FC920486
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC920486 vs. ExPASy Swiss-Prot
Match: DR100_ARATH (DNA-damage-repair/toleration protein DRT100 OS=Arabidopsis thaliana GN=DRT100 PE=2 SV=2) HSP 1 Score: 193.741 bits (491), Expect = 5.209e-49 Identity = 92/156 (58.97%), Postives = 116/156 (74.36%), Query Frame = 1 Query: 103 AQLLLIFLAXXXXXXNCCPPSERAALLAFKAALHEPYLGIFNSWTGN-DCCHNWYGVSCDQETHRVADINLRGESEDPIFQRAHRTGYMTGYISPAVCKLTRLSSFTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPPDIGRPHRLAVLN 567 + LL + CC P ++ AL AFK++L EP LGIFN+W+ N DCC WYG+SCD ++ RV DI+LRGESED IFQ+A R+GYM+G I PAVC LT L+S LADWKGITGEIP CI+S+ LRILDL GNK++G+IP +IG+ +LAVLN Sbjct: 10 SSLLAVVFISVISVVRCCSPKDQTALNAFKSSLSEPNLGIFNTWSENTDCCKEWYGISCDPDSGRVTDISLRGESEDAIFQKAGRSGYMSGSIDPAVCDLTALTSLVLADWKGITGEIPPCITSLASLRILDLAGNKITGEIPAEIGKLSKLAVLN 165
BLAST of FC920486 vs. ExPASy Swiss-Prot
Match: PGIP_VITVI (Polygalacturonase inhibitor OS=Vitis vinifera GN=pgip PE=1 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 3.190e-14 Identity = 56/170 (32.94%), Postives = 75/170 (44.12%), Query Frame = 1 Query: 100 TAQLLLIFLAXXXXXX--NCCPPSERAALLAFKAALHEPYLGIFNSWTGNDCCHNWYGVSCDQETHRVADIN-----LRGESEDPIFQRA-------HRTGYMTGYISPAVCKLTRLSSFTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIP------PDIGRPH 549 ++ LLL+ LA C P ++ LL K AL PY I SW N C WY V CD THR+ + L G+ D + + +TG I PA+ KL L L+ W ++G +P S + L LDL N LSG IP P++G H Sbjct: 10 SSSLLLVLLATRPCPSLSERCNPKDKKVLLQIKKALDNPY--ILASWNPNTDCCGWYCVECDLTTHRINSLTIFSGQLSGQIPDAVGDLPFLETLIFRKLSNLTGQIPPAIAKLKHLKMVRLS-WTNLSGPVPAFFSELKNLTYLDLSFNNLSGPIPGSLSLLPNLGALH 176
BLAST of FC920486 vs. ExPASy Swiss-Prot
Match: PGIP1_ORYSJ (Polygalacturonase inhibitor 1 OS=Oryza sativa subsp. japonica GN=FOR1 PE=2 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 4.311e-11 Identity = 49/156 (31.41%), Postives = 72/156 (46.15%), Query Frame = 1 Query: 76 MGGCVSFYTAQLLLIFLAXXXXXXNCCPPSERAALLAFKAALHEPYLGIFNSWTGNDCCHNWYGVSCDQETHRVADINLRGESEDPIFQRAHRTGYMTGYISPAVCKLTRLSSFTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPPDIGR 543 M SF A LL + +A CPPS++ AL+ K +L P S DCC W V CD E RV ++ + G ++ + G I AV LT L S +L G++G IP C++++ L+ L + +SG IP + R Sbjct: 1 MASTASFMLAVLLAVAVAAAPARAVRCPPSDKQALMRVKQSLGNPATLSTWSLASADCC-EWDHVRCD-EAGRVNNVFIDGAND------------VRGQIPSAVAGLTALMSLSLFRLPGLSGPIPACLTALSNLQFLTISHTNVSGVIPDSLAR 142 The following BLAST results are available for this feature:
BLAST of FC920486 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 3
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC920486 ID=FC920486; Name=FC920486; organism=Citrus clementina; type=EST; length=567bpback to top |