FC920564

Overview
NameFC920564
Unique NameFC920564
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920564_ssr71 microsatellite FC920564_ssr71:71..91. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC920564 vs. ExPASy Swiss-Prot
Match: PPIH_HUMAN (Peptidyl-prolyl cis-trans isomerase H OS=Homo sapiens GN=PPIH PE=1 SV=1)

HSP 1 Score: 270.396 bits (690), Expect = 6.515e-72
Identity = 123/172 (71.51%), Postives = 146/172 (84.88%), Query Frame = 2
Query:  119 NPKNPIVFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGEM 634
            +P NP+VFFDV+IG    GR+K+ELFAD+ PKTAENFRQFCTGE+RK G+P+GYKG  FHRVIKDFMIQ GDF+ GDG+G  SIY   F DENF  +H+ PGLLSMANSGP++NGCQFFITC+KCDWLD KHVVFG+++ DGLLV+RKIENV TGPNN+PKL   I++CGEM
Sbjct:    7 SPVNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVIKDFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFGKII-DGLLVMRKIENVPTGPNNKPKLPVVISQCGEM 177          
BLAST of FC920564 vs. ExPASy Swiss-Prot
Match: PPIH_BOVIN (Peptidyl-prolyl cis-trans isomerase H OS=Bos taurus GN=PPIH PE=2 SV=1)

HSP 1 Score: 270.396 bits (690), Expect = 6.515e-72
Identity = 123/172 (71.51%), Postives = 146/172 (84.88%), Query Frame = 2
Query:  119 NPKNPIVFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGEM 634
            +P NP+VFFDV+IG    GR+K+ELFAD+ PKTAENFRQFCTGE+RK G+P+GYKG  FHRVIKDFMIQ GDF+ GDG+G  SIY   F DENF  +H+ PGLLSMANSGP++NGCQFFITC+KCDWLD KHVVFG+++ DGLLV+RKIENV TGPNN+PKL   I++CGEM
Sbjct:    7 SPVNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVIKDFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFGKII-DGLLVMRKIENVPTGPNNKPKLPVVISQCGEM 177          
BLAST of FC920564 vs. ExPASy Swiss-Prot
Match: PPIH_RHIOR (Peptidyl-prolyl cis-trans isomerase H OS=Rhizopus oryzae GN=cyp7 PE=3 SV=1)

HSP 1 Score: 268.855 bits (686), Expect = 1.895e-71
Identity = 124/171 (72.51%), Postives = 144/171 (84.21%), Query Frame = 2
Query:  125 KNPIVFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSIY-GHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGEM 634
            + P+VFFD++IG +P GR+KMELF+DI P+TAENFRQ CTGEY++ G+P GYK C FHRVIKDFM+Q GDF+KGDG+G   IY G +F DENFI KHTG GLLSMANSGPNSNGCQFFITC  CD+LD KHVVFGR++ DGLL +RKIENVATGPNNRPKL   I ECG+M
Sbjct:    9 ERPVVFFDISIGDVPVGRMKMELFSDIVPRTAENFRQLCTGEYKRNGVPQGYKNCLFHRVIKDFMVQGGDFIKGDGTGAMCIYGGDRFADENFIEKHTGAGLLSMANSGPNSNGCQFFITCDACDFLDGKHVVFGRLV-DGLLTLRKIENVATGPNNRPKLPVKITECGQM 178          
BLAST of FC920564 vs. ExPASy Swiss-Prot
Match: CYP11_CAEEL (Peptidyl-prolyl cis-trans isomerase 11 OS=Caenorhabditis elegans GN=cyn-11 PE=2 SV=1)

