FC920560

Overview
NameFC920560
Unique NameFC920560
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length654
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920560 vs. ExPASy Swiss-Prot
Match: ERF3B_MOUSE (Eukaryotic peptide chain release factor GTP-binding subunit ERF3B OS=Mus musculus GN=Gspt2 PE=1 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 2.302e-52
Identity = 103/152 (67.76%), Postives = 124/152 (81.58%), Query Frame = 1
Query:  208 PEPKVKH--KEVSAVEDAESQQETEGNNKR-HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGF 654
            PE  VK   +E   V  ++S     G  K+ H+NVVFIGHVDAGKST GGQI+FL+G VD RT++KYE+EAK+K+RE+WY+++ +DTN+EER KGKTVEVGRA+FETE   FTILDAPGHKS+VPNMI GASQAD+ VLVISARKGEFETGF
Sbjct:  176 PEESVKEVMEEKEEVRKSKSVSIPSGAPKKEHVNVVFIGHVDAGKSTIGGQIMFLTGMVDRRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGF 327          
BLAST of FC920560 vs. ExPASy Swiss-Prot
Match: ERF3B_PONAB (Eukaryotic peptide chain release factor GTP-binding subunit ERF3B OS=Pongo abelii GN=GSPT2 PE=2 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 6.698e-52
Identity = 95/123 (77.24%), Postives = 112/123 (91.06%), Query Frame = 1
Query:  286 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGF 654
            K H+NVVFIGHVDAGKST GGQI+FL+G VD RT++KYE+EAK+K+RE+WY+++ +DTN+EER KGKTVEVGRA+FETE   FTILDAPGHKS+VPNMI GASQAD+ VLVISARKGEFETGF
Sbjct:  201 KEHVNVVFIGHVDAGKSTIGGQIMFLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETERKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGF 323          
BLAST of FC920560 vs. ExPASy Swiss-Prot
Match: ERF3B_HUMAN (Eukaryotic peptide chain release factor GTP-binding subunit ERF3B OS=Homo sapiens GN=GSPT2 PE=1 SV=2)

HSP 1 Score: 203.756 bits (517), Expect = 6.698e-52
Identity = 95/123 (77.24%), Postives = 112/123 (91.06%), Query Frame = 1
Query:  286 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGF 654
            K H+NVVFIGHVDAGKST GGQI+FL+G VD RT++KYE+EAK+K+RE+WY+++ +DTN+EER KGKTVEVGRA+FETE   FTILDAPGHKS+VPNMI GASQAD+ VLVISARKGEFETGF
Sbjct:  201 KEHVNVVFIGHVDAGKSTIGGQIMFLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETERKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGF 323          
BLAST of FC920560 vs. ExPASy Swiss-Prot
Match: ERF3A_MOUSE (Eukaryotic peptide chain release factor GTP-binding subunit ERF3A OS=Mus musculus GN=Gspt1 PE=1 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.492e-51
Identity = 94/123 (76.42%), Postives = 112/123 (91.06%), Query Frame = 1
Query:  286 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGF 654
            K H+NVVFIGHVDAGKST GGQI++L+G VD RT++KYE+EAK+K+RE+WY+++ +DTN+EER KGKTVEVGRA+FETE   FTILDAPGHKS+VPNMI GASQAD+ VLVISARKGEFETGF
Sbjct:   72 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGF 194          
BLAST of FC920560 vs. ExPASy Swiss-Prot
Match: ERF3A_HUMAN (Eukaryotic peptide chain release factor GTP-binding subunit ERF3A OS=Homo sapiens GN=GSPT1 PE=1 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.492e-51
Identity = 94/123 (76.42%), Postives = 112/123 (91.06%), Query Frame = 1
Query:  286 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGF 654
            K H+NVVFIGHVDAGKST GGQI++L+G VD RT++KYE+EAK+K+RE+WY+++ +DTN+EER KGKTVEVGRA+FETE   FTILDAPGHKS+VPNMI GASQAD+ VLVISARKGEFETGF
Sbjct:   72 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGF 194          
BLAST of FC920560 vs. ExPASy Swiss-Prot
Match: ERF3_DEBHA (Eukaryotic peptide chain release factor GTP-binding subunit OS=Debaryomyces hansenii GN=SUP35 PE=3 SV=4)

