FC920546

Overview
NameFC920546
Unique NameFC920546
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length705
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14157 contig Ccv1_Contig14157:1..706. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920546 vs. ExPASy Swiss-Prot
Match: Y1515_ARATH (Uncharacterized TPR repeat-containing protein At1g05150 OS=Arabidopsis thaliana GN=At1g05150 PE=1 SV=1)

HSP 1 Score: 307.76 bits (787), Expect = 1.456e-88
Identity = 143/199 (71.86%), Postives = 175/199 (87.94%), Query Frame = 2
Query:   95 CDAELLKKEMSETDVPLSYSGGGGPQKSIRKPNLEEILRKFLHFLKPETFQGAVKAINERILSVLDETGSARVDLGMFYAILAPICSGSPEKRKRVAFDALLWHPVNEGSTQVRKVDAVRYIKLLRAVYIPSHGVSEMMEVHG--EADSSM-VSLSEFLVMFDDPDWGFGIMSTLMKLEAGDRNRHGRHVCSVCRYPLL 682
            CD E ++KEM + DVP+SYSG GGP KSIRKPNLEEILR+ L  LKP+TFQGA+KAINE+IL++LD++GS RVD+GMFYA++AP+C G  +KRKRVAFDALLW PVNEGS+Q+ K DAV+YIKLLRA+YIPSHG+SEM+EVHG  EA+SS+ V+ ++FL MFDDPDWGFGIMST++KLEA DRNRHG  VCSVCRYP++
Sbjct:  548 CDVEAVRKEMRDNDVPVSYSGSGGPTKSIRKPNLEEILRRLLSSLKPDTFQGAIKAINEKILALLDDSGSGRVDMGMFYAVIAPLCGGHSDKRKRVAFDALLWRPVNEGSSQITKTDAVKYIKLLRAIYIPSHGMSEMLEVHGEEEAESSVTVTFNQFLAMFDDPDWGFGIMSTILKLEANDRNRHGNQVCSVCRYPVI 746          

HSP 2 Score: 40.4318 bits (93), Expect = 1.456e-88
Identity = 18/26 (69.23%), Postives = 23/26 (88.46%), Query Frame = 1
Query:    4 QTVGEMTTVRQDLANALEIRAFQKIT 81
            +TVGE TT+R DLA AL+IRAFQ++T
Sbjct:  518 KTVGEKTTLRPDLATALQIRAFQRVT 543          
BLAST of FC920546 vs. ExPASy Swiss-Prot
Match: Y2245_ARATH (Uncharacterized TPR repeat-containing protein At2g32450 OS=Arabidopsis thaliana GN=At2g32450 PE=1 SV=1)

HSP 1 Score: 298.516 bits (763), Expect = 2.485e-85
Identity = 138/197 (70.05%), Postives = 172/197 (87.31%), Query Frame = 2
Query:   95 CDAELLKKEMSETDVPLSYSGGGGPQKSIRKPNLEEILRKFLHFLKPETFQGAVKAINERILSVLDETGSARVDLGMFYAILAPICSGSPEKRKRVAFDALLWHPVNEGSTQVRKVDAVRYIKLLRAVYIPSHGVSEMMEVHGEA-DSSMVSLSEFLVMFDDPDWGFGIMSTLMKLEAGDRNRHGRHVCSVCRYPLL 682
            CD E L++EM + +VP+SYSG G P KSIR+PNLEEILR+ L+ LKPETFQGA+KAINE+ILSVLD++GS RVDLGMFYA++AP+C G P+KRKRVAFDALLW PVNEGS+Q+ K++AV+YIKLLRA+YIPS G+SEM+EVHGE+ D+S V+ ++FL M+DD +WGFGIMST+ KLE  DRNRHG  VCSVCRYP++
Sbjct:  543 CDVEALRREMRDNNVPVSYSGNGIPTKSIRRPNLEEILRRLLNVLKPETFQGAIKAINEKILSVLDDSGSGRVDLGMFYAVIAPLCGGHPDKRKRVAFDALLWKPVNEGSSQITKMEAVKYIKLLRAIYIPSQGMSEMLEVHGESDDTSTVTFNQFLEMYDDSEWGFGIMSTVFKLETRDRNRHGNQVCSVCRYPII 739          

HSP 2 Score: 38.891 bits (89), Expect = 2.485e-85
Identity = 17/26 (65.38%), Postives = 23/26 (88.46%), Query Frame = 1
Query:    4 QTVGEMTTVRQDLANALEIRAFQKIT 81
            +TVGE TT+R DLA AL++RAFQ++T
Sbjct:  513 KTVGEKTTLRPDLAIALQVRAFQRVT 538          
The following BLAST results are available for this feature:
BLAST of FC920546 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
Y1515_ARATH1.456e-8871.86Uncharacterized TPR repeat-containing protein At1g... [more]
Y2245_ARATH2.485e-8570.05Uncharacterized TPR repeat-containing protein At2g... [more]
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Properties
Property NameValue
Genbank descriptionC32009G08EF RVDevelop1 Citrus clementina cDNA clone C32009G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920546 ID=FC920546; Name=FC920546; organism=Citrus clementina; type=EST; length=705bp
ATTCAGACTGTTGGTGAGATGACTACTGTTAGGCAGGATTTAGCGAATGC
TCTGGAGATTAGGGCTTTCCAGAAAATTACTAGNGTTGAGTCGATGTGAT
GCGGAGCTTCTAAAGAAAGAAATGAGTGAAACTGATGTACCACTGTCTTA
TTCTGGAGGTGGTGGTCCTCAGAAATCCATACGTAAGCCTAATTTGGAGG
AAATTCTCCGCAAGTTCCTTCATTTCCTAAAGCCTGAAACTTTTCAAGGG
GCTGTCAAAGCAATAAATGAGAGGATCCTCTCTGTCTTGGATGAAACTGG
CTCAGCCAGGGTGGACTTGGGCATGTTTTATGCTATTCTCGCACCCATTT
GCAGTGGTTCTCCAGAAAAGCGGAAACGAGTTGCCTTTGATGCACTTCTG
TGGCATCCTGTTAATGAAGGGAGCACTCAGGTTAGAAAGGTTGATGCTGT
TAGATACATCAAATTATTGAGGGCTGTTTATATTCCTTCTCACGGGGTTA
GTGAAATGATGGAGGTCCATGGAGAAGCAGACTCTTCAATGGTATCCCTC
AGCGAGTTTCTTGTCATGTTTGATGATCCTGATTGGGGATTTGGCATCAT
GTCGACTCTGATGAAGCTTGAAGCTGGGGATAGGAATCGCCATGGACGTC
ATGTTTGCTCAGTTTGTCGCTACCCATTATTGGCTCTCGCTTCAGGNAGA
TGAAA
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