HSP 1 Score: 258.07 bits (658), Expect = 3.346e-68
Identity = 120/172 (69.77%), Postives = 139/172 (80.81%), Query Frame = 2
Query:  119 NPKNPIVFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGEM 634
            +P NPIVF +VT G  P G I +ELFAD+ P+TAENFRQFCTGEY+K G+P GYK C FHRVIKDFMIQ GDF  GDG+G  SIYG KF DENF  KH GPG+LSMAN+G ++NGCQFFITCAK D+LDNKHVVFGRVL DG+L VRKIENV TG NN+PKL   + +CG++
Sbjct:   13 HPDNPIVFLEVTAGGAPIGTIVIELFADVTPRTAENFRQFCTGEYKKDGVPNGYKNCTFHRVIKDFMIQGGDFCNGDGTGLMSIYGSKFRDENFELKHIGPGMLSMANAGSDTNGCQFFITCAKTDFLDNKHVVFGRVL-DGMLTVRKIENVPTGANNKPKLPIVVVQCGQL 183          
BLAST of FC920564 vs. ExPASy Swiss-Prot
Match: PPIH_CRYNE (Peptidyl-prolyl cis-trans isomerase H OS=Cryptococcus neoformans GN=CYP3 PE=3 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 4.831e-67
Identity = 123/174 (70.69%), Postives = 137/174 (78.74%), Query Frame = 2
Query:  113 PPNPKNPIVFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGEM 634
            P     PIVFFD++IG  PAGRIKMELF DI PKTAENFRQ CTGE+R   +P GYK   FHRVI  FM+Q GDF++GDG+G  SIYG +F+DENF  KHTGPGLLSMANSGPN+NGCQFFIT A  ++LD KH VFGRV+ DGLL VRKIENV TG NNRPKL   IAECGEM
Sbjct:    7 PAGHTRPIVFFDISIGDTPAGRIKMELFDDITPKTAENFRQLCTGEHRINSVPQGYKKATFHRVIPQFMVQGGDFVRGDGTGSFSIYGAQFEDENFKVKHTGPGLLSMANSGPNTNGCQFFITTAPAEFLDGKHCVFGRVI-DGLLTVRKIENVPTGANNRPKLQVRIAECGEM 179          
BLAST of FC920564 vs. ExPASy Swiss-Prot
Match: PPIH_MOUSE (Peptidyl-prolyl cis-trans isomerase H OS=Mus musculus GN=Ppih PE=2 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 7.982e-62
Identity = 108/150 (72.00%), Postives = 128/150 (85.33%), Query Frame = 2
Query:  119 NPKNPIVFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIE 568
            +P NP+VFFDV+IG    GR+K+ELFAD+ PKTAENFRQFCTGE+RK G+P+GYKG  FHRVIKDFMIQ GDF+ GDG+G  SIY   F DENF  +H+ PGLLSMANSGP++NGCQFFITC+KCDWLD KHVVFG+++ DGLLV+RKIE
Sbjct:    7 SPVNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVIKDFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFGKII-DGLLVMRKIE 155          
BLAST of FC920564 vs. ExPASy Swiss-Prot
Match: PPIH_USTMA (Peptidyl-prolyl cis-trans isomerase H (Fragment) OS=Ustilago maydis GN=CYP3 PE=3 SV=2)

HSP 1 Score: 222.246 bits (565), Expect = 2.035e-57
Identity = 104/156 (66.67%), Postives = 121/156 (77.56%), Query Frame = 2
Query:  167 PAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGEM 634
            PAGR+K ELF+DI P+T+ENFRQ CTGE+R   +P GYK   FHR+IKDFM Q GDF+  DG+G  SIYG KFDDENF  KH   GLLSMANSGP +NGCQFFIT   C +LD KHVVFG+V+ DGLL +RK+ENV TG NNRPK+A  I +CGEM
Sbjct:    2 PAGRLKCELFSDIVPRTSENFRQLCTGEFRPNHVPEGYKNSIFHRIIKDFMCQGGDFINADGTGSRSIYGDKFDDENFTLKHDKAGLLSMANSGPGTNGCQFFITAQPCPFLDGKHVVFGKVV-DGLLTLRKMENVPTGANNRPKMAVRITQCGEM 156          
BLAST of FC920564 vs. ExPASy Swiss-Prot
Match: PPIH_EMENI (Peptidyl-prolyl cis-trans isomerase H OS=Emericella nidulans GN=cyp3 PE=3 SV=2)

HSP 1 Score: 213.386 bits (542), Expect = 9.451e-55
Identity = 107/171 (62.57%), Postives = 129/171 (75.44%), Query Frame = 2
Query:  128 NPIVFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYR-KGGLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSIYGH-KFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGEM 634
            NPIVFFDV +G  P GR+K+ELFAD+ P+TAENFRQFCTGE + + G P GYKG +FHRVIKDFMIQ GDF+ GDG+G  +IYG  KF DENF  +H  PGLLSMANSGPN+NGCQFFIT     +L+ KHVVFG+V+ DG+ +VR IEN  T   ++P     I +CGEM
Sbjct:   15 NPIVFFDVALGGEPLGRLKLELFADVTPRTAENFRQFCTGESKNQQGRPQGYKGSKFHRVIKDFMIQGGDFVNGDGTGSCTIYGTPKFSDENFTLRHDRPGLLSMANSGPNTNGCQFFITTTATPFLNGKHVVFGQVI-DGMDIVRMIENTRT-TRDKPNQDVVIIQCGEM 183          
BLAST of FC920564 vs. ExPASy Swiss-Prot
Match: PPIH_ASPFU (Peptidyl-prolyl cis-trans isomerase H OS=Aspergillus fumigatus GN=cyp3 PE=3 SV=2)

