FC920508

Overview
NameFC920508
Unique NameFC920508
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig2368 contig Ccv1_Contig2368:27..738. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920508 vs. ExPASy Swiss-Prot
Match: CHMP1_DICDI (Charged multivesicular body protein 1 OS=Dictyostelium discoideum GN=chmp1 PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.491e-36
Identity = 74/161 (45.96%), Postives = 113/161 (70.19%), Query Frame = 3
Query:  123 NQIMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSV 605
            NQ+  LKFTSK L++Q                     GNMDGARIYA+N+IR++ + +NYLRLASR+DAV +R++T  +M ++  SMANIVKS+E S+   +L+K+++ MD FE+QF +++VQ+ ++E+AM  +T+LSTP  +V+ L+ QVAD++GL V +
Sbjct:    3 NQLFQLKFTSKQLEKQSKKSEQSEKAQKIKLKKAIEQGNMDGARIYAQNAIREKNQSLNYLRLASRIDAVASRVETAIRMKSVTGSMANIVKSMEKSMRNMDLEKITQVMDQFERQFEDLDVQSVYVENAMNQTTTLSTPADQVDLLISQVADEHGLNVGM 163          
BLAST of FC920508 vs. ExPASy Swiss-Prot
Match: CHM1B_BOVIN (Charged multivesicular body protein 1b OS=Bos taurus GN=CHMP1B PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.161e-33
Identity = 73/181 (40.33%), Postives = 116/181 (64.09%), Query Frame = 3
Query:   99 MGNTEKLLNQIMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVPT 641
            M N EK    + +LKF +K L R                      GNM+ ARI+AEN+IR++ + +N+LR+++R+DAV AR+ T   M  + KSMA +VKS++++L T NL+K+S  MD FE QF  ++VQ + ME  M+ +T+L+TP+G+V+ L+Q++AD+ GL++++ LPQ    +V T
Sbjct:    1 MSNMEK---HLFNLKFAAKELGRSAKKCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIRQKNQAVNFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKTMNLEKISALMDKFEHQFETLDVQTQQMEDTMSSTTTLTTPQGQVDMLLQEMADEAGLDLNMELPQGQTGSVGT 178          
BLAST of FC920508 vs. ExPASy Swiss-Prot
Match: CHM1B_HUMAN (Charged multivesicular body protein 1b OS=Homo sapiens GN=CHMP1B PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.793e-32
Identity = 72/181 (39.78%), Postives = 115/181 (63.54%), Query Frame = 3
Query:   99 MGNTEKLLNQIMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVPT 641
            M N EK    + +LKF +K L R                      GNM+ ARI+AEN+IR++ + +N+LR+++R+DAV AR+ T   M  + KSMA +VKS++++L T NL+K+S  MD FE QF  ++VQ + ME  M+ +T+L+TP+ +V+ L+Q++AD+ GL++++ LPQ    +V T
Sbjct:    1 MSNMEK---HLFNLKFAAKELSRSAKKCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIRQKNQAVNFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKTMNLEKISALMDKFEHQFETLDVQTQQMEDTMSSTTTLTTPQNQVDMLLQEMADEAGLDLNMELPQGQTGSVGT 178          
BLAST of FC920508 vs. ExPASy Swiss-Prot
Match: CHM1B_DANRE (Charged multivesicular body protein 1b OS=Danio rerio GN=chmp1b PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.994e-32
Identity = 70/181 (38.67%), Postives = 117/181 (64.64%), Query Frame = 3
Query:   99 MGNTEKLLNQIMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVPT 641
            M + EK    + +LKF +K LQR                      GNM+ ARI+AEN+IR++ + +N+LR+++R+DAV AR+ T   M  + KSMA +VK ++++L + NL+K+S  M+ FE+QF  ++VQ   ME +M+ +T+L+TP+G+V++LM ++AD+ GL++++ LPQ    +V T
Sbjct:    1 MSSMEK---HLFNLKFAAKELQRNSKKCDKEEKAEKVKVKKAIQKGNMEVARIHAENAIRQKNQSVNFLRMSARVDAVAARVQTAVTMNQVTKSMAGVVKGMDATLKSMNLEKISGLMEKFERQFETLDVQTAQMEDSMSSTTTLTTPQGQVDTLMMEMADEAGLDLNMELPQGQTGSVGT 178          
BLAST of FC920508 vs. ExPASy Swiss-Prot
