FC920532

Overview
NameFC920532
Unique NameFC920532
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length730
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920532_ssr140 microsatellite FC920532_ssr140:140..151. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC920532 vs. ExPASy Swiss-Prot
Match: LC7L3_PONAB (Luc7-like protein 3 OS=Pongo abelii GN=LUC7L3 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.030e-22
Identity = 63/170 (37.06%), Postives = 94/170 (55.29%), Query Frame = 2
Query:  191 LLDELMGAARNLTXXXXXXXXXXXXXXXXVCPFYMVRFCPHDLFVNTRSDLGPCPRIHDQKLKESFEKSPRHDAYVPKFEAELAQFCEKLVMDLD--XXXXXXXXXLSQEVEPAPPPPISAEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILKCEKTTL 694
            LLDELMG  RNL                 VC +Y+  FCP +LF NTRSDLGPC +IHD+ L++ +EKS R       +E +  ++ + L+ +++           LSQ  + +     + +  E++ VL +KI  LL+Q+E LG  GKV+EA+ +M+ VE LK E+  L
Sbjct:    7 LLDELMGRDRNLAPDEKRSNVRWDHES--VCKYYLCGFCPAELFTNTRSDLGPCEKIHDENLRKQYEKSSRF--MKVGYERDFLRYLQSLLAEVERRIRRGHARLALSQNQQSSGAAGPTGKNEEKIQVLTDKIDVLLQQIEELGSEGKVEEAQGMMKLVEQLKEERELL 172          
BLAST of FC920532 vs. ExPASy Swiss-Prot
Match: LC7L3_MOUSE (Luc7-like protein 3 OS=Mus musculus GN=Luc7l3 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.030e-22
Identity = 63/170 (37.06%), Postives = 94/170 (55.29%), Query Frame = 2
Query:  191 LLDELMGAARNLTXXXXXXXXXXXXXXXXVCPFYMVRFCPHDLFVNTRSDLGPCPRIHDQKLKESFEKSPRHDAYVPKFEAELAQFCEKLVMDLD--XXXXXXXXXLSQEVEPAPPPPISAEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILKCEKTTL 694
            LLDELMG  RNL                 VC +Y+  FCP +LF NTRSDLGPC +IHD+ L++ +EKS R       +E +  ++ + L+ +++           LSQ  + +     + +  E++ VL +KI  LL+Q+E LG  GKV+EA+ +M+ VE LK E+  L
Sbjct:    7 LLDELMGRDRNLAPDEKRSNVRWDHES--VCKYYLCGFCPAELFTNTRSDLGPCEKIHDENLRKQYEKSSRF--MKVGYERDFLRYLQSLLAEVERRIRRGHARLALSQNQQSSGAAGPTGKNEEKIQVLTDKIDVLLQQIEELGSEGKVEEAQGMMKLVEQLKEERELL 172          
BLAST of FC920532 vs. ExPASy Swiss-Prot
Match: LC7L3_HUMAN (Luc7-like protein 3 OS=Homo sapiens GN=LUC7L3 PE=1 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 1.030e-22
Identity = 63/170 (37.06%), Postives = 94/170 (55.29%), Query Frame = 2
Query:  191 LLDELMGAARNLTXXXXXXXXXXXXXXXXVCPFYMVRFCPHDLFVNTRSDLGPCPRIHDQKLKESFEKSPRHDAYVPKFEAELAQFCEKLVMDLD--XXXXXXXXXLSQEVEPAPPPPISAEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILKCEKTTL 694
            LLDELMG  RNL                 VC +Y+  FCP +LF NTRSDLGPC +IHD+ L++ +EKS R       +E +  ++ + L+ +++           LSQ  + +     + +  E++ VL +KI  LL+Q+E LG  GKV+EA+ +M+ VE LK E+  L
