FC920540

Overview
NameFC920540
Unique NameFC920540
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920540 vs. ExPASy Swiss-Prot
Match: A115_TOBAC (Auxin-induced protein PCNT115 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 262.307 bits (669), Expect = 1.826e-69
Identity = 133/202 (65.84%), Postives = 155/202 (76.73%), Query Frame = 2
Query:  116 MAEEKLQVPRVKLGTQGLEVSKLGLGCMNLSSGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGKAFKMLPREKVQIATKFGVV----GLRDNGVIVKGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHGVHPITAVQMEWSLWTRDIEEEIIP 709
            MA+E  +VPR+KLG+QGLEVS  GLGCM +S+ Y  P  E D I +I HA + GIT  DT+DVYG + NE LLGKA K   RE+V +ATKFG+V       +    V G P YVR+ CEASLKRLD+D IDLYYQHRVDT VPIE T+GE+KKLVEEGK+KYIGLSEAS  TIRRAH VHPITAVQ+EWSLW+RD+EEEIIP
Sbjct:    1 MAKEGTKVPRIKLGSQGLEVSAQGLGCMGMSAFYGPPKPEPDMIQLIHHAINSGITLLDTSDVYGPHTNEILLGKALKGGTRERVVLATKFGIVLGDEKKAEGKRAVHGDPAYVRAACEASLKRLDIDCIDLYYQHRVDTRVPIEITVGELKKLVEEGKLKYIGLSEASASTIRRAHAVHPITAVQLEWSLWSRDVEEEIIP 202          
BLAST of FC920540 vs. ExPASy Swiss-Prot
Match: IN22_MAIZE (IN2-2 protein OS=Zea mays GN=IN2-2 PE=2 SV=1)

HSP 1 Score: 253.062 bits (645), Expect = 1.108e-66
Identity = 128/198 (64.65%), Postives = 148/198 (74.75%), Query Frame = 2
Query:  116 MAEEKLQVPRVKLGTQGLEVSKLGLGCMNLSSGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGKAFKMLPREKVQIATKFGVVGLRDNGVIVKGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHGVHPITAVQMEWSLWTRDIEEEIIP 709
            MA   + VPR+KLG+QGLEVS  GLGCM +S+ Y  P  E + I +I HA   G+TF DT+DVYG + NE LLGKA +   REKV++ATKFGV    D    + G P YVR+ CE S KRL VD IDLYYQHR+D  VPIE TIGE+KKLVEEGKIKYIGLSEAS  TIRRAH VHPITAVQ+EWSLW+RD EE+IIP
Sbjct:    1 MAAALVSVPRIKLGSQGLEVSAQGLGCMGMSAFYGPPKPESEMIKLIHHAVDAGVTFLDTSDVYGPHTNEVLLGKALQGGVREKVELATKFGV-SFADGKREIHGDPAYVRTACEGSFKRLGVDCIDLYYQHRIDKRVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPITAVQLEWSLWSRDAEEDIIP 197          
BLAST of FC920540 vs. ExPASy Swiss-Prot
Match: YAKC_SCHPO (Aldo-keto reductase yakc [NADP+] OS=Schizosaccharomyces pombe GN=yakc PE=1 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.106e-37
Identity = 85/190 (44.74%), Postives = 120/190 (63.16%), Query Frame = 2
Query:  131 LQVPRVKLGTQGLEVSKLGLGCMNLSSGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGKAFKMLPREK-VQIATKFGVVGLRDNGVI-VKGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHGVHPITAVQMEWSLWTRDIE 694
            + +P  K+G     V  +G GCM L + Y  P SEE   +++ HA   G TF+D++D+YG  ANE  +G+ FK   R K + +ATKFG     + G + +   PDY+    + SLKRL +D IDLYY HR     PIE+ +G +KK VE GKI+YIGLSE S +TIRRA  V+P++AVQ+E+S ++ +IE
Sbjct:    1 MSIPTRKIGND--TVPAIGFGCMGLHAMYG-PSSEEANQAVLTHAADLGCTFWDSSDMYGFGANEECIGRWFKQTGRRKEIFLATKFGYEKNPETGELSLNNEPDYIEKALDLSLKRLGIDCIDLYYVHRFSGETPIEKIMGALKKCVEAGKIRYIGLSECSANTIRRAAAVYPVSAVQVEYSPFSLEIE 187          