Match: CHM1B_CHICK (Charged multivesicular body protein 1b OS=Gallus gallus GN=CHMP1B PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.994e-32
Identity = 71/181 (39.23%), Postives = 116/181 (64.09%), Query Frame = 3
Query:   99 MGNTEKLLNQIMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVPT 641
            M N EK    + +LKF +K L R                      GNM+ ARI+AEN+IR++ + +N+LR+++R+DAV AR+ T   M  + KSMA +VKS++++L + NL+K+S  MD FE QF  ++VQ + ME+ M+ +T+L+TP+ +V+ L+Q++AD+ GL++++ LPQ    +V T
Sbjct:    1 MSNMEK---HLFNLKFAAKELNRNSKRCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIRQKNQAINFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKSMNLEKISALMDKFEHQFETLDVQTQQMENTMSNTTTLTTPQNQVDMLLQEMADEAGLDLNMELPQGQTGSVGT 178          
BLAST of FC920508 vs. ExPASy Swiss-Prot
Match: CH1B1_MOUSE (Charged multivesicular body protein 1b-1 OS=Mus musculus GN=Chmp1b1 PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.812e-32
Identity = 71/181 (39.23%), Postives = 115/181 (63.54%), Query Frame = 3
Query:   99 MGNTEKLLNQIMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVPT 641
            M N EK    + +LKF +K L R                      GNM+ ARI+AEN+IR++ + +N+LR+++R+DAV AR+ T   M  + KSMA +VKS++++L + NL+K+S  MD FE QF  ++VQ + ME  M+ +T+L+TP+ +V+ L+Q++AD+ GL++++ LPQ    +V T
Sbjct:    1 MSNMEK---HLFNLKFAAKELNRSSKKCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIRQKNQGVNFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKSMNLEKISALMDKFEHQFETLDVQTQQMEDTMSSTTTLTTPQNQVDMLLQEMADEAGLDLNMELPQGQTGSVGT 178          
BLAST of FC920508 vs. ExPASy Swiss-Prot
Match: CH1B2_MOUSE (Charged multivesicular body protein 1b-2 OS=Mus musculus GN=Chmp1b2 PE=2 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 5.767e-31
Identity = 68/173 (39.31%), Postives = 111/173 (64.16%), Query Frame = 3
Query:   99 MGNTEKLLNQIMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQ 617
            M N EK    + +LKF +K L R                      GN + ARI+AEN+IR++ + +N+LR+++R+DAV AR+ T   M  + KSMA +VKS++++L + NL+K+S  MD FE QF  ++VQ + ME  M+ +T+L+TP+ +V+ L+Q++AD+ GL++++ LPQ
Sbjct:    1 MSNMEK---HLFNLKFAAKELNRNAKKCDKEEKAEKAKIKKAIQKGNTEVARIHAENAIRQKNQAINFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLRSMNLEKISALMDKFEHQFETLDVQTQQMEDTMSSTTTLTTPQNQVDMLLQEMADEAGLDLNMELPQ 170          
BLAST of FC920508 vs. ExPASy Swiss-Prot
Match: CHM1B_XENLA (Charged multivesicular body protein 1b OS=Xenopus laevis GN=chmp1b PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.678e-30
Identity = 69/181 (38.12%), Postives = 114/181 (62.98%), Query Frame = 3
Query:   99 MGNTEKLLNQIMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVPT 641
            M + EK    + +LKF +K L R                      GN + ARI+AEN+IR++ + +N+LR+++R+DAV AR+ T   M  + KSMA +VKS++++L + NL+K+S  MD FE QF  ++VQ + ME  M+ +T+L+TP+ +V++L+ ++AD+ GL++S+ LPQ    +V T
Sbjct:    1 MSSMEK---HLFNLKFAAKELNRNAKKCEKEEKTEKAKIKKAIQKGNTEIARIHAENAIRQKNQGINFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKSMNLEKISALMDKFEHQFETLDVQTQQMEDTMSNTTTLTTPQNQVDNLLHEMADEAGLDLSMELPQGQTGSVGT 178          
BLAST of FC920508 vs. ExPASy Swiss-Prot
Match: CHM1B_XENTR (Charged multivesicular body protein 1b OS=Xenopus tropicalis GN=chmp1b PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.738e-30
Identity = 68/181 (37.57%), Postives = 114/181 (62.98%), Query Frame = 3
