FC920531

Overview
NameFC920531
Unique NameFC920531
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920531 vs. ExPASy Swiss-Prot
Match: Y1010_HAEIN (Uncharacterized oxidoreductase HI1010 OS=Haemophilus influenzae GN=HI1010 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.311e-19
Identity = 57/206 (27.67%), Postives = 103/206 (50.00%), Query Frame = 2
Query:   89 VGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIR-SASPMDAGKDVSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTENDETACVVDAYVSRGMSEVFNGKFMITTSGRSNAIERARPFLSAMCKTLYIFEGELGAGSKIKMVNDLLEGVHLIASVEAISLGVQFGIHPWXLYDI 703
            V  +GL    +  A S I +G      +++   ++K    G    +A+  D   ++ A+V+++ +  Q + + FG  G+ K L+ G  +++ ST+     Q + +  TE      ++DA VS G ++   G+  +  SG   A E  +P L A    +Y    E+G G+ +K+V+ LL GVH+ A  EA++L  + GI    +YD+
Sbjct:    8 VAVIGLGSMGMGAAVSCINAGLTTYGIDLNPVALEKLKAAGAKAVAANGYDFAHELDAVVILVVNAAQANAVLFGENGIAKKLKAGTAVMVSSTMAAQDAQIISQKLTELG--LIMLDAPVSGGAAKALKGEMTVMASGSKQAFELLQPVLDATAAKVYNIGEEIGLGATVKIVHQLLAGVHIAAGAEAMALASKAGIPLDVMYDV 211          
BLAST of FC920531 vs. ExPASy Swiss-Prot
Match: YGBJ_ECOLI (Uncharacterized oxidoreductase ygbJ OS=Escherichia coli (strain K12) GN=ygbJ PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.506e-19
Identity = 62/207 (29.95%), Postives = 102/207 (49.28%), Query Frame = 2
Query:   89 VGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLG--GIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTENDETACVVDAYVSRGMSEVFNGKFMITTSGRSNAIERARPFLSAMCKTLYIFEGELGAGSKIKMVNDLLEGVHLIASVEAISLGVQFGIHPWXLYDI 703
            VG VGL    +  A S +R+G      +++          G  G+   +   A K + AL+V++ +  Q+  + FG  GV + L+ G  +++ STI  +  Q++       D    ++DA VS G  +  NG+  +  SG   A ER  P L A+   +Y    E G GS +K+++ LL GVH+ A  EA++L  + GI    +YD+
Sbjct:    9 VGIVGLGSMGMGAALSYVRAGLSTWGADLNSNACATLKEAGACGVSDNAATFAEK-LDALLVLVVNAAQVKQVLFGETGVAQHLKPGTAVMVSSTIASADAQEIATALAGFDLE--MLDAPVSGGAVKAANGEMTVMASGSDIAFERLAPVLEAVAGKVYRIGAEPGLGSTVKIIHQLLAGVHIAAGAEAMALAARAGIPLDVMYDV 212          
BLAST of FC920531 vs. ExPASy Swiss-Prot
Match: 3HIDH_RAT (3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Hibadh PE=1 SV=3)

HSP 1 Score: 93.5893 bits (231), Expect = 1.110e-18
Identity = 61/211 (28.91%), Postives = 109/211 (51.66%), Query Frame = 2
Query:   77 MASK--VGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTENDETACVVDAYVSRGMSEVFNGKFMITTSGRSNAIERARPFLSAMCKTLYIFEGELGAGSKIKMVNDLLEGVHLIASVEAISLGVQFGIHPWXLYDI 703
            MASK  VGF+GL      MA +LI+ GY +  +++   +  +F   G   ++SP D  +    ++ ++       +++ G  G+LK ++KG+++I  STI PS  ++L K   +    A  +DA VS G+    +G       G  N    A+  L  M   + ++ G +G+G   K+ N++L  + +I + EA++LG++ G+ P  L  I
Sbjct:   35 MASKTPVGFIGLGNMGNPMAKNLIKHGYPLILYDVFPDVCKEFKEAGEQVASSPADVAEKADRIITMLPSSMNSIEVYSGANGILKKVKKGSLLIDSSTIDPSVSKELAKEVEKMG--AVFMDAPVSGGVGAARSGNLTFMVGGVENEFAAAQELLGCMGSNV-LYCGAVGSGQSAKICNNMLLAISMIGTAEAMNLGIRSGLDPKLLAKI 242          