HSP 1 Score: 213.001 bits (541), Expect = 1.234e-54
Identity = 107/179 (59.78%), Postives = 130/179 (72.63%), Query Frame = 2
Query:  104 HVRPPNPKNPIVFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKG-GLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSIYG-HKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGEM 634
            H  P    NPIVFFD+ +G +P GRIKMELFAD+ P+TAENFR+FCTGE +   G P GYK  +FHRVIKDFMIQ GDF+ GDG+G  +IYG  KF DENF+ KH   G+LSMANSGPN+NGCQFFIT     +L+ KHVVFG+V+ DG+ +VR IEN  T   ++P     I +CGEM
Sbjct:    5 HSGPATNTNPIVFFDIALGGVPLGRIKMELFADVTPRTAENFRRFCTGESKNSQGKPQGYKNSKFHRVIKDFMIQGGDFVNGDGTGSCTIYGTPKFADENFVLKHDRAGVLSMANSGPNTNGCQFFITTTATPFLNGKHVVFGQVV-DGMDIVRMIENTRT-IRDKPSQDVIITQCGEM 181          
BLAST of FC920564 vs. ExPASy Swiss-Prot
Match: PPIH_ASPOR (Peptidyl-prolyl cis-trans isomerase H OS=Aspergillus oryzae GN=cyp3 PE=3 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 2.750e-54
Identity = 108/171 (63.16%), Postives = 128/171 (74.85%), Query Frame = 2
Query:  128 NPIVFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKG-GLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSIYGH-KFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGEM 634
            NP+VFFD+T+G    GRIKMELF  I P+TAENFRQFCTGE +   G P GYK  +FHRVIKDFMIQ GDF+ GDG+G  +IYG  +F DENFI KH  PGLLSMANSGPN+NGCQFFIT     +L+NKHVVFG+V+ +G+ VVR IEN  T   ++P    TI +CGEM
Sbjct:   13 NPVVFFDITLGGESLGRIKMELFTSITPRTAENFRQFCTGESKSPQGRPQGYKNSKFHRVIKDFMIQGGDFVNGDGTGSRTIYGTPRFQDENFILKHDQPGLLSMANSGPNTNGCQFFITTTATPFLNNKHVVFGQVV-EGMDVVRMIENTRT-TRDKPNQDVTIIQCGEM 181          
The following BLAST results are available for this feature:
BLAST of FC920564 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 240
Match NameE-valueIdentityDescription
PPIH_HUMAN6.515e-7271.51Peptidyl-prolyl cis-trans isomerase H OS=Homo sapi... [more]
PPIH_BOVIN6.515e-7271.51Peptidyl-prolyl cis-trans isomerase H OS=Bos tauru... [more]
PPIH_RHIOR1.895e-7172.51Peptidyl-prolyl cis-trans isomerase H OS=Rhizopus ... [more]
CYP11_CAEEL3.346e-6869.77Peptidyl-prolyl cis-trans isomerase 11 OS=Caenorha... [more]
PPIH_CRYNE4.831e-6770.69Peptidyl-prolyl cis-trans isomerase H OS=Cryptococ... [more]
PPIH_MOUSE7.982e-6272.00Peptidyl-prolyl cis-trans isomerase H OS=Mus muscu... [more]
PPIH_USTMA2.035e-5766.67Peptidyl-prolyl cis-trans isomerase H (Fragment) O... [more]
PPIH_EMENI9.451e-5562.57Peptidyl-prolyl cis-trans isomerase H OS=Emericell... [more]
PPIH_ASPFU1.234e-5459.78Peptidyl-prolyl cis-trans isomerase H OS=Aspergill... [more]
PPIH_ASPOR2.750e-5463.16Peptidyl-prolyl cis-trans isomerase H OS=Aspergill... [more]

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Properties
Property NameValue
Genbank descriptionC32010A06EF RVDevelop1 Citrus clementina cDNA clone C32010A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920564 ID=FC920564; Name=FC920564; organism=Citrus clementina; type=EST; length=697bp
GGAGAGTCCGAAGTCGAAGCCCTCAGTAGCTTGTAGAGTTAAGGAAGTGC
GAGAGAAATTGATGGCATCCGGAGGAGGAGGAGGAGGAGGAAGTGTGGAG
TGGCACGTGCGGCCTCCAAACCCAAAAAACCCAATCGTATTTTTCGATGT
CACAATCGGTACCATCCCCGCTGGTCGAATCAAGATGGAGCTCTTCGCCG
ACATCGCCCCTAAAACCGCCGAAAATTTTAGGCAGTTCTGCACCGGCGAG
TACAGAAAGGGAGGATTGCCTGTTGGTTACAAGGGATGCCAGTTCCATAG
GGTGATCAAGGATTTTATGATTCAAGCTGGTGATTTTCTGAAGGGTGATG
GTAGTGGATGTACTTCAATTTATGGACATAAGTTTGATGATGAAAATTTT
ATTGCTAAACACACTGGTCCAGGTCTATTATCTATGGCAAACAGCGGACC
AAATTCTAATGGGTGCCAGTTCTTTATCACTTGTGCAAAATGTGATTGGC
TTGACAATAAGCACGTTGTATTTGGGAGGGTGCTTGGAGATGGTCTTTTG
GTTGTCAGGAAGATCGAGAATGTGGCCACCGGACCCAACAACCGGCCTAA
ACTGGCATGCACTATCGCAGAATGTGGAGAAATGTGAAACTGATAACTTG
AAAACAATTGTGGCATTGCTAAGGACTGATAAAAAAGAAATATCCGT
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