FC920510

Overview
NameFC920510
Unique NameFC920510
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length754
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14154 contig Ccv1_Contig14154:1..755. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC920510 vs. ExPASy Swiss-Prot
Match: DHSA1_ARATH (Succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial OS=Arabidopsis thaliana GN=SDH1-1 PE=1 SV=1)

HSP 1 Score: 257.299 bits (656), Expect = 2.439e-85
Identity = 129/174 (74.14%), Postives = 137/174 (78.74%), Query Frame = 2 
Query:  146 MWRCVSRGLGLSSYRSKRSVSNDSLRSHFSRLFSTNST---GGYTIVDHTYDXXXXXXXXXXXXXXXXLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKVGR 658
            MWRCVSRG    + ++  S+ +    S FSR FST ST     YTIVDHTYD                LSEHGFNTACITKLFPTRSHTVAAQGGINAALGNM+EDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTE+GKIYQRAFGGQSLDFGK G+
Sbjct:    1 MWRCVSRGFRAPASKTS-SLFDGVSGSRFSRFFSTGSTDTRSSYTIVDHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMSEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEEGKIYQRAFGGQSLDFGKGGQ 173

HSP 2 Score: 80.1073 bits (196), Expect = 2.439e-85
Identity = 36/38 (94.74%), Postives = 36/38 (94.74%), Query Frame = 1 
Query:  640 FWKGGQAYRCACAADRTGHALLHTLYGQAMKHNTQXFV 753
            F KGGQAYRCACAADRTGHALLHTLYGQAMKHNTQ FV
Sbjct:  168 FGKGGQAYRCACAADRTGHALLHTLYGQAMKHNTQFFV 205
[Close]
BLAST of FC920510 vs. ExPASy Swiss-Prot
Match: DHSA_ORYSJ (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Oryza sativa subsp. japonica GN=SDH1 PE=2 SV=1)

HSP 1 Score: 250.366 bits (638), Expect = 4.960e-83
Identity = 128/172 (74.42%), Postives = 137/172 (79.65%), Query Frame = 2 
Query:  146 MWR-CVSRGLGLSSYRSKRSVSNDSLRSHFSRLFSTNSTGGYTIVDHTYDXXXXXXXXXXXXXXXXLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKVGR 658
            MWR CVSRGL   S    +  S+ +  S  +RLFST S+  YT+VDH+YD                LSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQD+IQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGK G+
Sbjct:    1 MWRGCVSRGL--RSLSKGKGSSSSAPVSAAARLFSTASSS-YTVVDHSYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDSIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQ 169

HSP 2 Score: 79.337 bits (194), Expect = 4.960e-83
Identity = 35/38 (92.11%), Postives = 36/38 (94.74%), Query Frame = 1 
Query:  640 FWKGGQAYRCACAADRTGHALLHTLYGQAMKHNTQXFV 753
            F KGGQAYRCACAADRTGHA+LHTLYGQAMKHNTQ FV
Sbjct:  164 FGKGGQAYRCACAADRTGHAMLHTLYGQAMKHNTQFFV 201
[Close]
BLAST of FC920510 vs. ExPASy Swiss-Prot
Match: DHSA2_ARATH (Succinate dehydrogenase [ubiquinone] flavoprotein subunit 2, mitochondrial OS=Arabidopsis thaliana GN=SDH1-2 PE=1 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 1.436e-79
Identity = 124/176 (70.45%), Postives = 133/176 (75.57%), Query Frame = 2 
Query:  146 MWRCVSRGLGLSSYRSKRSVSNDS-LRSHFSRLFSTNSTGG----YTIVDHTYDXXXXXXXXXXXXXXXXLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKVGR 658
            MWRC+       +  S+RS SN + + S  SR FS   + G    YTIVDHTYD                LSEHGFNTACITKLFPTRSHTVAAQGGINAALGNM+ DDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSL+FG  G+
Sbjct:    1 MWRCLR-----VASSSRRSESNGAFITSQLSRFFSAPPSAGDKSSYTIVDHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMSVDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLEFGIGGQ 171

