FC920577

Overview
NameFC920577
Unique NameFC920577
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length349
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11919 contig Ccv1_Contig11919:332..680. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920577 vs. ExPASy Swiss-Prot
Match: DFRA_MALDO (Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase OS=Malus domestica GN=DFR PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.854e-16
Identity = 45/104 (43.27%), Postives = 66/104 (63.46%), Query Frame = 2
Query:   47 GPEKEVVCVTGANGFIGTWVVRTLLEKGYTNIHAAIFPGTD---ASHLFSLPGATKLNVRVYEANILDNEAISRAIEGCKGVFHLASPNTLDDPKDSEKELLIP 349
            G E E VCVTGA+GFIG+W+V  LLE GYT + A +   T+     HL  LP A + ++ +++A++ D  +   AI+GC GVFH+A+P   +  KD E E++ P
Sbjct:    2 GSESESVCVTGASGFIGSWLVMRLLEHGYT-VRATVRDPTNQKKVKHLLDLPKA-ETHLTLWKADLADEGSFDEAIQGCSGVFHVATPMDFES-KDPENEVIKP 102          
BLAST of FC920577 vs. ExPASy Swiss-Prot
Match: DFRA_PYRCO (Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase OS=Pyrus communis GN=DFR PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.750e-15
Identity = 44/104 (42.31%), Postives = 66/104 (63.46%), Query Frame = 2
Query:   47 GPEKEVVCVTGANGFIGTWVVRTLLEKGYTNIHAAIFPGTD---ASHLFSLPGATKLNVRVYEANILDNEAISRAIEGCKGVFHLASPNTLDDPKDSEKELLIP 349
            G E E VCVTGA+GFIG+W+V  LLE GYT + A +   T+     HL  LP A + ++ +++A++ D  +   AI+GC GVFH+A+P   +  +D E E++ P
Sbjct:    2 GSESESVCVTGASGFIGSWLVMRLLEHGYT-VRATVRDPTNQKKVKHLLDLPKA-ETHLTLWKADLADEGSFDEAIQGCSGVFHVATPMDFES-RDPENEVIKP 102          
BLAST of FC920577 vs. ExPASy Swiss-Prot
Match: DFRA_GERHY (Dihydroflavonol-4-reductase OS=Gerbera hybrida GN=DFR PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.091e-15
Identity = 43/98 (43.88%), Postives = 62/98 (63.27%), Query Frame = 2
Query:   65 VCVTGANGFIGTWVVRTLLEKGYTNIHAAIFPGTD---ASHLFSLPGATKLNVRVYEANILDNEAISRAIEGCKGVFHLASPNTLDDPKDSEKELLIP 349
            VCVTGA GFIG+W+V  LLE+GY  +HA +    D     HL  LP A + N+++++A++    +   AI+GC GVFHLA+P   +  KD E E++ P
Sbjct:    9 VCVTGAAGFIGSWLVMRLLERGYV-VHATVRDPGDLKKVKHLLELPKA-QTNLKLWKADLTQEGSFDEAIQGCHGVFHLATPMDFES-KDPENEIIKP 103          
BLAST of FC920577 vs. ExPASy Swiss-Prot
Match: DFRA_DIACA (Dihydroflavonol-4-reductase OS=Dianthus caryophyllus GN=A PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.648e-15
Identity = 41/99 (41.41%), Postives = 61/99 (61.62%), Query Frame = 2
Query:   59 EVVCVTGANGFIGTWVVRTLLEKGYTNIHAAIFPGT--DASHLFSLPGATKLNVRVYEANILDNEAISRAIEGCKGVFHLASPNTLDDPKDSEKELLIP 349
            E VCVTGA+GFIG+W++  LLE+GYT       P       HL  LP A K N+ +++A++ +  +   A++GC GVFH+A+P   +  KD E E++ P