BLAST of FC920540 vs. ExPASy Swiss-Prot
Match: IOLS_BACSU (Protein iolS OS=Bacillus subtilis GN=iolS PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.206e-24
Identity = 62/190 (32.63%), Postives = 104/190 (54.74%), Query Frame = 2
Query:  143 RVKLGTQGLEVSKLGLGCMNLSSGYSSP-VSEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGKAFKMLPREKVQIATKFGVVGLRDNGVIVKGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHGVHPITAVQMEWSLWTRDIEEEIIP 709
            + KLG   L+V  +GLG   +      P ++EE G  +++ A   G+T  DTA +YG   +E L+G+  +   RE V IATK      + N  +   +PD+++   + SLKRL+ DYIDL+Y H  D   P +E +  + ++ + GKI+ IG+S  S + ++ A+    +  +Q E++L  R+ E+   P
Sbjct:    3 KAKLGKSDLQVFPIGLGTNAVGGHNLYPNLNEETGKELVREAIRNGVTMLDTAYIYGIGRSEELIGEVLREFNREDVVIATK-AAHRKQGNDFVFDNSPDFLKKSVDESLKRLNTDYIDLFYIHFPDEHTPKDEAVNALNEMKKAGKIRSIGVSNFSLEQLKEANKDGLVDVLQGEYNLLNREAEKTFFP 191          
BLAST of FC920540 vs. ExPASy Swiss-Prot
Match: GS69_BACSU (General stress protein 69 OS=Bacillus subtilis GN=yhdN PE=1 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 8.880e-24
Identity = 67/183 (36.61%), Postives = 100/183 (54.64%), Query Frame = 2
Query:  164 GLEVSKLGLGCMNLSSGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGKAFKML-PREKVQIATKFGVVGLRDNGVIVKGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHGVHPITAVQMEWSLWTRDIEEEIIP 709
            G+E S++GLG   +         E+  I  I+ A  +GIT  DTA  YG   +E ++GKA K    R++V +ATK  +   ++N +        +    E SLKRL  DYIDLY  H  D  VPIEET   MK+L + GKI+ IG+S  S + +     V P+  +Q  ++L+ R++EE ++P
Sbjct:   10 GIEASRIGLGTWAIGGTMWGGTDEKTSIETIRAALDQGITLIDTAPAYGFGQSEEIVGKAIKEYGKRDQVILATKTAL-DWKNNQLFRHANRARIVEEVENSLKRLQTDYIDLYQVHWPDPLVPIEETAEVMKELYDAGKIRAIGVSNFSIEQMDTFRAVAPLHTIQPPYNLFEREMEESVLP 191          
BLAST of FC920540 vs. ExPASy Swiss-Prot
Match: YCCK_BACSU (Uncharacterized oxidoreductase yccK OS=Bacillus subtilis GN=yccK PE=3 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 2.187e-22
Identity = 66/188 (35.11%), Postives = 102/188 (54.26%), Query Frame = 2
Query:  152 LGTQGLEVSKLGLGCMNLSSGYSSP-VSEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGKAFKMLP-REKVQIATKFGVVGLRDNGVIVKGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHGVHPITAVQMEWSLWTRDIEEEIIP 709
            LG   L+V ++G G   +      P +++E G  +++ A   G+ F DTA +YG   +E L+G+  +    R ++ IATK G     D  + +  + +++RS  E SLKRL  DYIDLYY H  D   P+ E  G +K+L +EGKIK IG S      ++  +    +   Q E+SL  RD E+E++P
Sbjct:    7 LGKTKLKVKRIGFGANAVGGHNLFPNLNDETGKDLVRTALDGGVNFIDTAFIYGLGRSEELIGEVVQERGVRNELIIATK-GAHKEVDGSIELDNSREFLRSEVEKSLKRLKTDYIDLYYVHFPDGKTPLAEVAGTLKELKDEGKIKAIGASNLDYQQLQDFNADGYLEVFQAEYSLIQRDAEKELLP 193          
BLAST of FC920540 vs. ExPASy Swiss-Prot
Match: YDJG_ECOLI (Uncharacterized oxidoreductase ydjG OS=Escherichia coli (strain K12) GN=ydjG PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.731e-22
