FC920502

Overview
NameFC920502
Unique NameFC920502
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length568
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920502_ssr1 microsatellite FC920502_ssr1:1..24. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig13611 contig Ccv1_Contig13611:73..640. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC920502 vs. ExPASy Swiss-Prot
Match: Y1686_ARATH (Uncharacterized membrane protein At1g16860 OS=Arabidopsis thaliana GN=At1g16860 PE=1 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 3.694e-39
Identity = 85/132 (64.39%), Postives = 95/132 (71.97%), Query Frame = 3 
Query:  171 MGSRFPSHQLSNGLYVSGRPEQPKERTPTMSSVAMPYTGGDIKKSGELEKMFDIPVDSSKSTKSGPINNAPSRTGSFGGAASHSGPIMPNAASRXXXXXXXXXXXXXXXXXXXLKKSHSGPLNKHGETSKKS 566
            MGSR+PSHQLSNGL+VSGRPEQPKER PTMS+VAMPYTGGDIK+SGEL KMFDIP D +KS KSGPI  APSR+GSF G A  SGP  P A  R                   +KK++SGPL+KHGE  KKS
Sbjct:    1 MGSRYPSHQLSNGLFVSGRPEQPKERAPTMSAVAMPYTGGDIKRSGELGKMFDIPADGTKSRKSGPIPGAPSRSGSFAGTA-QSGPGAPMATGR-------MSGSLASAGSVSMKKTNSGPLSKHGEPLKKS 124
The following BLAST results are available for this feature:
BLAST of FC920502 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y1686_ARATH3.694e-3964.39Uncharacterized membrane protein At1g16860 OS=Arab... [more]
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Properties
Property NameValue
Genbank descriptionC32009C05EF RVDevelop1 Citrus clementina cDNA clone C32009C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920502 ID=FC920502; Name=FC920502; organism=Citrus clementina; type=EST; length=568bp
CTTCTTCTTCTTCTTCTTCTTCTTCTGCTGCTACTACTGGTACTGCTATA
GTCCTGCTACTACTACTTTAACTGTTATTTCTACTCTTAGGTGAGCTGTG
AAAATCGCATCAGCATTCTGTGAGTGGTCTTTGGTTTGTGGTACTGTGTG
GAGTCTTATAGAGTAGCAAGATGGGTTCCAGGTTCCCATCTCATCAGCTC
AGCAATGGCCTTTACGTATCAGGCCGGCCAGAGCAACCCAAAGAAAGGAC
ACCAACAATGAGCTCAGTAGCCATGCCTTATACTGGAGGCGATATAAAAA
AATCCGGAGAGCTAGAGAAAATGTTTGATATTCCTGTTGACAGTTCCAAG
TCTACGAAGTCTGGACCTATAAATAATGCTCCTTCAAGGACTGGATCTTT
TGGTGGTGCTGCTTCACATTCAGGACCTATCATGCCTAATGCTGCCTCTA
GGGCTAGCTACTCAACGTCAGGTCCTGTCTCTTCTGGAGTCACGTCTGGT
TCAGCTTCATTAAAGAAGTCACATTCTGGACCACTTAATAAACATGGGGA
AACATCTAAGAAGTCTTC
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