HSP 2 Score: 77.0258 bits (188), Expect = 1.436e-79
Identity = 35/38 (92.11%), Postives = 35/38 (92.11%), Query Frame = 1 
Query:  640 FWKGGQAYRCACAADRTGHALLHTLYGQAMKHNTQXFV 753
            F  GGQAYRCACAADRTGHALLHTLYGQAMKHNTQ FV
Sbjct:  166 FGIGGQAYRCACAADRTGHALLHTLYGQAMKHNTQFFV 203
[Close]
BLAST of FC920510 vs. ExPASy Swiss-Prot
Match: DHSA_SCHPO (Probable succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Schizosaccharomyces pombe GN=sdh1 PE=2 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 1.089e-67
Identity = 101/155 (65.16%), Postives = 121/155 (78.06%), Query Frame = 2 
Query:  194 KRSVSNDSLRSHFSRLFSTNSTGGYTIVDHTYDXXXXXXXXXXXXXXXXLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKVGR 658
            K+  S+  LR+   +  ST+ +  Y ++DHTYD                L+E GFNTACITKLFPTRSHTVAAQGGINAALGNMT+DDWRWH YDTVKGSDWLGDQDAI YM +EAPKAV+ELE++G+PFSRT++GKIYQRAFGGQSL++GK G+
Sbjct:   27 KKIASSQPLRA---KQVSTSESVKYPVIDHTYDAIVVGAGGAGLRATFGLAEAGFNTACITKLFPTRSHTVAAQGGINAALGNMTKDDWRWHFYDTVKGSDWLGDQDAIHYMTKEAPKAVLELEHFGVPFSRTKEGKIYQRAFGGQSLEYGKGGQ 178

HSP 2 Score: 67.3958 bits (163), Expect = 1.089e-67
Identity = 27/38 (71.05%), Postives = 33/38 (86.84%), Query Frame = 1 
Query:  640 FWKGGQAYRCACAADRTGHALLHTLYGQAMKHNTQXFV 753
            + KGGQAYRCA  ADRTGH++LHTLYGQ++KHNT  F+
Sbjct:  173 YGKGGQAYRCAAVADRTGHSILHTLYGQSLKHNTNFFI 210
[Close]
BLAST of FC920510 vs. ExPASy Swiss-Prot
Match: DHSA_PONAB (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Pongo abelii GN=SDHA PE=2 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 1.411e-64
Identity = 97/138 (70.29%), Postives = 107/138 (77.54%), Query Frame = 2 
Query:  245 STNSTGGYTIVDHTYDXXXXXXXXXXXXXXXXLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKVGR 658
            S + +  Y +VDH +D                LSE GFNTAC+TKLFPTRSHTVAAQGGINAALGNM ED+WRWH YDTVKGSDWLGDQDAI YM  +AP AV+ELENYG+PFSRTEDGKIYQRAFGGQSL FGK G+
Sbjct:   48 SDSISAQYPVVDHEFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHTVAAQGGINAALGNMEEDNWRWHFYDTVKGSDWLGDQDAIHYMTEQAPAAVVELENYGMPFSRTEDGKIYQRAFGGQSLKFGKGGQ 185

HSP 2 Score: 62.7734 bits (151), Expect = 1.411e-64
Identity = 25/38 (65.79%), Postives = 33/38 (86.84%), Query Frame = 1 
Query:  640 FWKGGQAYRCACAADRTGHALLHTLYGQAMKHNTQXFV 753
            F KGGQA+RC C ADRTGH+LLHTLYG++++++T  FV
Sbjct:  180 FGKGGQAHRCCCVADRTGHSLLHTLYGRSLRYDTSYFV 217
[Close]
BLAST of FC920510 vs. ExPASy Swiss-Prot
Match: DHSA_MACFA (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Macaca fascicularis GN=SDHA PE=2 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 1.411e-64
Identity = 97/138 (70.29%), Postives = 107/138 (77.54%), Query Frame = 2 
Query:  245 STNSTGGYTIVDHTYDXXXXXXXXXXXXXXXXLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKVGR 658
            S + +  Y +VDH +D                LSE GFNTAC+TKLFPTRSHTVAAQGGINAALGNM ED+WRWH YDTVKGSDWLGDQDAI YM  +AP AV+ELENYG+PFSRTEDGKIYQRAFGGQSL FGK G+
Sbjct:   48 SDSISAQYPVVDHEFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHTVAAQGGINAALGNMEEDNWRWHFYDTVKGSDWLGDQDAIHYMTEQAPAAVVELENYGMPFSRTEDGKIYQRAFGGQSLKFGKGGQ 185

HSP 2 Score: 62.7734 bits (151), Expect = 1.411e-64
Identity = 25/38 (65.79%), Postives = 33/38 (86.84%), Query Frame = 1 
Query:  640 FWKGGQAYRCACAADRTGHALLHTLYGQAMKHNTQXFV 753
            F KGGQA+RC C ADRTGH+LLHTLYG++++++T  FV
Sbjct:  180 FGKGGQAHRCCCVADRTGHSLLHTLYGRSLRYDTSYFV 217
[Close]
BLAST of FC920510 vs. ExPASy Swiss-Prot
Match: DHSA_HUMAN (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Homo sapiens GN=SDHA PE=1 SV=2)