Sbjct:    7 LLDELMGRDRNLAPDEKRSNVRWDHES--VCKYYLCGFCPAELFTNTRSDLGPCEKIHDENLRKQYEKSSRF--MKVGYERDFLRYLQSLLAEVERRIRRGHARLALSQNQQSSGAAGPTGKNEEKIQVLTDKIDVLLQQIEELGSEGKVEEAQGMMKLVEQLKEERELL 172          
BLAST of FC920532 vs. ExPASy Swiss-Prot
Match: LC7L3_BOVIN (Luc7-like protein 3 OS=Bos taurus GN=LUC7L3 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.030e-22
Identity = 63/170 (37.06%), Postives = 94/170 (55.29%), Query Frame = 2
Query:  191 LLDELMGAARNLTXXXXXXXXXXXXXXXXVCPFYMVRFCPHDLFVNTRSDLGPCPRIHDQKLKESFEKSPRHDAYVPKFEAELAQFCEKLVMDLD--XXXXXXXXXLSQEVEPAPPPPISAEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILKCEKTTL 694
            LLDELMG  RNL                 VC +Y+  FCP +LF NTRSDLGPC +IHD+ L++ +EKS R       +E +  ++ + L+ +++           LSQ  + +     + +  E++ VL +KI  LL+Q+E LG  GKV+EA+ +M+ VE LK E+  L
Sbjct:    7 LLDELMGRDRNLAPDEKRSNVRWDHES--VCKYYLCGFCPAELFTNTRSDLGPCEKIHDENLRKQYEKSSRF--MKVGYERDFLRYLQSLLAEVERRIRRGHARLALSQNQQSSGAAGPTGKNEEKIQVLTDKIDVLLQQIEELGSEGKVEEAQGMMKLVEQLKEERELL 172          
BLAST of FC920532 vs. ExPASy Swiss-Prot
Match: LUC7L_DICDI (Luc7-like protein OS=Dictyostelium discoideum GN=crop PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.103e-16
Identity = 63/208 (30.29%), Postives = 96/208 (46.15%), Query Frame = 2
Query:  173 MDAQRALLDELMGAARNLTXXXXXXXXXXXXXXXXVCPFYMVRFCPHDLFVNTR-SDLGPCPRIHDQKLKESFEKSPRHDAYVPKFEAELAQFCEKLVMDLDXXXXXXXXXLSQEVE--------PAPPPPISA------------EKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILKCEKTTL--TQQSQNDKVLM 727
            MDA RA LDE +G  RNL                 +C F++   CPH+LF N    DLGPC ++HD+   + ++ +   D Y   +E E  +  E L+ D D         L Q           P     IS             E++ +++ L+ KI+ LL++ E LGE G++ EA+ALM + + LK +K  L   +Q +N+   M
Sbjct:    1 MDAIRAQLDEFLGKDRNLLPKDRIKVENDFNDPD-ICKFFLCGLCPHELFTNANIRDLGPCSKLHDENCVKQYQNNKDKDKY--DYEREWVRVIEGLISDNDKKIKRNKERLLQNPNGDANHHGGPIQQQSISQLDDEEGGLLPDKEQNSKITELDLKIQELLKKAEELGEEGQITEAQALMTEADELKNQKVELEKIEQEKNENKRM 205          
BLAST of FC920532 vs. ExPASy Swiss-Prot
Match: LUC7L_MOUSE (Putative RNA-binding protein Luc7-like 1 OS=Mus musculus GN=Luc7l PE=2 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 7.148e-16
Identity = 57/180 (31.67%), Postives = 88/180 (48.89%), Query Frame = 2
Query:  185 RALLDELMGAARNLTXXXXXXXXXXXXXXXXVCPFYMVRFCPHDLFVNTRSDLGPCPRIHDQKLKESFE-KSPRHDAYVPKFEAELAQFCEKLVMDLDXXXXXXXXXLSQEVEPAPPPPISAE---KSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILKCEKTTLTQQSQN 712
            RALLD+LMG AR+                  VC  +++  CPHD+   TR DLG C +IHD  L+  +E  S   D +   FE +     E  + + D         L++  E      ISAE   K+E++  L E+I  LL + E LG  G VDE++ ++ +VE ++ +K    ++ +N
Sbjct:    8 RALLDQLMGTARD----GDETRQRVKFTDDRVCKSHLLDCCPHDILAGTRMDLGECTKIHDLALRADYEIASKERDLF---FELDAMDHLESFIAECDRRTELAKKRLAETQE-----EISAEVSAKAEKVHELNEEIGKLLAKAEQLGAEGNVDESQKILMEVEKVRAKKKEAEEEYRN 175          
BLAST of FC920532 vs. ExPASy Swiss-Prot
Match: LUC7L_HUMAN (Putative RNA-binding protein Luc7-like 1 OS=Homo sapiens GN=LUC7L PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.148e-16
Identity = 57/180 (31.67%), Postives = 88/180 (48.89%), Query Frame = 2
Query:  185 RALLDELMGAARNLTXXXXXXXXXXXXXXXXVCPFYMVRFCPHDLFVNTRSDLGPCPRIHDQKLKESFE-KSPRHDAYVPKFEAELAQFCEKLVMDLDXXXXXXXXXLSQEVEPAPPPPISAE---KSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILKCEKTTLTQQSQN 712
            RALLD+LMG AR+                  VC  +++  CPHD+   TR DLG C +IHD  L+  +E  S   D +   FE +     E  + + D         L++  E      ISAE   K+E++  L E+I  LL + E LG  G VDE++ ++ +VE ++ +K    ++ +N
Sbjct:    8 RALLDQLMGTARD----GDETRQRVKFTDDRVCKSHLLDCCPHDILAGTRMDLGECTKIHDLALRADYEIASKERDLF---FELDAMDHLESFIAECDRRTELAKKRLAETQE-----EISAEVSAKAEKVHELNEEIGKLLAKAEQLGAEGNVDESQKILMEVEKVRAKKKEAEEEYRN 175          
BLAST of FC920532 vs. ExPASy Swiss-Prot
Match: LC7L2_MOUSE (Putative RNA-binding protein Luc7-like 2 OS=Mus musculus GN=Luc7l2 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.348e-14
Identity = 53/179 (29.61%), Postives = 87/179 (48.60%), Query Frame = 2
Query:  185 RALLDELMGAARNLTXXXXXXXXXXXXXXXXVCPFYMVRFCPHDLFVNTRSDLGPCPRIHDQKLKESFEKSPRHDAYVPKFEAELAQFCEKLVMDLDXXXXXXXXXLSQEVEPAPPPPISAE---KSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILKCEKTTLTQQSQN 712
            RA+LD+LMG +R+                  VC  +++  CPHD+   TR DLG C ++HD  L+  +E + +   +   FE +     +  + D D         L++  E      ISAE   K+E++  L E+I  LL +VE LG  G V+E++ +M +VE  + +K    +  +N
Sbjct:    8 RAMLDQLMGTSRD----GDTTRQRIKFSDDRVCKSHLLNCCPHDVLSGTRMDLGECLKVHDLALRADYEIASKEQDFF--FELDAMDHLQSFIADCDRRTEVSKKRLAETQE-----EISAEVAAKAERVHELNEEIGKLLAKVEQLGAEGNVEESQKVMDEVEKARAKKREAEEVYRN 175          
BLAST of FC920532 vs. ExPASy Swiss-Prot
Match: LC7L2_HUMAN (Putative RNA-binding protein Luc7-like 2 OS=Homo sapiens GN=LUC7L2 PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.348e-14
Identity = 53/179 (29.61%), Postives = 87/179 (48.60%), Query Frame = 2
Query:  185 RALLDELMGAARNLTXXXXXXXXXXXXXXXXVCPFYMVRFCPHDLFVNTRSDLGPCPRIHDQKLKESFEKSPRHDAYVPKFEAELAQFCEKLVMDLDXXXXXXXXXLSQEVEPAPPPPISAE---KSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILKCEKTTLTQQSQN 712
            RA+LD+LMG +R+                  VC  +++  CPHD+   TR DLG C ++HD  L+  +E + +   +   FE +     +  + D D         L++  E      ISAE   K+E++  L E+I  LL +VE LG  G V+E++ +M +VE  + +K    +  +N
Sbjct:    8 RAMLDQLMGTSRD----GDTTRQRIKFSDDRVCKSHLLNCCPHDVLSGTRMDLGECLKVHDLALRADYEIASKEQDFF--FELDAMDHLQSFIADCDRRTEVAKKRLAETQE-----EISAEVAAKAERVHELNEEIGKLLAKVEQLGAEGNVEESQKVMDEVEKARAKKREAEEVYRN 175          
The following BLAST results are available for this feature:
BLAST of FC920532 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
LC7L3_PONAB1.030e-2237.06Luc7-like protein 3 OS=Pongo abelii GN=LUC7L3 PE=2... [more]
LC7L3_MOUSE1.030e-2237.06Luc7-like protein 3 OS=Mus musculus GN=Luc7l3 PE=1... [more]
LC7L3_HUMAN1.030e-2237.06Luc7-like protein 3 OS=Homo sapiens GN=LUC7L3 PE=1... [more]
LC7L3_BOVIN1.030e-2237.06Luc7-like protein 3 OS=Bos taurus GN=LUC7L3 PE=2 S... [more]
LUC7L_DICDI1.103e-1630.29Luc7-like protein OS=Dictyostelium discoideum GN=c... [more]
LUC7L_MOUSE7.148e-1631.67Putative RNA-binding protein Luc7-like 1 OS=Mus mu... [more]
LUC7L_HUMAN7.148e-1631.67Putative RNA-binding protein Luc7-like 1 OS=Homo s... [more]
LC7L2_MOUSE1.348e-1429.61Putative RNA-binding protein Luc7-like 2 OS=Mus mu... [more]
LC7L2_HUMAN1.348e-1429.61Putative RNA-binding protein Luc7-like 2 OS=Homo s... [more]
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Properties
Property NameValue
Genbank descriptionC32009F04EF RVDevelop1 Citrus clementina cDNA clone C32009F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920532 ID=FC920532; Name=FC920532; organism=Citrus clementina; type=EST; length=730bp
GGCTGCTTTACGCCTTTACCACTTTGTTCATCAAAACCTAAAATCACTCC
CGAAAAAATCCACTAAAAAATACCCAATTCTCTCAAACCCTAATAGCCCT
CCCATTATAGTTATATATAAATCCAACTAAGTTATCTTAATTTATTTATT
TTTTTTCCTTTAACACAGTATCATGGACGCTCAGCGAGCTCTGCTAGACG
AACTCATGGGCGCAGCTCGAAATTTGACCGAAGAAGAGAAAAAAGAGTAC
AAAGAAATAAAATGGGACGATAAGGAGGTTTGTCCATTCTATATGGTTAG
GTTTTGCCCTCACGATCTCTTTGTCAACACGAGAAGCGATCTCGGACCGT
GCCCGAGAATTCATGACCAGAAGTTGAAAGAAAGTTTTGAGAAGTCCCCG
CGACACGATGCTTATGTGCCCAAGTTTGAAGCTGAACTTGCTCAATTTTG
TGAGAAATTGGTCATGGACCTGGATAGAAGAGTTCGGCGGGGGCGAGAAC
GTCTTTCTCAAGAAGTGGAACCTGCACCACCACCTCCAATATCAGCAGAA
AAGTCTGAACAGTTATCTGTGTTGGAGGAGAAGATAAAAAACCTGCTGGA
ACAAGTGGAGACCCTGGGTGAGGCTGGCAAGGTGGATGAAGCTGAAGCCC
TCATGAGAAAGGTGGAGATTCTTAAATGTGAGAAGACAACCTTGACTCAG
CAGTCTCAGAACGATAAAGTTTTGATGATG
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