FC920559

Overview
NameFC920559
Unique NameFC920559
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14160 contig Ccv1_Contig14160:1..707. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920559 vs. ExPASy Swiss-Prot
Match: GCP2_HUMAN (Gamma-tubulin complex component 2 OS=Homo sapiens GN=TUBGCP2 PE=1 SV=2)

HSP 1 Score: 184.882 bits (468), Expect = 3.690e-46
Identity = 89/230 (38.70%), Postives = 147/230 (63.91%), Query Frame = 1
Query:    1 IAREELMPQLDEITVEKLQSLLDIALRSTAAAADPCHEDLTCSVERSSLLKRMATLKFVEIKTSSDGVDLEQP-VSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNA-SGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVERLKSLCLQYAAATQ 684
            +A EEL   +++IT  +L++LL++ALR + A  DP  +DL   +    L+ ++  +  +E K        +   ++++GLE FS  Y V+WPLS++I+RKALT+YQM+FR +F+CKHVERQLC  W  ++ A+  +  S    + +  L + ML F+ ++ +Y+ FEV+EP WH++   L++A +ID+V+ HH  FLD CL++C+L  P+LLK   +L S+C+ +    Q
Sbjct:  534 LAEEELRKPVEDITPPRLEALLELALRMSTANTDPFKDDLKIDLMPHDLITQLLRVLAIETKQEKAMAHADPTELALSGLEAFSFDYIVKWPLSLIINRKALTRYQMLFRHMFYCKHVERQLCSVWISNKTAKQHSLHSAQWFAGAFTLRQRMLNFVQNIQYYMMFEVMEPTWHILEKNLKSASNIDDVLGHHTGFLDTCLKDCMLTNPELLKVFSKLMSVCVMFTNCMQ 763          
BLAST of FC920559 vs. ExPASy Swiss-Prot
Match: GCP2_MOUSE (Gamma-tubulin complex component 2 OS=Mus musculus GN=Tubgcp2 PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.402e-45
Identity = 90/234 (38.46%), Postives = 148/234 (63.25%), Query Frame = 1
Query:    1 IAREELMPQLDEITVEKLQSLLDIALRSTAAAADPCHEDLTCSVERSSLLKRMATLKFVEIK-----TSSDGVDLEQPVSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNA-SGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVERLKSLCLQYAAATQ 684
            +  EEL   +++I + +L++LL++ALR + A  DP  +DL   +    L+ ++  +  +E K     T +D  +L    +++GLE FS  Y V+WPLS++I+RKALT+YQM+FR +F+CKHVERQLC  W  ++ A+     S    + +  L + ML F+ ++ +Y+ FEV+EP WH++   L++A +ID+V+ HH  FLD CL++C+L  P+LLK   +L S+C+ +    Q
Sbjct:  534 LTEEELRKPVEDIILTRLEALLELALRMSTANTDPFKDDLKIELMPHDLITQLLRVLAIETKQEKAMTHADPTEL----TLSGLEAFSFDYMVKWPLSLIINRKALTRYQMLFRHMFYCKHVERQLCSVWISNKTAKQHALHSAKWFAGAFTLRQRMLNFVQNIQYYMMFEVMEPTWHILEKNLKSASNIDDVLGHHISFLDNCLKDCMLTNPELLKVFSKLMSVCVMFTNCMQ 763          
BLAST of FC920559 vs. ExPASy Swiss-Prot
Match: GCP2_PONAB (Gamma-tubulin complex component 2 OS=Pongo abelii GN=TUBGCP2 PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.832e-45
Identity = 88/230 (38.26%), Postives = 147/230 (63.91%), Query Frame = 1
Query:    1 IAREELMPQLDEITVEKLQSLLDIALRSTAAAADPCHEDLTCSVERSSLLKRMATLKFVEIKTSSDGVDLEQP-VSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFN-ASGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVERLKSLCLQYAAATQ 684
            +A EEL   +++IT  +L++LL++ALR + A  DP  +DL   +    L+ ++  +  +E K        +   ++++GLE FS  Y V+WPLS++I+RKALT+YQM+FR +F+CKHVERQLC  W  ++ A+  +  S    + +  L + ML F+ ++ +Y+ FEV+EP WH++   L++A +ID+V+ +H  FLD CL++C+L  P+LLK   +L S+C+ +    Q
Sbjct:  534 LAEEELRKPVEDITPPRLEALLELALRMSTANTDPFKDDLKIDLMPHDLITQLLRVLAIETKQEKAMAHADPTELTLSGLEAFSFDYIVKWPLSLIINRKALTRYQMLFRHMFYCKHVERQLCSVWISNKTAKQHSLPSAQWFAGAFTLRQRMLNFVQNIQYYMMFEVMEPTWHILEKNLKSASNIDDVLGYHTGFLDTCLKDCMLTNPELLKVFSKLMSVCVMFTNCMQ 763          