HSP 1 Score: 190.274 bits (482), Expect = 7.664e-48
Identity = 92/154 (59.74%), Postives = 120/154 (77.92%), Query Frame = 1
Query:  193 SQPVHPEPKVKHKEVSAVEDAESQQETEGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGF 654
            S PV  + KV  ++V  V++   +    G  K H++++F+GHVDAGKST GG IL+L+G VD RT+ KYE+EAKD  R+ WY++++MDTN+EER  GKT+EVG+A+FETE  R+TILDAPGHK YV  MI GASQAD+G+LVISARKGE+ETGF
Sbjct:  248 STPVTSD-KVIQEQVDEVDEEVVKDMFGG--KDHVSIIFMGHVDAGKSTMGGNILYLTGSVDKRTVDKYEREAKDAGRQGWYLSWVMDTNKEERSDGKTIEVGKAYFETEKRRYTILDAPGHKMYVSEMIGGASQADVGILVISARKGEYETGF 398          
BLAST of FC920560 vs. ExPASy Swiss-Prot
Match: ERF3_YEAST (Eukaryotic peptide chain release factor GTP-binding subunit OS=Saccharomyces cerevisiae GN=SUP35 PE=1 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.001e-47
Identity = 96/183 (52.46%), Postives = 123/183 (67.21%), Query Frame = 1
Query:  196 QPVHPEPKVKHK-EVSAVEDAESQQETEGNN-----------------------------KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGF 654
            +PV  E K + K E+  VED +  + T   N                             K H++++F+GHVDAGKST GG +L+L+G VD RTI+KYE+EAKD  R+ WY++++MDTN+EER  GKT+EVG+A+FETE  R+TILDAPGHK YV  MI GASQAD+GVLVISARKGE+ETGF
Sbjct:  198 KPVQTEEKTEEKSELPKVEDLKISESTHNTNNANVTSADALIKEQEEEVDDEVVNDMFGGKDHVSLIFMGHVDAGKSTMGGNLLYLTGSVDKRTIEKYEREAKDAGRQGWYLSWVMDTNKEERNDGKTIEVGKAYFETEKRRYTILDAPGHKMYVSEMIGGASQADVGVLVISARKGEYETGF 380          
BLAST of FC920560 vs. ExPASy Swiss-Prot
Match: ERF3_ZYGRO (Eukaryotic peptide chain release factor GTP-binding subunit OS=Zygosaccharomyces rouxii GN=SUP35 PE=3 SV=2)