Query:   99 MGNTEKLLNQIMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVPT 641
            M + EK    + +LKF +K L R                      GN + ARI+AEN+IR++ + +N+LR+++R+DAV AR+ T   M  + KSMA +VKS++++L + NL+K+S  MD FE QF  ++VQ + ME  M+ +T+L+TP+ +V++L+ ++AD+ GL++++ LPQ    +V T
Sbjct:    1 MSSMEK---NLFNLKFAAKELHRNAKKCEKEEKTEKAKIKKAIQKGNTEIARIHAENAIRQKNQGINFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDTTLKSMNLEKISALMDKFEHQFETLDVQTQQMEDTMSNTTTLTTPQNQVDNLLHEMADEAGLDLNMELPQGQTGSVGT 178          
BLAST of FC920508 vs. ExPASy Swiss-Prot
Match: CHM1A_PONAB (Charged multivesicular body protein 1a OS=Pongo abelii GN=CHMP1A PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.202e-28
Identity = 64/163 (39.26%), Postives = 104/163 (63.80%), Query Frame = 3
Query:  129 IMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQ 617
            +  LKFT+K L++                       N++ AR+YAEN+IRK+ E +N+LR+ASR+DAV +++ T   M  + K+MA + K+L+ +L+T +LQK+S  MD FE+Q  N++V    ME +M+ +T+L+TP+ +V+SL+ Q+A++ GLEV   L Q
Sbjct:    5 LFQLKFTAKQLEKLAKKAEKDSKAEQAKVKKALLQKNVECARVYAENAIRKKNEGVNWLRMASRVDAVASKVQTAVTMKGVTKNMAQVTKALDKALSTMDLQKVSSVMDRFEQQVQNLDVHTSVMEDSMSSATTLTTPQEQVDSLIMQIAEENGLEVLDQLSQ 167          
The following BLAST results are available for this feature:
BLAST of FC920508 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
CHMP1_DICDI3.491e-3645.96Charged multivesicular body protein 1 OS=Dictyoste... [more]
CHM1B_BOVIN6.161e-3340.33Charged multivesicular body protein 1b OS=Bos taur... [more]
CHM1B_HUMAN1.793e-3239.78Charged multivesicular body protein 1b OS=Homo sap... [more]
CHM1B_DANRE3.994e-3238.67Charged multivesicular body protein 1b OS=Danio re... [more]
CHM1B_CHICK3.994e-3239.23Charged multivesicular body protein 1b OS=Gallus g... [more]
CH1B1_MOUSE6.812e-3239.23Charged multivesicular body protein 1b-1 OS=Mus mu... [more]
CH1B2_MOUSE5.767e-3139.31Charged multivesicular body protein 1b-2 OS=Mus mu... [more]
CHM1B_XENLA1.678e-3038.12Charged multivesicular body protein 1b OS=Xenopus ... [more]
CHM1B_XENTR3.738e-3037.57Charged multivesicular body protein 1b OS=Xenopus ... [more]
CHM1A_PONAB1.202e-2839.26Charged multivesicular body protein 1a OS=Pongo ab... [more]

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Properties
Property NameValue
Genbank descriptionC32009D01EF RVDevelop1 Citrus clementina cDNA clone C32009D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920508 ID=FC920508; Name=FC920508; organism=Citrus clementina; type=EST; length=711bp
AAGAAGTATCTCAATAACCACAAAGTCGTCTTCGATCAAAATCCCCAATT
CTTTGAAACCCTTGCTTGATTCAATTCTCAGATCCGAAACATTTCGCGAT
GGGAAACACGGAGAAGCTGTTGAATCAGATCATGGACTTGAAATTCACCT
CAAAATCTCTTCAACGCCAGGCGAGAAAATGCGAGAAGGAAGAGAAAGCC
GAGAAATTGAAGGTGAAAAAGGCCATCGAGAAAGGCAACATGGACGGCGC
CAGAATCTACGCCGAGAACTCCATCCGCAAGCGCACCGAACAGATGAATT
ATCTCCGCCTCGCTTCTCGTCTCGACGCCGTCGTGGCTCGTCTCGACACC
CAGGCCAAAATGACCACCATTAATAAGTCCATGGCTAACATCGTCAAGTC
CCTTGAATCCTCTCTCGCTACCGGTAATTTGCAGAAGATGTCAGAGACTA
TGGACTCATTTGAGAAGCAGTTTGTGAACATGGAGGTTCAAGCAGAGTTC
ATGGAGAGTGCTATGGCAGGGTCAACCTCATTATCCACGCCAGAAGGGGA
GGTCAACAGTTTGATGCAACAGGTTGCTGATGATTATGGACTGGAGGTTT
CAGTTGGGCTCCCACAACCGGCTGCACATGCTGTGCCAACCAAGCACAAG
AGAAAGTTGATGAGGACGATTTATCAAGGCGTCTTGCCCGAGCTCAGGCT
AGAGGNTAATC
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