BLAST of FC920559 vs. ExPASy Swiss-Prot
Match: GCP2_DROME (Gamma-tubulin complex component 2 homolog OS=Drosophila melanogaster GN=Grip84 PE=1 SV=2)

HSP 1 Score: 158.303 bits (399), Expect = 3.699e-38
Identity = 77/227 (33.92%), Postives = 136/227 (59.91%), Query Frame = 1
Query:   10 EELMPQLDEITVEKLQSLLDIALRSTAAAADPCHEDLTCSVERSSLLKRMATLKFVEIKTSSDGVDLEQPVSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNASGTAISRSSLLCRS-MLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLL-HLPDLLKKVERLKSLCLQYAAATQ 684
            +EL   +D +    L++LL + LR ++A  DP  +DL C +    L+ +M+     +I    +    +  + ++GLE F+ +Y+V+WP S+V++  +++KYQM+FR LF+CKHVERQLC  W+ +  AR F     ++ R++   R  M+  I +L +Y+  E++EPNWH+   +++T +++D V++ H  FLD CL+ C+L     L + + +L  +CL+Y    Q
Sbjct:  526 DELTKNVDHVLPMTLENLLGLTLRISSARNDPYKDDLHCELLPYDLVTQMS-----KIMKKEENWQAQPRLDLSGLECFAFTYEVKWPCSLVLNHISISKYQMLFRQLFYCKHVERQLCKIWKENSIARQFEPQAASLYRAAFTLRQRMMNAIQNLEYYMMIEIIEPNWHIFIEKMKTVENVDNVLRLHQDFLDSCLKNCMLTESSHLNRSIFKLCKICLKYCEFIQ 747          
BLAST of FC920559 vs. ExPASy Swiss-Prot
Match: SPC97_DICDI (Spindle pole body component 97 OS=Dictyostelium discoideum GN=spc97 PE=2 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 4.999e-35
Identity = 90/266 (33.83%), Postives = 142/266 (53.38%), Query Frame = 1
Query:   10 EELMPQLDEITVEKLQSLLDIALR-STAAAADPCHEDLTCSVERSSLLKRMATLKFVE---------------------IKTSSDGVDLEQPVSIT-----------------GLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARA-FNASG--TAISRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVERLKSLCLQYAAAT 681
            +EL   LD+I + K+ SLL ++LR S+ +  D   +DL C      L+ ++  +  +                        TSS+   +   V+ T                 G+E+ + +Y V WPLS++ISRK+L KYQ++FR LF CKHVE+ L   W  HQ  R+ +N  G  T +S + LL   M+ F+ +L +Y+  EVLEPNW+ M N ++T+K++D+VI+ H+ FL+ CL EC+L    L+  + +  SLC+ +A  T
Sbjct:  803 DELKKPLDQINMVKMNSLLQLSLRTSSISEEDEFKDDLECEFIPYKLVDQLLNIININNFNNPTTTTTTNTSSNNITATTNTSSNNTTINTTVNTTLIQSTSAHEVLKTNKLFGIESLAFNYNVGWPLSLIISRKSLIKYQIIFRHLFLCKHVEKVLVDTWSQHQFRRSSYNKPGLSTLLSFTHLLRHRMIHFLQNLEYYMMLEVLEPNWNKMKNSIKTSKTVDDVIRIHNDFLETCLTECMLTDTKLVNILMKFMSLCITFANFT 1068          
BLAST of FC920559 vs. ExPASy Swiss-Prot
Match: ALP4_SCHPO (Spindle pole body component alp4 OS=Schizosaccharomyces pombe GN=alp4 PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 9.757e-31
Identity = 91/269 (33.83%), Postives = 136/269 (50.56%), Query Frame = 1
Query:    4 AREELMPQLDEITVEKLQSLLDIALRS--TAAAADPCHEDLTCSVERSSL---LKRMATLKFVEIKTSSDGVDL--------------------------------EQPVSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAF--NASGTAIS---RSSLLCRS-MLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVERLKSLCLQYAAAT 681
            A+ EL      I++ KLQS LD+ALR   T  A DP  E +T  V ++SL   L  + ++  +E  TSS G ++                                     I G ET  L YKV +PLS+++SRKA+ +YQ++FR     +HVE QL  +W  H    A+  N+S   I    R+S L R+ ML F+  +++Y T EV+E +W      L+ A+++D ++Q H  FLD CL+EC+L    LLK   +L + C  +A+ T
