FC920537

Overview
NameFC920537
Unique NameFC920537
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10700 contig Ccv1_Contig10700:110..787. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920537 vs. ExPASy Swiss-Prot
Match: PME1_FICAW (Pectinesterase/pectinesterase inhibitor OS=Ficus awkeotsang PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.334e-33
Identity = 77/163 (47.24%), Postives = 103/163 (63.19%), Query Frame = 1
Query:  175 HQFCAKAQDQSSCIAMVSETTSINATTKMNEVDLLLIFLSKSTSNIQETIEVANHVKHRINSPRGQAALTDCVELLELSVDRITDSMAAL--KKRRTSSDEDAHAWLSGVLTNHVTCLDGLDGSAT----KLMEPRLVELMARAANSLAILVAISPYNTNVIQ 645
            H+ C ++ ++ SC+AM+SE T +N     N   LL  FL K+T  IQ+  E AN    RIN+P+ + AL DC EL++LS +R+ DS++ L  +   T S ED H WLSGVLTNHVTCLDGL+  +T     LME  L EL+ RA  SLAI V + P  +NVI+
Sbjct:   45 HKICDQSVNKESCLAMISEVTGLNMADHRN---LLKSFLEKTTPRIQKAFETANDASRRINNPQERTALLDCAELMDLSKERVVDSISILFHQNLTTRSHEDLHVWLSGVLTNHVTCLDGLEEGSTDYIKTLMESHLNELILRARTSLAIFVTLFPAKSNVIE 204          
BLAST of FC920537 vs. ExPASy Swiss-Prot
Match: PME21_SOLLC (Pectinesterase 2.1 OS=Solanum lycopersicum GN=PME2.1 PE=2 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 7.917e-27
Identity = 82/217 (37.79%), Postives = 116/217 (53.46%), Query Frame = 1
Query:   10 MATIDRPLLLKLHTPKASKRKXXXXXXXXXXXMCSATFVAIHCIKAINSNNHWSLHQ--FCAKAQDQSSCIAMVSETTSINATTKMNE-VDLLLIFLSKSTSNIQETIEVANHVKHRINSPRGQAALTDCVELLELSVDRITDSMAALKKRRTSSDEDAHAWLSGVLTNHVTCLDGLDGSATKLM--EPRLVELMARAANSLAILVAISPYNTNVIQ 645
            MAT  +PLL K H       K                FVA+  +  + +   + +     C  AQD   C++ VS+  S    T  ++ + +L  FL  S   +   I V   +K++IN  R Q ALTDC+ELL+LSVD + DS+AA+ KR  S   +A +WLSGVLTNHVTCLD LD S TK M     L EL++RA  +LA+L +++  N  V++
Sbjct:    1 MATPQQPLLTKTH-------KQNSIISFKILTFVVTLFVALFLVVFLVAPYQFEIKHSNLCKTAQDSQLCLSYVSDLISNEIVTSDSDGLSILKKFLVYSVHQMNNAIPVVRKIKNQINDIREQGALTDCLELLDLSVDLVCDSIAAIDKRSRSEHANAQSWLSGVLTNHVTCLDELD-SFTKAMINGTNLDELISRAKVALAMLASVTTPNDEVLR 209          
BLAST of FC920537 vs. ExPASy Swiss-Prot
Match: PME22_SOLLC (Pectinesterase 2.2 OS=Solanum lycopersicum GN=PME2.2 PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.008e-26
Identity = 80/217 (36.87%), Postives = 118/217 (54.38%), Query Frame = 1
Query:   10 MATIDRPLLLKLHTPKASKRKXXXXXXXXXXXMCSATFVAIHCIKAINSNNHWSLHQ--FCAKAQDQSSCIAMVSETTSIN-ATTKMNEVDLLLIFLSKSTSNIQETIEVANHVKHRINSPRGQAALTDCVELLELSVDRITDSMAALKKRRTSSDEDAHAWLSGVLTNHVTCLDGLDGSATKLM--EPRLVELMARAANSLAILVAISPYNTNVIQ 645
