Match: COL2_ARATH (Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis thaliana GN=COL2 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.848e-15
Identity = 39/92 (42.39%), Postives = 49/92 (53.26%), Query Frame = 3
Query:   99 CNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCDICQETSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQR 374
            C+ C +A   V C AD A LC  CD +VHAAN++AS+H+RV +         C  C+     F C  D A LC  CD  IH+AN     HQR
Sbjct:   16 CDTCRSAACTVYCEADSAYLCTTCDARVHAANRVASRHERVRV---------CQSCESAPAAFLCKADAASLCTACDAEIHSANPLARRHQR 98          
BLAST of FC920469 vs. ExPASy Swiss-Prot
Match: COL4_ARATH (Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana GN=COL4 PE=2 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 8.270e-15
Identity = 40/96 (41.67%), Postives = 53/96 (55.21%), Query Frame = 3
Query:   99 CNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCDICQETSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQRFLLT 386
            C+ C++A A + C  D A LC  CD KVHAANKLAS+H RV +         C++C++      C  D A LC  CD  IH+AN     H+R  +T
Sbjct:    6 CDSCKSATAALYCRPDAAFLCLSCDSKVHAANKLASRHARVWM---------CEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLARRHERVPVT 92          
BLAST of FC920469 vs. ExPASy Swiss-Prot
Match: CONS_ARATH (Zinc finger protein CONSTANS OS=Arabidopsis thaliana GN=CO PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.144e-14
Identity = 36/92 (39.13%), Postives = 49/92 (53.26%), Query Frame = 3
Query:   99 CNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCDICQETSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQR 374
            C+ C +    V C AD A LC  CD +VH+AN++AS+H+RV +         C+ C+     F C  D A LC  CD  +H+AN     HQR
Sbjct:   20 CDTCRSNACTVYCHADSAYLCMSCDAQVHSANRVASRHKRVRV---------CESCERAPAAFLCEADDASLCTACDSEVHSANPLARRHQR 102          
BLAST of FC920469 vs. ExPASy Swiss-Prot
Match: COL13_ARATH (Zinc finger protein CONSTANS-LIKE 13 OS=Arabidopsis thaliana GN=COL13 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.927e-13
Identity = 37/93 (39.78%), Postives = 53/93 (56.99%), Query Frame = 3
Query:   99 CNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCDICQETSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQRF 377
            C+ C+++ A V C AD A LC  CD +VH AN+L +KH R  L         CD C E+    FC  +R++LC+ CD   HTA+S + + + F
Sbjct:   13 CDYCDSSVALVYCKADSAKLCLACDKQVHVANQLFAKHFRSLL---------CDSCNESPSSLFCETERSVLCQNCDWQHHTASSSLHSRRPF 96          
The following BLAST results are available for this feature:
BLAST of FC920469 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
STHY_ARATH2.810e-5552.38Probable salt tolerance-like protein At1g78600 OS=... [more]
STO_ARATH6.953e-3866.98Salt tolerance protein OS=Arabidopsis thaliana GN=... [more]
STH_ARATH1.227e-3463.21Salt tolerance-like protein OS=Arabidopsis thalian... [more]
STHX_ARATH8.795e-3340.51Probable salt tolerance-like protein At1g75540 OS=... [more]
COL1_ARATH7.480e-1644.57Zinc finger protein CONSTANS-LIKE 1 OS=Arabidopsis... [more]
COL3_ARATH2.842e-1539.05Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis... [more]
COL2_ARATH4.848e-1542.39Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis... [more]
COL4_ARATH8.270e-1541.67Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis... [more]
CONS_ARATH9.144e-1439.13Zinc finger protein CONSTANS OS=Arabidopsis thalia... [more]
COL13_ARATH5.927e-1339.78Zinc finger protein CONSTANS-LIKE 13 OS=Arabidopsi... [more]
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Properties
Property NameValue
Genbank descriptionC32008G09EF RVDevelop1 Citrus clementina cDNA clone C32008G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920469 ID=FC920469; Name=FC920469; organism=Citrus clementina; type=EST; length=751bp
CAAGTGGTTCGGCAAACTCCTTTTACAAAATTAAAAAACGACGTCGTTTC
GATTCTTTTGTGGTCTCGCGGTTTACACAGAGAGAGATGAGGATACAGTG
CAACGTATGCGAGGCGGCGGAGGCGAAGGTGCTGTGCTGCGCCGACGAGG
CGGCGCTGTGCTGGGAGTGCGACGACAAAGTTCACGCCGCCAATAAGCTA
GCGAGCAAGCACCAGAGAGTCCCTCTCTCCTCTTCTTCGACACAAATGCC
CAAGTGTGATATCTGTCAGGAAACATCTGGCTTTTTCTTTTGTCTACAAG
ATCGAGCCTTACTCTGCAGGAAATGTGATGTTGCCATACACACAGCGAAT
AGCTATGTGTCTGCTCATCAGAGATTTTTGCTTACTGGAGTAAAAGTAGG
TCTTGAACCAGCTGATCCTGGTGCTTCATCTTCCTCTATTAAGTCACTAT
CTGGGGAAAACATTTTGGACATGAAATCCCATTCCCTGTCTAGAAGGGAC
GCCCTGATGCCAGTGGCTGCTGAATGCAAAGAAGTTTTACCTGCTAGTTC
TGGTGGAGTTGGCGACTTTGCAATGAACAAAGTCTCATTTGCTGGGGGGT
CTGCAGCTGGAAGCACTCCGTCGTGGCACATGGATGATTTTCTAGCACTT
CCTGAGCTCAATCNAAATTATAGCTTCATGGATAATGGGTCATCTAAGGC
TGATAGTGGCAAGCGTGGAGACTCTGACAGCTCATCTATCTTAAGATCTG
C
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