Sbjct:  449 AQHELRKPAKYISITKLQSQLDLALRQPGTITATDPHKEYVTVEVNQTSLIDWLMHIVSISGLEEGTSSQGNEVWNESITKQADVGNETRNFESEHNRSTQGTSKVGSDKDINGFETMQLCYKVPFPLSLILSRKAIIRYQLLFRYFLLLRHVEMQLENSWVQHSKNSAWRLNSSNAKIEQWKRNSWLLRTRMLSFVQKIIYYTTSEVIETHWGKFMGELENARTVDNLMQEHIDFLDTCLKECMLTNSRLLKVQSKLLNTCAMFASYT 717          
BLAST of FC920559 vs. ExPASy Swiss-Prot
Match: GCP3_XENLA (Gamma-tubulin complex component 3 homolog OS=Xenopus laevis GN=tubgcp3 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.019e-17
Identity = 56/208 (26.92%), Postives = 97/208 (46.63%), Query Frame = 1
Query:    1 IAREELMPQLDEITVEKLQSLLDIALRSTAAAADPCHEDLTCSVERSSLLKRMATLKFVEIKTSSDGVDLEQPVSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQG----ARAFNASGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLL 612
            + + EL+     +    L  +L+ A+R+T A  D              +LKR+  ++ +E+               TG + FSL Y V  P++ V +R+ ++ Y  VF  L+  K +E  L   W+ H       +        + +  +L   M+ FI+ + +Y+TFEVLE +W  + N++  A+ +D +I  HD FLD  +  CLL
Sbjct:  579 LLKPELVRPATTLYQHNLTGILETAVRATNAQFD-----------NPEILKRL-DVRLLEVSPGD-----------TGWDVFSLDYHVDGPIATVFTRECMSHYLRVFNFLWRAKRMEYILTDIWKGHMCNAKLLKGMPELSGVLHQCHILASEMVHFIHQMQYYITFEVLECSWDELWNKVLKAQDLDHIIAAHDVFLDTIISRCLL 763          
BLAST of FC920559 vs. ExPASy Swiss-Prot
Match: GCP3_HUMAN (Gamma-tubulin complex component 3 OS=Homo sapiens GN=TUBGCP3 PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.580e-15
Identity = 55/208 (26.44%), Postives = 95/208 (45.67%), Query Frame = 1
Query:    1 IAREELMPQLDEITVEKLQSLLDIALRSTAAAADPCHEDLTCSVERSSLLKRMATLKFVEIKTSSDGVDLEQPVSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQG----ARAFNASGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLL 612
            + + EL+     +    L  +L+ A+R+T A  D            S  + R   ++ +E+               TG + FSL Y V  P++ V +R+ ++ Y  VF  L+  K +E  L    + H       R        + +  +L   M+ FI+ + +Y+TFEVLE +W  + N++Q A+ +D +I  H+ FLD  +  CLL
Sbjct:  580 LLKPELVRPATTLYQHNLTGILETAVRATNAQFD------------SPEILRRLDVRLLEVSPGD-----------TGWDVFSLDYHVDGPIATVFTRECMSHYLRVFNFLWRAKRMEYILTDIRKGHMCNAKLLRNMPEFSGVLHQCHILASEMVHFIHQMQYYITFEVLECSWDELWNKVQQAQDLDHIIAAHEVFLDTIISRCLL 764          
BLAST of FC920559 vs. ExPASy Swiss-Prot
Match: GCP3_MOUSE (Gamma-tubulin complex component 3 OS=Mus musculus GN=Tubgcp3 PE=2 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 7.505e-15
Identity = 56/208 (26.92%), Postives = 96/208 (46.15%), Query Frame = 1
Query:    1 IAREELMPQLDEITVEKLQSLLDIALRSTAAAADPCHEDLTCSVERSSLLKRMATLKFVEIKTSSDGVDLEQPVSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQG----ARAFNASGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLL 612
            + + EL+     +    L  +L+ A+R+T A  D              +LKR+  ++ +E+               TG + FSL Y V  P++ V +R+ ++ Y  VF  L+  K +E  L    + H       R        + +  +L   M+ FI+ + +Y+TFEVLE +W  + NR+Q A+ +D +I  H+ FL+     CLL
Sbjct:  578 LLKPELVRPATTLYQHNLTGILETAVRATNAQFDS-----------PEILKRL-DVRLLEVSPGD-----------TGWDVFSLDYHVDGPIATVFTRECMSHYLRVFNFLWRAKRMEYILTDIRKGHMCNAKLLRNMPEFSGVLHQCHILASEMVHFIHQMQYYITFEVLECSWDELWNRVQQAQDLDHIIAAHEAFLNTITSRCLL 762          
BLAST of FC920559 vs. ExPASy Swiss-Prot
