FC920498

Overview
NameFC920498
Unique NameFC920498
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length639
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12749 contig Ccv1_Contig12749:145..783. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920498 vs. ExPASy Swiss-Prot
Match: MTL10_HUMAN (Methyltransferase-like protein 10 OS=Homo sapiens GN=METTL10 PE=1 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 9.302e-19
Identity = 52/137 (37.96%), Postives = 71/137 (51.82%), Query Frame = 1
Query:  220 SDKEEPDPEGMA-SMLGLQSYWDSAYADELANFREHGHAGEVWFGADVMDVVASWTKSLCISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINPCSSLANRDGFS 627
            SDK  P  +G   S LG + +WD+ Y  EL  FRE+G  GE+WFG + M+ +  W +   I +                           SVLDIGTGNG+ L EL+K GFS++TG+DYS  AI    S+  ++G S
Sbjct:   17 SDKGSPGEDGFVPSALGTREHWDAVYERELQTFREYGDTGEIWFGEESMNRLIRWMQKHKIPLDA-------------------------SVLDIGTGNGVFLVELAKFGFSNITGIDYSPSAIQLSGSIIEKEGLS 128          
BLAST of FC920498 vs. ExPASy Swiss-Prot
Match: MTL10_MOUSE (Methyltransferase-like protein 10 OS=Mus musculus GN=Mettl10 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.706e-17
Identity = 46/124 (37.10%), Postives = 65/124 (52.42%), Query Frame = 1
Query:  256 SMLGLQSYWDSAYADELANFREHGHAGEVWFGADVMDVVASWTKSLCISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINPCSSLANRDGFS 627
            S LG + +WD+ Y  EL  F+E+G  GE+WFG + M+ +  W +   I +                           SVLDIGTGNG+ L EL K GFS++TG+DYS  AI   +S+  ++G S
Sbjct:   30 SALGTREHWDAVYERELRTFQEYGDTGEIWFGEESMNRLIRWMQKHKIPLDA-------------------------SVLDIGTGNGVFLVELVKHGFSNITGIDYSPSAIKLSASILEKEGLS 128          
BLAST of FC920498 vs. ExPASy Swiss-Prot
Match: MTL10_DANRE (Methyltransferase-like protein 10 OS=Danio rerio GN=mettl10 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 9.626e-16
Identity = 43/122 (35.25%), Postives = 67/122 (54.92%), Query Frame = 1
Query:  256 SMLGLQSYWDSAYADELANFREHGHAGEVWFGADVMDVVASWTKSLCISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINPCSSLANRDG 621
            S LG + YWD AY  EL  +++ G  GE+WFG + M  V  W                   ++++ + EN       ++LDIGTGNG+ L EL++ GFS+LTG+DYS+ A+   +++   +G
Sbjct:   26 SKLGTKEYWDGAYKRELQTYKDIGDVGEIWFGEESMHRVIRW-------------------MEAQNISENA------AILDIGTGNGMFLVELARHGFSNLTGIDYSKAALELTTNILVEEG 122          
BLAST of FC920498 vs. ExPASy Swiss-Prot
Match: YHRE_SCHPO (Uncharacterized protein C839.14c OS=Schizosaccharomyces pombe GN=SPBC839.14c PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.139e-11
Identity = 44/130 (33.85%), Postives = 62/130 (47.69%), Query Frame = 1
Query:  256 SMLGLQSYWDSAYADELANFREHGHAGEVWFGADVMDVVASWTKSLCISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFS------DLTGVDYSEDAINPCSSLANRDGFS 627
            S LG + YWD+ Y  E++NF E    GEVWFG +  + +  W +            +H+     E  E      + + VLD+GTGNG LL  L ++  +       L GVDYSE AI    ++A    FS
Sbjct:    7 SKLGTKQYWDNVYEREVSNFTEFNDEGEVWFGEEAEERIVQWLE------------DHISTSFREVSE-----AAPFRVLDLGTGNGHLLFRLLEEEDTLLPSPCQLVGVDYSEAAIVLAKNIARHRQFS 119          
The following BLAST results are available for this feature:
BLAST of FC920498 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
MTL10_HUMAN9.302e-1937.96Methyltransferase-like protein 10 OS=Homo sapiens ... [more]
MTL10_MOUSE8.706e-1737.10Methyltransferase-like protein 10 OS=Mus musculus ... [more]
MTL10_DANRE9.626e-1635.25Methyltransferase-like protein 10 OS=Danio rerio G... [more]
YHRE_SCHPO7.139e-1133.85Uncharacterized protein C839.14c OS=Schizosaccharo... [more]
back to top
Properties
Property NameValue
Genbank descriptionC32009B12EF RVDevelop1 Citrus clementina cDNA clone C32009B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920498 ID=FC920498; Name=FC920498; organism=Citrus clementina; type=EST; length=639bp
CGATTGCCGCCGGAAGAACCCGAGGTTTCGCCGCAACAGCCGCCGCAGCA
GGTCCGCATCGCGGGCGATCTAGTGTCTGACGACGAGCGGTCAGTCGCTG
CGGACTCGTGGTCAATAAAGAGCGAGTATGGAAGCACTCTCGACGATGAT
CAGCGCCACGCCGATGCCGCTGAGGCCCTCTCCTCCGCCGCAAACTTCCG
CGCTAATTCTGATTACAATTCTGACAAGGAGGAGCCAGATCCAGAAGGGA
TGGCATCAATGTTAGGTCTTCAGAGTTACTGGGATTCTGCTTACGCAGAT
GAGTTGGCTAATTTTCGTGAACATGGCCATGCTGGTGAAGTTTGGTTTGG
AGCTGATGTCATGGATGTTGTTGCTTCTTGGACAAAAAGCTTGTGCATTA
GCATATCACAAGGTCACATGCTGAATCATGTTGAAGATCTTAAGTCTGAG
CCTGTGGAAGAGAATGATAAGTATTTGTCTTCTTGGAGTGTACTTGATAT
TGGTACTGGCAATGGTCTGCTTCTTCAAGAACTTTCCAAGCAGGGGTTCT
CTGATTTAACTGGAGTTGATTATAGTGAAGATGCAATAAACCCTTGCTCA
AGCCTTGCTAATCGTGATGGATTTTCTGTATTAANTTTT
back to top