HSP 1 Score: 188.734 bits (478), Expect = 2.230e-47
Identity = 92/161 (57.14%), Postives = 119/161 (73.91%), Query Frame = 1
Query:  217 KVKHKEVSAVEDAES------QQETEGNN---------KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGF 654
            K+K KE  A  +A        +QE E +          K H++++F+GHVDAGKST GG IL+++G VD RT++KYE+EAKD  ++ WY++++MDTN EER  GKT+EVGRA+FETE  R+TILDAPGHK YV  MI GASQAD+G+LVISARKGE+ETGF
Sbjct:  197 KLKIKEEQAAANASGADSLIKEQEEEVDEGVVNDMFGGKDHMSIIFMGHVDAGKSTMGGNILYMTGSVDKRTVEKYEREAKDAGKQGWYLSWVMDTNREERDDGKTIEVGRAYFETEKRRYTILDAPGHKMYVSEMIGGASQADVGILVISARKGEYETGF 357          
BLAST of FC920560 vs. ExPASy Swiss-Prot
Match: ERF3_KLULA (Eukaryotic peptide chain release factor GTP-binding subunit OS=Kluyveromyces lactis GN=SUP35 PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.230e-47
Identity = 89/142 (62.68%), Postives = 114/142 (80.28%), Query Frame = 1
Query:  229 KEVSAVEDAESQQETEGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGF 654
            KE     D E  ++  G  K H++++F+GHVDAGKST GG +L+L+G VD RT++KYE+EAK+  R+ WY++++MDTN+EER  GKT+EVGRA+FETE  R+TILDAPGHK YV  MI GASQADIG+LVISARKGE+ETGF
Sbjct:  254 KEQEDEVDEEVVKDMFGG-KDHVSIIFMGHVDAGKSTMGGNLLYLTGSVDKRTVEKYEREAKEAGRQGWYLSWVMDTNKEERNDGKTIEVGRAYFETEKRRYTILDAPGHKMYVSEMIGGASQADIGILVISARKGEYETGF 394          
BLAST of FC920560 vs. ExPASy Swiss-Prot
Match: ERF3_DICDI (Eukaryotic peptide chain release factor GTP-binding subunit OS=Dictyostelium discoideum GN=erf3 PE=2 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.230e-47
Identity = 87/124 (70.16%), Postives = 104/124 (83.87%), Query Frame = 1
Query:  280 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETG 651
            +++ HLN+VF+GHVDAGKST  G I+ L+GQVD  T+ KYE+EAK+  RE W  AYIMDTNEEER KGKTVEVGRAHFET   R+TILDAPGH+ YVPNMI GA+QAD+G+LVIS++KGEFE G
Sbjct:  113 DSREHLNIVFLGHVDAGKSTLSGSIMVLTGQVDPHTLAKYEREAKENHREGWIYAYIMDTNEEERTKGKTVEVGRAHFETTKKRYTILDAPGHRLYVPNMIIGAAQADVGILVISSKKGEFEAG 236          
The following BLAST results are available for this feature:
BLAST of FC920560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ERF3B_MOUSE2.302e-5267.76Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3B_PONAB6.698e-5277.24Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3B_HUMAN6.698e-5277.24Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3A_MOUSE1.492e-5176.42Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3A_HUMAN1.492e-5176.42Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3_DEBHA7.664e-4859.74Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3_YEAST1.001e-4752.46Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3_ZYGRO2.230e-4757.14Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3_KLULA2.230e-4762.68Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3_DICDI2.230e-4770.16Eukaryotic peptide chain release factor GTP-bindin... [more]

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Properties
Property NameValue
Genbank descriptionC32010A01EF RVDevelop1 Citrus clementina cDNA clone C32010A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920560 ID=FC920560; Name=FC920560; organism=Citrus clementina; type=EST; length=654bp
GGGGGAATAAAAAGAGAAAGAAGAGAAACCCTAGGTGCCTTCATCACTAT
GGATATTGAGGAGGATATCCGCTCATTACAGCTTGACTCCGCAGAAGAGA
ATAATGGGGTGGTCAATCCTGGAGATGCAAGGCCAGAAGAAGTTGAGGTG
GTGGATAAGATGGAGGAAGATTCAGAGGAGGTGCAAGCAGTATCCCAGCC
TGTTCATCCTGAGCCTAAAGTGAAACACAAGGAAGTATCTGCGGTGGAAG
ATGCTGAATCTCAGCAAGAGACTGAAGGAAATAATAAGCGACACTTGAAT
GTTGTATTTATTGGTCATGTTGATGCTGGAAAGTCTACCACTGGAGGCCA
GATACTTTTTCTTAGTGGCCAGGTCGATGACCGTACAATTCAAAAATATG
AGAAAGAAGCAAAGGATAAAAGTAGAGAAAGCTGGTATATGGCGTATATT
ATGGACACTAATGAAGAGGAGAGGATCAAGGGTAAAACAGTAGAAGTTGG
AAGAGCTCACTTTGAAACTGAGACTACTAGATTTACAATTTTGGATGCGC
CGGGTCACAAGAGTTATGTCCCTAATATGATTAGTGGGGCATCTCAAGCT
GATATTGGTGTACTGGTAATTTCTGCTCGAAAAGGAGAGTTTGAAACTGG
GTTT
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