Identity = 66/204 (32.35%), Postives = 104/204 (50.98%), Query Frame = 2
Query:  143 RVKLGTQGLEVSKLGLGCMNLSSG--YSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGKAFKMLPREKVQIATKFGVVGLRDNGVIVKG---------TPDYVRSCCEASLKRLDVDYIDLYYQHRVDTS---VPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHGVHPITAVQMEWSLWTRDIEEEIIPL 712
            ++ LGT  + +S++GLG   +  G  ++  +  +  I  I  A   GI   DTA  Y    +E ++G+A K LPRE+V + TK G+V  R   +  K          +P+ +R    ASL+RL +DYID+Y  H         PI ET+  + +L  EGKI+ IG +    D IR       +  +Q ++S+  R +E E++PL
Sbjct:    3 KIPLGTTDITLSRMGLGTWAIGGGPAWNGDLDRQICIDTILEAHRCGINLIDTAPGYNFGNSEVIVGQALKKLPREQVVVETKCGIVWERKGSLFNKVGDRQLYKNLSPESIREEVAASLQRLGIDYIDIYMTHWQSVPPFFTPIAETVAVLNELKSEGKIRAIGAANVDADHIREYLQYGELDIIQAKYSILDRAMENELLPL 206          
BLAST of FC920540 vs. ExPASy Swiss-Prot
Match: PLR1_SCHPO (Pyridoxal reductase OS=Schizosaccharomyces pombe GN=plr1 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.312e-22
Identity = 66/183 (36.07%), Postives = 102/183 (55.74%), Query Frame = 2
Query:  164 GLEVSKLGLGCMNLSSGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQN---ANETLLGKAFKMLPRE--KVQIATKFGVVGLRDNGVIVKGTPDYVRSCCEASLKRL-DVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHGVHPITAVQMEWSLWTRDIE 694
            G +V  +G G M L+        +E+   ++ +A S+G  ++D  + YG +   +N  LL + F+  P    KV ++ K G   L    ++  G PD+V    E  +  L     +DL+   RVD +VPIE T+  +K  V+ GKI  +GLSE S +TI+RAH V PI AV++E+SL++RDIE
Sbjct:    6 GFKVGPIGFGLMGLT-WKPKQTPDEEAFEVMNYALSQGSNYWDAGEFYGVDPPTSNLDLLARYFEKYPENANKVFLSVKGG---LDFKTLVPDGNPDFVSKSVENVIAHLRGTKKLDLFQCARVDPNVPIETTMKTLKGFVDSGKISCVGLSEVSAETIKRAHAVVPIAAVEVEYSLFSRDIE 184          
BLAST of FC920540 vs. ExPASy Swiss-Prot
Match: YH5B_SCHPO (Uncharacterized oxidoreductase C215.11c OS=Schizosaccharomyces pombe GN=SPBC215.11c PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.418e-21
Identity = 67/200 (33.50%), Postives = 107/200 (53.50%), Query Frame = 2
Query:  104 TASKMAEEKLQVPRVKLGTQGLEVSKLGLGCMNLSSG--YSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGKAFKMLPREKVQIATKFGVVGLRDNGVIVKGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHGVHPITAVQMEWSLWTRDIEE 697
            TA+  A +  Q   VK+G   + V+++G G M ++    +  P  +E  I+ +K      I F DTAD YG   +E LL +A  + P + + IATK G+V    N     G P ++R     S++RL V  IDL+  HR+D  VP ++   E+  + +EG I+++GLSE + D I+ A    P+ +VQ  ++L  R  E+
Sbjct:    4 TAASSAVDASQAGTVKVGD--MVVNRMGFGAMRVTGDGIWDEPKDKEACIATLKRLPELNINFIDTADSYGPEVSENLLREA--LYPYKGLIIATKGGLVRTGPNEWHPCGAPKFLRQEVLMSMRRLGVKQIDLWQLHRIDPKVPRKDQFSEIAAMKKEGLIRHVGLSEVTVDDIKEAEQYFPVVSVQNLFNLVNRKNEK 199          
BLAST of FC920540 vs. ExPASy Swiss-Prot
Match: YAJO_ECOLI (Uncharacterized oxidoreductase yajO OS=Escherichia coli (strain K12) GN=yajO PE=3 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 9.190e-21