HSP 1 Score: 205.297 bits (521), Expect = 1.411e-64
Identity = 97/138 (70.29%), Postives = 107/138 (77.54%), Query Frame = 2 
Query:  245 STNSTGGYTIVDHTYDXXXXXXXXXXXXXXXXLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKVGR 658
            S + +  Y +VDH +D                LSE GFNTAC+TKLFPTRSHTVAAQGGINAALGNM ED+WRWH YDTVKGSDWLGDQDAI YM  +AP AV+ELENYG+PFSRTEDGKIYQRAFGGQSL FGK G+
Sbjct:   48 SDSISAQYPVVDHEFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHTVAAQGGINAALGNMEEDNWRWHFYDTVKGSDWLGDQDAIHYMTEQAPAAVVELENYGMPFSRTEDGKIYQRAFGGQSLKFGKGGQ 185

HSP 2 Score: 62.7734 bits (151), Expect = 1.411e-64
Identity = 25/38 (65.79%), Postives = 33/38 (86.84%), Query Frame = 1 
Query:  640 FWKGGQAYRCACAADRTGHALLHTLYGQAMKHNTQXFV 753
            F KGGQA+RC C ADRTGH+LLHTLYG++++++T  FV
Sbjct:  180 FGKGGQAHRCCCVADRTGHSLLHTLYGRSLRYDTSYFV 217
[Close]
BLAST of FC920510 vs. ExPASy Swiss-Prot
Match: DHSA_DANRE (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Danio rerio GN=sdha PE=2 SV=2)

HSP 1 Score: 204.527 bits (519), Expect = 2.400e-64
Identity = 102/171 (59.65%), Postives = 118/171 (69.01%), Query Frame = 2 
Query:  167 GLGLSSYRSKRSVSNDSLRSHFS-------RLFSTNSTGGYTIVDHTYDXXXXXXXXXXXXXXXXLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKVGR 658
            G  + S +S  +V   + + HFS          S   +  Y +VDH +D                LSE GFNTAC+TKLFPTRSHTVAAQGGINAALGNM +DDWRWH YDTVKGSDWLGDQDAI YM  +AP AV+ELEN+G+PFSRT+DGKIYQRAFGGQSL FGK G+
Sbjct:   12 GTKILSCKSLPAVCQANRQLHFSIYGKRGDAKISDGVSNQYPVVDHEFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHTVAAQGGINAALGNMEQDDWRWHFYDTVKGSDWLGDQDAIHYMTEQAPAAVVELENFGMPFSRTDDGKIYQRAFGGQSLKFGKGGQ 182

HSP 2 Score: 62.7734 bits (151), Expect = 2.400e-64
Identity = 25/38 (65.79%), Postives = 33/38 (86.84%), Query Frame = 1 
Query:  640 FWKGGQAYRCACAADRTGHALLHTLYGQAMKHNTQXFV 753
            F KGGQA+RC C ADRTGH+LLHTLYG++++++T  FV
Sbjct:  177 FGKGGQAHRCCCVADRTGHSLLHTLYGRSLRYDTSYFV 214
[Close]
BLAST of FC920510 vs. ExPASy Swiss-Prot
Match: DHSA_XENTR (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Xenopus tropicalis GN=sdha PE=2 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 4.080e-64
Identity = 99/146 (67.81%), Postives = 108/146 (73.97%), Query Frame = 2 
Query:  221 RSHFSRLFSTNSTGGYTIVDHTYDXXXXXXXXXXXXXXXXLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKVGR 658
            R   S   S + +  Y +VDH +D                LSE GFNTACITKLFPTRSHTVAAQGGINAALGNM +DDWRWH YDTVKGSDWLGDQDAI YM  +AP +VIELENYG+PFSRTE GKIYQRAFGGQSL FGK G+
Sbjct:   43 RKDTSAKLSDSISTQYPVVDHDFDAVVVGAGGAGLRAAFGLSEAGFNTACITKLFPTRSHTVAAQGGINAALGNMEDDDWRWHFYDTVKGSDWLGDQDAIHYMTEQAPASVIELENYGMPFSRTEQGKIYQRAFGGQSLKFGKGGQ 188