BLAST of FC920531 vs. ExPASy Swiss-Prot
Match: 3HIDH_ARATH (Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Arabidopsis thaliana GN=At4g20930 PE=2 SV=3)

HSP 1 Score: 90.8929 bits (224), Expect = 7.193e-18
Identity = 66/227 (29.07%), Postives = 108/227 (47.58%), Query Frame = 2
Query:   53 SNFTFNSKMASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGVLKGLQ--KGAVIILQSTILPSHMQKLE--------KTFTENDETACVVDAYVSRGMSEVFNGKFMITTSGRSNAIERARPFLSAMCKTLYIFEGELGAGSKIKMVNDLLEGVHLIASVEAISLGVQFGIHPWXLYDI 703
            S+ + NS     VGF+GL      M  +LIR+GYKV   +I+  ++  F  +G     +P +  +D   ++ ++     + D++ G  G+L G    + A+ I  STI P   +K+         K   +N E   ++DA VS G+     G       G  +A   ARP L +M +T  I+ G  G GS  K+ N+L   V ++ + EA++LG   GI    L ++
Sbjct:   28 SSSSQNSNQFQNVGFIGLGNMGFRMVNNLIRAGYKVTVHDINRDVMKMFTEMGVSSRETPYEVAQDSEVVITMLPSSSHVMDVYTGTNGLLLGENDIRPALFIDSSTIDPQTTRKISLAVSNCNLKEKRDNWEKPVMLDAPVSGGVLAAEAGTLTFMVGGPEDAYLAARPILQSMGRT-SIYCGGSGNGSAAKICNNLAMAVSMLGTSEALALGQSLGISASTLTEV 253          
BLAST of FC920531 vs. ExPASy Swiss-Prot
Match: 3HIDH_MOUSE (3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Mus musculus GN=Hibadh PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.093e-17
Identity = 58/211 (27.49%), Postives = 108/211 (51.18%), Query Frame = 2
Query:   77 MASK--VGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTENDETACVVDAYVSRGMSEVFNGKFMITTSGRSNAIERARPFLSAMCKTLYIFEGELGAGSKIKMVNDLLEGVHLIASVEAISLGVQFGIHPWXLYDI 703
            MASK  VGF+GL      MA +L++ GY +  +++   +  +F   G   ++SP +  +    ++ ++       +++ G  G+LK ++KG+++I  STI PS  ++L K   +    A  +DA VS G+    +G       G  +    A+  L  M   + ++ G +G G   K+ N++L  + +I + EA++LG++ G+ P  L  I
Sbjct:   35 MASKTPVGFIGLGNMGNPMAKNLMKHGYPLILYDVFPDVCKEFKEAGEQVASSPAEVAEKADRIITMLPSSMNAVEVYSGANGILKKVKKGSLLIDSSTIDPSVSKELAKEVEKMG--AVFMDAPVSGGVGAARSGNLTFMVGGVEDEFAAAQELLECMGSNV-VYCGAVGTGQSAKICNNMLLAISMIGTAEAMNLGIRSGLDPKLLAKI 242          
BLAST of FC920531 vs. ExPASy Swiss-Prot
Match: YKWC_BACSU (Uncharacterized oxidoreductase ykwC OS=Bacillus subtilis GN=ykwC PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.039e-16
Identity = 49/203 (24.14%), Postives = 93/203 (45.81%), Query Frame = 2
Query:   77 MASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTENDETACVVDAYVSRGMSEVFNGKFMITTSGRSNAIERARPFLSAMCKTLYIFEGELGAGSKIKMVNDLLEGVHLIASVEAISLGVQFGIHP 685
            M   +GF+GL      MA+ ++  G+ V  +  +    +     G I   +  D  K+   ++ ++ +   +++++FG  G+++  ++GA +I  +T  PS  +K+ +   E  +    +DA VS G     NG   I   G   A E   P  S M + +  ++G  G+G   KM N +     +I   EA++   + G+ P
Sbjct:    1 MKKTIGFIGLGVMGKSMASHILNDGHPVLVYTRTKEKAESILQKGAIWKDTVKDLSKEADVIITMVGYPSDVEEVYFGSNGIIENAKEGAYLIDMTTSKPSLAKKIAEAAKE--KALFALDAPVSGGDIGAQNGTLAIMVGGEKEAFEACMPIFSLMGENIQ-YQGPAGSGQHTKMCNQIAIAAGMIGVAEAMAYAQKSGLEP 200          