Identity = 70/199 (35.18%), Postives = 106/199 (53.27%), Query Frame = 2
Query:  152 LGTQGLEVSKLGLGCMNLSS----GYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGKAFK-MLPREKVQIATK-FGVVGLRDNGVIVKGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSE------ASPDTIRRAHGVHPITAVQMEWSLWTRDIEEEIIPL 712
            LG   L VS+L LGCM         ++  + EE    +IK A   GI FFDTA+ Y   ++E ++G+A +    RE V +ATK F  VG    G+        +RS  + SL+RL +DY+D+   HR D + PIEET+  +  +V+ GK +YIG S       A    +++ HG     ++Q  ++L  R+ E E++PL
Sbjct:    6 LGKTDLRVSRLCLGCMTFGEPDRGNHAWTLPEESSRPIIKRALEGGINFFDTANSYSDGSSEEIVGRALRDFARREDVVVATKVFHRVGDLPEGL---SRAQILRSI-DDSLRRLGMDYVDILQIHRWDYNTPIEETLEALNDVVKAGKARYIGASSMHASQFAQALELQKQHGWAQFVSMQDHYNLIYREEEREMLPL 200          
The following BLAST results are available for this feature:
BLAST of FC920540 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
A115_TOBAC1.826e-6965.84Auxin-induced protein PCNT115 OS=Nicotiana tabacum... [more]
IN22_MAIZE1.108e-6664.65IN2-2 protein OS=Zea mays GN=IN2-2 PE=2 SV=1[more]
YAKC_SCHPO4.106e-3744.74Aldo-keto reductase yakc [NADP+] OS=Schizosaccharo... [more]
IOLS_BACSU5.206e-2432.63Protein iolS OS=Bacillus subtilis GN=iolS PE=1 SV=... [more]
GS69_BACSU8.880e-2436.61General stress protein 69 OS=Bacillus subtilis GN=... [more]
YCCK_BACSU2.187e-2235.11Uncharacterized oxidoreductase yccK OS=Bacillus su... [more]
YDJG_ECOLI3.731e-2232.35Uncharacterized oxidoreductase ydjG OS=Escherichia... [more]
PLR1_SCHPO8.312e-2236.07Pyridoxal reductase OS=Schizosaccharomyces pombe G... [more]
YH5B_SCHPO2.418e-2133.50Uncharacterized oxidoreductase C215.11c OS=Schizos... [more]
YAJO_ECOLI9.190e-2135.18Uncharacterized oxidoreductase yajO OS=Escherichia... [more]

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Properties
Property NameValue
Genbank descriptionC32009G01EF RVDevelop1 Citrus clementina cDNA clone C32009G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920540 ID=FC920540; Name=FC920540; organism=Citrus clementina; type=EST; length=712bp
GNAACCAGAATCCTGTCTCATTCTGCTCATTGCTGGAGTTGGAGTCAACT
GTCTCCCTACTTATTGAAACTTGAAAGACACCCAAAACAAAGAAACCAAA
ACTACAGCTTCAAAAATGGCAGAAGAGAAACTCCAAGTTCCAAGGGTGAA
ACTTGGTACCCAAGGCCTCGAGGTTTCAAAGTTGGGGCTGGGATGCATGA
ACCTGAGTTCTGGTTATAGCTCTCCAGTCTCAGAAGAGGATGGCATCTCC
ATGATAAAACATGCTTTCAGTAAAGGAATCACTTTCTTTGATACTGCTGA
TGTGTACGGACAAAATGCTAATGAAACTCTTCTGGGAAAGGCCTTCAAGA
TGTTGCCCAGAGAAAAGGTACAAATAGCCACAAAGTTTGGGGTTGTAGGA
CTAAGAGATAATGGCGTGATCGTGAAGGGCACCCCTGATTACGTGCGCTC
GTGTTGTGAAGCTAGCTTGAAGCGACTTGATGTGGATTACATTGATTTGT
ATTATCAACATAGAGTGGACACATCAGTCCCTATCGAAGAAACCATTGGC
GAAATGAAGAAGCTGGTGGAGGAGGGTAAAATCAAGTACATTGGTTTGTC
TGAGGCTAGCCCAGACACAATTAGGAGAGCACATGGTGTTCATCCCATCA
CAGCTGTACAAATGGAATGGTCCCTCTGGACTCGTGATATCGAGGAAGAG
ATAATACCCCTC
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