            MAT  +PLL K H       K                FVA+  +  + +   + +     C  AQD   C++ VS+  S    TT  + + +L+ FL      +   I V + +K++IN  R + ALTDC+ELL+ SVD ++DS+AA+ KR  S   +A +WLSGVLTNHVTCLD LD S TK M     L EL++RA  +LA+L +++  N +V++
Sbjct:    1 MATPQQPLLTKTH-------KQNSIISFKILTFVVTLFVALFLVVFLVAPYQFEIKHSNLCKTAQDSQLCLSYVSDLMSNEIVTTDSDGLSILMKFLVNYVHQMNNAIPVVSKMKNQINDIRQEGALTDCLELLDQSVDLVSDSIAAIDKRTHSEHANAQSWLSGVLTNHVTCLDELD-SFTKAMINGTNLDELISRAKVALAMLASVTTPNDDVLR 209          
BLAST of FC920537 vs. ExPASy Swiss-Prot
Match: PME3_SOLLC (Pectinesterase 3 OS=Solanum lycopersicum GN=PME3 PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.326e-25
Identity = 66/156 (42.31%), Postives = 94/156 (60.26%), Query Frame = 1
Query:  184 CAKAQDQSSCIAMVSETTSINATTKMNEVDLLLIFLSKSTSNIQETIEVANHVKHRINSPRGQAALTDCVELLELSVDRITDSMAALKKRRTSSDEDAHAWLSGVLTNHVTCLDGLDGSATKLMEPRLV-ELMARAANSLAILVAISPYNTNVIQQ 648
            C  AQD   C++ VSE      TT+ + V +L  FL K    +   I V   +K++IN  R Q ALTDC+ELL+ SVD ++DS+AA+ KR  S   +A +WLSGVLTNHVTCLD L   +       ++ EL+ RA  +LA+L +++  N  V++Q
Sbjct:   54 CKTAQDSQLCLSYVSEIV----TTESDGVTVLKKFLVKYVHQMNNAIPVVRKIKNQINDIRQQGALTDCLELLDQSVDLVSDSIAAIDKRSRSEHANAQSWLSGVLTNHVTCLDELTSFSLSTKNGTVLDELITRAKVALAMLASVTTPNDEVLRQ 205          
BLAST of FC920537 vs. ExPASy Swiss-Prot
Match: PME18_ARATH (Pectinesterase/pectinesterase inhibitor 18 OS=Arabidopsis thaliana GN=PME18 PE=1 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 7.410e-25
Identity = 71/213 (33.33%), Postives = 116/213 (54.46%), Query Frame = 1
Query:   10 MATIDRPLLLKLHTPKASKRKXXXXXXXXXXXMCSATFVAIHCIKAINSNNHWSL---HQFCAKAQDQSSCIAMVSETTSINATTKMNEVDLLLIFLSKSTSNIQETIEVANHVKHRINSPRGQAALTDCVELLELSVDRITDSMAALK--KRRTSSDEDAHAWLSGVLTNHVTCLDGLDG---SATKLMEPRLVELMARAANSLAILVAISP 624
            M+  ++PLL K   PK  K K           + S  F     I    +NN  SL    Q C  A DQ SC A++SE T+++ + K+N +DLL +FL  S   ++ T+ + +  + R N  R +A   DC E++++S DR+  SM  L+       S  + H WLS VLTN++TCL+ +     ++ ++++P+L +L++RA  +LAI V++ P
Sbjct:    1 MSNSNQPLLSK---PKYLKHKNLCLVLSFVAILGSVAFFTAQLISVNTNNNDDSLLTTSQICHGAHDQDSCQALLSEFTTLSLS-KLNRLDLLHVFLKNSVWRLESTMTMVSEARIRSNGVRDKAGFADCEEMMDVSKDRMMSSMEELRGGNYNLESYSNVHTWLSSVLTNYMTCLESISDVSVNSKQIVKPQLEDLVSRARVALAIFVSVLP 209          
BLAST of FC920537 vs. ExPASy Swiss-Prot
Match: PME1_SOLLC (Pectinesterase 1 OS=Solanum lycopersicum GN=PME1.9 PE=1 SV=5)

HSP 1 Score: 111.694 bits (278), Expect = 3.678e-24