BLAST of FC920531 vs. ExPASy Swiss-Prot
Match: YIHU_SHIFL (Uncharacterized oxidoreductase yihU OS=Shigella flexneri GN=yihU PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.039e-16
Identity = 53/191 (27.75%), Postives = 94/191 (49.21%), Query Frame = 2
Query:   89 VGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTENDETACVVDAYVSRGMSEVFNGKFMITTSGRSNAIERARPFLSAMCKTLYIFEGELGAGSKIKMVNDLLEGVHLIASVEAISL 661
            + F+GL +    MA++L++ G++++ F+++   V      G   +A+P  A KD   ++ ++ + D + ++ FG  GV +GL   A++I  STI P    KL         +  ++D  V R  +    G  ++   G +  +ERA P L AM   L I  G  G G ++K++N+ +       S EA  L
Sbjct:    4 IAFIGLGQMGSPMASNLLQQGHQLRVFDVNAEAVRHLVDKGATPAANPAQAAKDAEFIITMLPNGDLVRNVLFGENGVCEGLSTDALVIDMSTIHPLQTDKLIADMQAKGFS--MMDVPVGRTSANAITGTLLLLAGGTAEQVERATPILMAMGSEL-INAGGPGMGIRVKLINNYMSIALNALSAEAAVL 191          
BLAST of FC920531 vs. ExPASy Swiss-Prot
Match: YIHU_ECOLI (Uncharacterized oxidoreductase yihU OS=Escherichia coli (strain K12) GN=yihU PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.039e-16
Identity = 53/191 (27.75%), Postives = 94/191 (49.21%), Query Frame = 2
Query:   89 VGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTENDETACVVDAYVSRGMSEVFNGKFMITTSGRSNAIERARPFLSAMCKTLYIFEGELGAGSKIKMVNDLLEGVHLIASVEAISL 661
            + F+GL +    MA++L++ G++++ F+++   V      G   +A+P  A KD   ++ ++ + D + ++ FG  GV +GL   A++I  STI P    KL         +  ++D  V R  +    G  ++   G +  +ERA P L AM   L I  G  G G ++K++N+ +       S EA  L
Sbjct:    4 IAFIGLGQMGSPMASNLLQQGHQLRVFDVNAEAVRHLVDKGATPAANPAQAAKDAEFIITMLPNGDLVRNVLFGENGVCEGLSTDALVIDMSTIHPLQTDKLIADMQAKGFS--MMDVPVGRTSANAITGTLLLLAGGTAEQVERATPILMAMGSEL-INAGGPGMGIRVKLINNYMSIALNALSAEAAVL 191          
BLAST of FC920531 vs. ExPASy Swiss-Prot
Match: 3HIDH_DICDI (Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Dictyostelium discoideum GN=hibA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.772e-16
Identity = 56/217 (25.81%), Postives = 108/217 (49.77%), Query Frame = 2
Query:   56 NFTFNSKMASK-VGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTENDETACVVDAYVSRGMSEVFNGKFMITTSGRSNAIERARPFLSAMCKTLYIFEGELGAGSKIKMVNDLLEGVHLIASVEAISLGVQFGIHPWXLYDI 703
            N  + S  +SK VGF+GL       A +LI+ G+ +  F++S   +++    G   + SP +  K+   +V ++     + +++ G  G+ + ++ G +++  STI P+  +++     ++  T  ++D  VS G      G       G       A+ +L  M K + +  G++G G   K+ N+L+ G+ +IA  EA++LGV+ G+ P  L  I
Sbjct:   13 NVRYMSTSSSKTVGFIGLGNMGGHQAINLIKKGHNLIVFDMSKDNMNRLKEKGAKIANSPAEVAKEADVIVTMLPASAHVKNVYCGENGIFQTVRPGTLLLDSSTIDPATAREVASIAKKHQST--MLDCPVSGGTGGAEAGTLTFMVGGSEQDFNTAKTYLECMGKNI-VHCGDVGTGQVAKVCNNLVLGISMIAVSEAMNLGVKQGMDPKKLAGI 226          
BLAST of FC920531 vs. ExPASy Swiss-Prot
Match: 3HIDH_BOVIN (3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Bos taurus GN=HIBADH PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.022e-16