Sbjct:   23 ETVCVTGASGFIGSWLIMRLLERGYTVRATVRDPDNTKKVQHLLDLPNA-KTNLTLWKADLHEEGSFDAAVDGCTGVFHIATPMDFES-KDPENEMIKP 119          
BLAST of FC920577 vs. ExPASy Swiss-Prot
Match: DFRA_ARATH (Dihydroflavonol-4-reductase OS=Arabidopsis thaliana GN=DFRA PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 1.934e-14
Identity = 43/101 (42.57%), Postives = 61/101 (60.40%), Query Frame = 2
Query:   53 EKEVVCVTGANGFIGTWVVRTLLEKGYTNIHAAIFPGT--DASHLFSLPGATKLNVRVYEANILDNEAISRAIEGCKGVFHLASPNTLDDPKDSEKELLIP 349
            +KE VCVTGA+GFIG+W+V  LLE+GY        PG      HL  LP A  L + +++A++ +  +   AI GC GVFH+A+P   +  KD E E++ P
Sbjct:    4 QKETVCVTGASGFIGSWLVMRLLERGYFVRATVRDPGNLKKVQHLLDLPNAKTL-LTLWKADLSEEGSYDDAINGCDGVFHVATPMDFES-KDPENEVIKP 102          
BLAST of FC920577 vs. ExPASy Swiss-Prot
Match: DFRA_PETHY (Dihydroflavonol-4-reductase OS=Petunia hybrida GN=DFRA PE=2 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 4.309e-14
Identity = 42/98 (42.86%), Postives = 62/98 (63.27%), Query Frame = 2
Query:   65 VCVTGANGFIGTWVVRTLLEKGYTNIHAAIFPGTD---ASHLFSLPGATKLNVRVYEANILDNEAISRAIEGCKGVFHLASPNTLDDPKDSEKELLIP 349
            VCVTGA GFIG+W+V  LLE+GY N+HA +    +     HL  LP A   N+ +++A++    +   AI+GC+GVFH+A+P   +  KD E E++ P
Sbjct:   18 VCVTGAAGFIGSWLVMRLLERGY-NVHATVRDPENKKKVKHLLELPKA-DTNLTLWKADLTVEGSFDEAIQGCQGVFHVATPMDFES-KDPENEVIKP 112          
BLAST of FC920577 vs. ExPASy Swiss-Prot
Match: DFRA_VITVI (Dihydroflavonol-4-reductase OS=Vitis vinifera GN=DFR PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.628e-14
Identity = 42/104 (40.38%), Postives = 65/104 (62.50%), Query Frame = 2
Query:   47 GPEKEVVCVTGANGFIGTWVVRTLLEKGYTNIHAAIFPGTD---ASHLFSLPGATKLNVRVYEANILDNEAISRAIEGCKGVFHLASPNTLDDPKDSEKELLIP 349
            G + E VCVTGA+GFIG+W+V  LLE+  T + A +   T+     HL  LP A + ++ +++A++ D  +   AI+GC GVFH+A+P   +  KD E E++ P
Sbjct:    2 GSQSETVCVTGASGFIGSWLVMRLLERRLT-VRATVRDPTNVKKVKHLLDLPKA-ETHLTLWKADLADEGSFDEAIKGCTGVFHVATPMDFES-KDPENEVIKP 102          
BLAST of FC920577 vs. ExPASy Swiss-Prot
Match: DFRA_CALCH (Dihydroflavonol-4-reductase OS=Callistephus chinensis GN=F PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.351e-14
Identity = 42/97 (43.30%), Postives = 58/97 (59.79%), Query Frame = 2
Query:   65 VCVTGANGFIGTWVVRTLLEKGYTNIHAAIFPG--TDASHLFSLPGATKLNVRVYEANILDNEAISRAIEGCKGVFHLASPNTLDDPKDSEKELLIP 349
            VCVTGA GFIG+W+V  LLE+GY        PG      HL  LP A + N+ +++A++    +   AIEGC GVFH+A+P   +  KD E E++ P
Sbjct:    9 VCVTGAAGFIGSWLVMRLLERGYIVRATVRNPGDMKKVKHLLELPKA-ETNLTLWKADLTQEGSFDEAIEGCHGVFHVATPMDFES-KDPENEIIKP 103          
BLAST of FC920577 vs. ExPASy Swiss-Prot
Match: DFRA_ANTMA (Dihydroflavonol-4-reductase OS=Antirrhinum majus GN=DFRA PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.638e-13