Identity = 79/213 (37.09%), Postives = 110/213 (51.64%), Query Frame = 1
Query:   10 MATIDRPLLLKLHTPKASKRKXXXXXXXXXXXMCSATFVAIHCIKAINSNNHWSLHQFCAKAQDQSSCIAMVSETTSIN-ATTKMNEVDLLLIFLSKSTSNIQETIEVANHVKHRINSPRGQAALTDCVELLELSVDRITDSMAALKKRRTSSDEDAHAWLSGVLTNHVTCLDGLDGSATKLM--EPRLVELMARAANSLAILVAISPYNTNV 639
            MA   +PLL+K H       K                FVA+  +         S    C  AQD   C++ VS+  S    TT+ +   +L+ FL      +   I V   +K++IN  R   ALTDC+ELL+ SVD  +DS+AA+ KR  S   +A +WLSGVLTNHVTCLD LD S TK M     L EL++RA  +LA+L +++  + +V
Sbjct:    1 MANPQQPLLIKTH-------KQNPIISFKILSFVITLFVALFLVAPYQVEIKHS--NLCKTAQDSQLCLSYVSDLISNEIVTTESDGHSILMKFLVNYVHQMNNAIPVVRKMKNQINDIRQHGALTDCLELLDQSVDFASDSIAAIDKRSRSEHANAQSWLSGVLTNHVTCLDELD-SFTKAMINGTNLEELISRAKVALAMLASLTTQDEDV 203          
The following BLAST results are available for this feature:
BLAST of FC920537 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
PME1_FICAW4.334e-3347.24Pectinesterase/pectinesterase inhibitor OS=Ficus a... [more]
PME21_SOLLC7.917e-2737.79Pectinesterase 2.1 OS=Solanum lycopersicum GN=PME2... [more]
PME22_SOLLC3.008e-2636.87Pectinesterase 2.2 OS=Solanum lycopersicum GN=PME2... [more]
PME3_SOLLC3.326e-2542.31Pectinesterase 3 OS=Solanum lycopersicum GN=PME3 P... [more]
PME18_ARATH7.410e-2533.33Pectinesterase/pectinesterase inhibitor 18 OS=Arab... [more]
PME1_SOLLC3.678e-2437.09Pectinesterase 1 OS=Solanum lycopersicum GN=PME1.9... [more]
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Properties
Property NameValue
Genbank descriptionC32009F10EF RVDevelop1 Citrus clementina cDNA clone C32009F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920537 ID=FC920537; Name=FC920537; organism=Citrus clementina; type=EST; length=678bp
ACAATAATCATGGCTACAATCGACCGGCCTCTGCTACTAAAGCTACACAC
GCCAAAAGCCTCTAAACGTAAAATTCTCCTTCTAATTCTGTCCGTGGTTT
CCGTGATGTGCTCGGCTACATTTGTTGCCATACACTGTATCAAAGCTATC
AACTCAAACAATCATTGGTCACTGCATCAATTTTGTGCTAAAGCCCAGGA
CCAGTCATCGTGCATAGCCATGGTTTCAGAAACAACCTCAATTAATGCAA
CCACAAAAATGAACGAGGTTGATCTGTTACTTATCTTCTTGAGCAAGTCC
ACATCAAACATACAAGAAACTATCGAGGTGGCCAATCACGTCAAGCATCG
GATCAACAGCCCTAGAGGACAAGCGGCTTTGACTGATTGTGTGGAGTTGT
TGGAGTTATCCGTCGATAGAATTACAGATTCCATGGCGGCTCTTAAAAAA
AGGAGGACCAGTTCCGACGAAGATGCGCATGCATGGCTAAGTGGCGTTCT
TACTAACCACGTCACGTGCTTGGACGGCCTAGATGGCTCAGCTACGAAGT
TGATGGAGCCAAGGCTCGTTGAGTTGATGGCAAGAGCTGCAAATTCTCTA
GCCATTTTAGTGGCAATTTCCCCATACAACACCAACGTCATCCAGCAATA
TTACTTGAGAAAAGAAATTCAATTTCCG
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