Identity = 58/211 (27.49%), Postives = 103/211 (48.82%), Query Frame = 2
Query:   77 MASK--VGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTENDETACVVDAYVSRGMSEVFNGKFMITTSGRSNAIERARPFLSAMCKTLYIFEGELGAGSKIKMVNDLLEGVHLIASVEAISLGVQFGIHPWXLYDI 703
            MASK  VGF+G+      MA +L++ GY +  +++      +F   G    +SP D  +    ++ ++       + + G  G+LK ++KG+++I  STI P   ++L K   +    A  +DA VS G+    +G       G       A+  L  M   + ++ G +G G   K+ N+LL  + +I + EA++LG++ G+ P  L  I
Sbjct:   36 MASKTPVGFIGVGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFLDAGEQVVSSPADVAEKADRIITMLPTSINAIEAYSGANGILKKVKKGSLLIDSSTIDPMVSKELAKEVEKMG--AVFMDAPVSGGVGAARSGNLTFMVGGVEEEFAAAQELLGCMGSNV-VYCGAVGTGQAAKICNNLLLAISMIGTAEAMNLGIRLGLDPKLLAKI 243          
The following BLAST results are available for this feature:
BLAST of FC920531 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
Y1010_HAEIN1.311e-1927.67Uncharacterized oxidoreductase HI1010 OS=Haemophil... [more]
YGBJ_ECOLI6.506e-1929.95Uncharacterized oxidoreductase ygbJ OS=Escherichia... [more]
3HIDH_RAT1.110e-1828.913-hydroxyisobutyrate dehydrogenase, mitochondrial ... [more]
3HIDH_ARATH7.193e-1829.07Probable 3-hydroxyisobutyrate dehydrogenase, mitoc... [more]
3HIDH_MOUSE2.093e-1727.493-hydroxyisobutyrate dehydrogenase, mitochondrial ... [more]
YKWC_BACSU1.039e-1624.14Uncharacterized oxidoreductase ykwC OS=Bacillus su... [more]
YIHU_SHIFL1.039e-1627.75Uncharacterized oxidoreductase yihU OS=Shigella fl... [more]
YIHU_ECOLI1.039e-1627.75Uncharacterized oxidoreductase yihU OS=Escherichia... [more]
3HIDH_DICDI1.772e-1625.81Probable 3-hydroxyisobutyrate dehydrogenase, mitoc... [more]
3HIDH_BOVIN3.022e-1627.493-hydroxyisobutyrate dehydrogenase, mitochondrial ... [more]

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Properties
Property NameValue
Genbank descriptionC32009F03EF RVDevelop1 Citrus clementina cDNA clone C32009F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920531 ID=FC920531; Name=FC920531; organism=Citrus clementina; type=EST; length=703bp
AAAGTTGTTAATTGATAAATATCAATAACAGAAAATCTGAAACACTTCGT
GCAGCAATTTCACTTTCAATTCGAAAATGGCGTCCAAAGTTGGGTTCGTG
GGATTGGATGAGTACAGCGTGGACATGGCCGCTTCGCTTATTCGCTCTGG
ATACAAAGTCCAAGCGTTTGAGATATCCGATCCCTTGGTAGATAAATTTT
TTATGCTAGGGGGAATCAGAAGTGCAAGCCCTATGGATGCAGGGAAAGAT
GTTTCAGCTTTAGTTGTGGTAATCTCTCATGTAGATCAAATTGATGACAT
ATTCTTTGGTCACGAGGGTGTACTTAAAGGATTACAAAAAGGCGCAGTCA
TAATTCTTCAATCAACTATCTTGCCATCGCATATGCAAAAACTAGAGAAG
ACTTTCACAGAGAATGATGAGACAGCTTGTGTGGTTGATGCATATGTCTC
TAGGGGAATGTCTGAGGTTTTCAATGGAAAATTTATGATTACAACCTCAG
GAAGGTCAAATGCCATTGAGAGGGCGAGACCCTTTCTCTCTGCAATGTGC
AAAACATTATACATTTTTGAGGGTGAACTTGGTGCTGGCAGCAAAATCAA
AATGGTCAATGATCTGCTCGAGGGCGTTCATCTTATTGCTTCTGTAGAGG
CTATTTCTCTTGGAGTTCAATTTGGGATTCATCCATGGGNTCTCTATGAT
ATC
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