Match: SPC98_DICDI (Spindle pole body component 98 OS=Dictyostelium discoideum GN=spc98 PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 6.354e-14
Identity = 58/237 (24.47%), Postives = 112/237 (47.26%), Query Frame = 1
Query:   10 EELMPQLDEITVEKLQSLLDIALRSTAAAADPCHEDLTCSVERSSLLKRMATLKFVEIKTSSDGVDLEQPVSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARA---FNASGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRL-QTAKSIDEVIQ-HHDFFLDKCLRECLLHLPDLLKKVERLKSLCLQYAAATQWLISSSI 705
            E+L+    +I   KL   +D A+R++ A  +   +D+   ++ + L +R   +                     G + FSL Y V  PL+ ++S   + +Y+ +F  ++  K VE  L   W+  + + +    +  G  I +S L+   M+ FI++  +YL FEVLE +W  +   + Q A  +D++I+ HH +  D C +  L +     +  ++L S+ +++      LI+ SI
Sbjct:  525 EDLLKPTSQIQRHKLVGWMDTAIRNSNAQFE--EQDIVNRLDIALLPERPGNI---------------------GWDIFSLDYHVDTPLNTILSPNDILRYKKIFHFMWGIKRVEYSLASIWRKIRSSTSLSILSPIGGDIHKSHLIMNEMVHFISNFQYYLMFEVLECSWKNLEKFIDQEATDLDQLIEAHHQYLQDICNKMFLSNSDSCYECFKKLLSIIIKFTLLQTKLINLSI 738          
The following BLAST results are available for this feature:
BLAST of FC920559 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
GCP2_HUMAN3.690e-4638.70Gamma-tubulin complex component 2 OS=Homo sapiens ... [more]
GCP2_MOUSE1.402e-4538.46Gamma-tubulin complex component 2 OS=Mus musculus ... [more]
GCP2_PONAB1.832e-4538.26Gamma-tubulin complex component 2 OS=Pongo abelii ... [more]
GCP2_DROME3.699e-3833.92Gamma-tubulin complex component 2 homolog OS=Droso... [more]
SPC97_DICDI4.999e-3533.83Spindle pole body component 97 OS=Dictyostelium di... [more]
ALP4_SCHPO9.757e-3133.83Spindle pole body component alp4 OS=Schizosaccharo... [more]
GCP3_XENLA8.019e-1726.92Gamma-tubulin complex component 3 homolog OS=Xenop... [more]
GCP3_HUMAN2.580e-1526.44Gamma-tubulin complex component 3 OS=Homo sapiens ... [more]
GCP3_MOUSE7.505e-1526.92Gamma-tubulin complex component 3 OS=Mus musculus ... [more]
SPC98_DICDI6.354e-1424.47Spindle pole body component 98 OS=Dictyostelium di... [more]

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Properties
Property NameValue
Genbank descriptionC32009H11EF RVDevelop1 Citrus clementina cDNA clone C32009H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920559 ID=FC920559; Name=FC920559; organism=Citrus clementina; type=EST; length=707bp
ATAGCTCGTGAGGAACTCATGCCACAGCTTGATGAGATTACTGTGGAAAA
ACTGCAGTCTCTGCTAGACATTGCTCTGCGTTCCACTGCTGCAGCAGCAG
ATCCTTGTCATGAGGACCTAACATGTTCTGTCGAGAGATCATCCTTGCTT
AAAAGAATGGCCACACTCAAATTTGTTGAAATTAAGACTTCCTCTGATGG
CGTGGATTTAGAGCAGCCAGTGAGCATTACTGGTCTTGAGACGTTTTCTT
TAAGCTACAAGGTCCAGTGGCCATTATCTATTGTTATATCAAGAAAAGCC
CTAACAAAGTATCAGATGGTTTTTCGCTTACTTTTTCACTGTAAACATGT
AGAGCGCCAGCTGTGTGGGGCTTGGCAAGTGCACCAAGGAGCTCGTGCCT
TTAACGCAAGTGGAACTGCTATCTCTAGATCATCTCTGCTCTGCCGCAGC
ATGCTTAAGTTTATTAATAGCCTTCTTCATTATTTGACATTTGAGGTTCT
TGAACCCAATTGGCATGTGATGCATAATAGACTTCAAACTGCAAAGAGCA
TAGATGAGGTCATACAACATCATGATTTTTTCCTTGACAAGTGTCTCAGA
GAATGCTTGCTTCATTTGCCTGATCTTCTCAAGAAGGTGGAGAGGCTGAA
ATCATTGTGCCTGCAGTATGCGGCCGCAACTCAGTGGTTGATATCATCTT
CTATTGA
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