HSP 2 Score: 62.7734 bits (151), Expect = 4.080e-64
Identity = 25/38 (65.79%), Postives = 33/38 (86.84%), Query Frame = 1 
Query:  640 FWKGGQAYRCACAADRTGHALLHTLYGQAMKHNTQXFV 753
            F KGGQA+RC C ADRTGH+LLHTLYG++++++T  FV
Sbjct:  183 FGKGGQAHRCCCVADRTGHSLLHTLYGRSLRYDTSYFV 220
[Close]
BLAST of FC920510 vs. ExPASy Swiss-Prot
Match: DHSA_BOVIN (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Bos taurus GN=SDHA PE=1 SV=3)

HSP 1 Score: 203.756 bits (517), Expect = 4.080e-64
Identity = 95/131 (72.52%), Postives = 104/131 (79.39%), Query Frame = 2 
Query:  266 YTIVDHTYDXXXXXXXXXXXXXXXXLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKVGR 658
            Y +VDH +D                LSE GFNTAC+TKLFPTRSHTVAAQGGINAALGNM ED+WRWH YDTVKGSDWLGDQDAI YM  +AP +V+ELENYG+PFSRTEDGKIYQRAFGGQSL FGK G+
Sbjct:   56 YPVVDHEFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHTVAAQGGINAALGNMEEDNWRWHFYDTVKGSDWLGDQDAIHYMTEQAPASVVELENYGMPFSRTEDGKIYQRAFGGQSLKFGKGGQ 186

HSP 2 Score: 62.7734 bits (151), Expect = 4.080e-64
Identity = 25/38 (65.79%), Postives = 33/38 (86.84%), Query Frame = 1 
Query:  640 FWKGGQAYRCACAADRTGHALLHTLYGQAMKHNTQXFV 753
            F KGGQA+RC C ADRTGH+LLHTLYG++++++T  FV
Sbjct:  181 FGKGGQAHRCCCVADRTGHSLLHTLYGRSLRYDTSYFV 218
The following BLAST results are available for this feature:
BLAST of FC920510 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
DHSA1_ARATH2.439e-8574.14Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
DHSA_ORYSJ4.960e-8374.42Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
DHSA2_ARATH1.436e-7970.45Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
DHSA_SCHPO1.089e-6765.16Probable succinate dehydrogenase [ubiquinone] flav... [more]
DHSA_PONAB1.411e-6470.29Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
DHSA_MACFA1.411e-6470.29Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
DHSA_HUMAN1.411e-6470.29Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
DHSA_DANRE2.400e-6459.65Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
DHSA_XENTR4.080e-6467.81Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
DHSA_BOVIN4.080e-6472.52Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]

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Properties
Property NameValue
Genbank descriptionC32009D04EF RVDevelop1 Citrus clementina cDNA clone C32009D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920510 ID=FC920510; Name=FC920510; organism=Citrus clementina; type=EST; length=754bp
GGTCCGAGCATTCGAGTCAGGTTCCCATCTCTCGTCTCCCCGCTGCCGGT
CCTCCATAGCCTGTCTGTCATTGTAGCAGCCTTTGCGATCTATCGAGTAA
TAACTAATTAGCAAGAGATTGGGAGAGTAAAACACAGATACCGAGATGTG
GCGCTGCGTTTCTCGTGGCCTTGGCTTATCTTCTTATCGTTCAAAACGAT
CAGTCTCCAATGACTCTCTCAGATCTCATTTCTCCAGATTGTTCTCCACC
AATTCCACTGGAGGATACACAATAGTGGATCATACATATGACGCTGTAGT
GGTTGGAGCTGGCGGTGCTGGGCTGAGAGCAGCGATTGGGCTTTCAGAGC
ATGGCTTCAACACCGCTTGCATTACCAAGCTCTTCCCTACTCGTTCTCAC
ACTGTTGCGGCTCAGGGTGGTATTAATGCTGCTTTAGGAAACATGACTGA
AGATGACTGGAGGTGGCACATGTATGACACAGTCAAGGGAAGTGATTGGT
TAGGTGATCAGGATGCTATTCAATATATGTGTAGGGAGGCACCAAAAGCA
GTGATTGAGCTGGAGAATTACGGGTTACCATTTTCTCGGACAGAAGATGG
AAAAATATACCAGCGTGCATTTGGCGGTCAAAGTCTTGATTTTGGAAAGG
TGGGCAGGCGTACCGTTGTGCATGTGCTGCTGACAGAACTGGTCATGCTC
TATTGCATACCCTCTATGGCCAGGCTATGAAACATAATACACAGNTCTTT
GTGG
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