Identity = 43/102 (42.16%), Postives = 58/102 (56.86%), Query Frame = 2
Query:   50 PEKEVVCVTGANGFIGTWVVRTLLEKGYTNIHAAIFPGT--DASHLFSLPGATKLNVRVYEANILDNEAISRAIEGCKGVFHLASPNTLDDPKDSEKELLIP 349
            P    VCVTGA GFIG+W+V  LLE+GYT       PG      HL  LP A   N+ +++A++    +   AI+GC+GVFHLA+    D   D E E++ P
Sbjct:   15 PSSTTVCVTGAAGFIGSWLVMRLLERGYTVRATVRDPGNMKKVKHLIELPKA-DTNLTLWKADMTVEGSFDEAIQGCEGVFHLATSMEFDS-VDPENEVIKP 114          
BLAST of FC920577 vs. ExPASy Swiss-Prot
Match: DFRA_SOLLC (Dihydroflavonol-4-reductase OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.765e-13
Identity = 41/103 (39.81%), Postives = 62/103 (60.19%), Query Frame = 2
Query:   50 PEKEVVCVTGANGFIGTWVVRTLLEKGYTNIHAAIFPGTD---ASHLFSLPGATKLNVRVYEANILDNEAISRAIEGCKGVFHLASPNTLDDPKDSEKELLIP 349
            P+   V VTG  GFIG+W+V  LLE+GY N+HA +    +     HL  LP A   N+ +++A++    +   AI+GC+GVFH+A+P   +  KD E E++ P
Sbjct:   15 PKTTTVWVTGGAGFIGSWLVMRLLERGY-NVHATVRDPENQKKVKHLLELPKA-DTNLTLWKADLAVEGSFDEAIQGCQGVFHVATPMDFES-KDPENEVIKP 114          
The following BLAST results are available for this feature:
BLAST of FC920577 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
DFRA_MALDO7.854e-1643.27Bifunctional dihydroflavonol 4-reductase/flavanone... [more]
DFRA_PYRCO1.750e-1542.31Bifunctional dihydroflavonol 4-reductase/flavanone... [more]
DFRA_GERHY5.091e-1543.88Dihydroflavonol-4-reductase OS=Gerbera hybrida GN=... [more]
DFRA_DIACA6.648e-1541.41Dihydroflavonol-4-reductase OS=Dianthus caryophyll... [more]
DFRA_ARATH1.934e-1442.57Dihydroflavonol-4-reductase OS=Arabidopsis thalian... [more]
DFRA_PETHY4.309e-1442.86Dihydroflavonol-4-reductase OS=Petunia hybrida GN=... [more]
DFRA_VITVI5.628e-1440.38Dihydroflavonol-4-reductase OS=Vitis vinifera GN=D... [more]
DFRA_CALCH7.351e-1443.30Dihydroflavonol-4-reductase OS=Callistephus chinen... [more]
DFRA_ANTMA1.638e-1342.16Dihydroflavonol-4-reductase OS=Antirrhinum majus G... [more]
DFRA_SOLLC4.765e-1339.81Dihydroflavonol-4-reductase OS=Solanum lycopersicu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32010B12EF RVDevelop1 Citrus clementina cDNA clone C32010B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920577 ID=FC920577; Name=FC920577; organism=Citrus clementina; type=EST; length=349bp
GGAACTTCACAAAATCGTCACATCATTAAAGAGAAAAAGGATGAACGGGC
CAGAAAAGGAAGTAGTTTGCGTGACTGGAGCCAACGGGTTCATCGGAACA
TGGGTGGTCCGAACCCTTCTAGAAAAAGGCTACACCAACATTCACGCTGC
CATCTTTCCCGGCACTGACGCATCCCACTTGTTCAGCCTCCCAGGCGCCA
CCAAGCTCAACGTCCGTGTTTACGAGGCCAATATCTTAGACAACGAAGCA
ATTTCCAGGGCCATCGAGGGTTGCAAGGGGGTCTTCCATCTTGCCTCTCC
TAACACCCTGGATGATCCCAAGGACTCCGAAAAGGAGCTGCTCATTCCT
back to top