FC920582

Overview
NameFC920582
Unique NameFC920582
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length654
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig2507 contig Ccv1_Contig2507:1..643. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920582 vs. ExPASy Swiss-Prot
Match: FABG1_BRANA (3-oxoacyl-[acyl-carrier-protein] reductase 1, chloroplastic OS=Brassica napus GN=gbkr1 PE=1 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.442e-46
Identity = 96/165 (58.18%), Postives = 123/165 (74.55%), Query Frame = 3
Query:  129 LMAAVAGSNIVAFKSAATSAKFGDRKIPQFRQWSPVQVKALPRPSVELKSRWNSSFPSSGIRAQVATIEQATNEAVQNVEAPVAVVTGASRGIGRAVATSLGKAGCKVLVNYARSSKEAEEVCKEIEASGGQALTFGGDVSKEADVESMIKTAVDAWGTVDILIN 623
            +   VA + + + K+     K G R+I Q RQWSP+Q  A+P   +       S   S+ ++AQ   +EQ+T EAV  VE+PV VVTGASRGIG+A+A SLGKAGCKVLVNYARS+KEAEEV K+IEA GGQA+TFGGDVSKEADVE+M+KTA+DAWGT+D+++N
Sbjct:    1 MATTVAATKLTSLKAVK---KLGFREIRQVRQWSPLQ-SAMPHFGMLRCGSRQSFATSTVVKAQATAVEQSTGEAVPKVESPVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKEAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDAWGTIDVVVN 161          
BLAST of FC920582 vs. ExPASy Swiss-Prot
Match: FABG3_BRANA (3-oxoacyl-[acyl-carrier-protein] reductase 3, chloroplastic OS=Brassica napus GN=bkr3 PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 4.606e-45
Identity = 96/165 (58.18%), Postives = 124/165 (75.15%), Query Frame = 3
Query:  129 LMAAVAGSNIVAFKSAATSAKFGDRKIPQFRQWSPVQVKALPRPSVELKSRWNSSFPSSGIRAQVATIEQATNEAVQNVEAPVAVVTGASRGIGRAVATSLGKAGCKVLVNYARSSKEAEEVCKEIEASGGQALTFGGDVSKEADVESMIKTAVDAWGTVDILIN 623
            +   VA + + + K+     K G R+I Q RQW+P+Q  ++P       SR  S   S+ ++AQ   +EQ+T EAV  VE+PV VVTGASRGIG+A+A SLGKAGCKVLVNYARS+KEAEEV K+IEA GGQA+TFGGDVSKEADVE+M+KTA+DAWGT+D+++N
Sbjct:    1 MATTVAATKLTSLKAVK---KLGFREIRQVRQWTPLQ-SSMPH----FGSR-QSFATSTVVKAQATAVEQSTGEAVPKVESPVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKEAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDAWGTIDVVVN 156          
BLAST of FC920582 vs. ExPASy Swiss-Prot
Match: FABG_CUPLA (3-oxoacyl-[acyl-carrier-protein] reductase, chloroplastic OS=Cuphea lanceolata GN=CLKR27 PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.134e-43
Identity = 103/164 (62.80%), Postives = 117/164 (71.34%), Query Frame = 3
Query:  135 AAVAG-SNIVAFKSAATSAKFGDRKIPQFRQWSPVQVKALPRPSVELKSRWNSSFPSSGIRAQVATIEQATNEAVQNVEAPVAVVTGASRGIGRAVATSLGKAGCKVLVNYARSSKEAEEVCKEIEASGGQALTFGGDVSKEADVESMIKTAVDAWGTVDILIN 623
            A  AG S  VA KS       G R++   +Q SPV        +         S  +SGIRAQVAT E+ +  A Q+VE+PV +VTGASRGIG+A+A SLGKAGCKVLVNYARSSKEAEEV KEIEA GGQALTFGGDVSKE DVE+MIKTAVDAWGTVDIL+N
Sbjct:    4 ATAAGCSGAVALKS------LGGRRLCIPQQLSPVLAGFGSHAAKSFPILSTRSIATSGIRAQVATAEKVSAGAGQSVESPVVIVTGASRGIGKAIALSLGKAGCKVLVNYARSSKEAEEVSKEIEAFGGQALTFGGDVSKEEDVEAMIKTAVDAWGTVDILVN 161          
BLAST of FC920582 vs. ExPASy Swiss-Prot
Match: FABG5_BRANA (3-oxoacyl-[acyl-carrier-protein] reductase 5, chloroplastic (Fragment) OS=Brassica napus GN=bkr1 PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 4.311e-43
Identity = 92/161 (57.14%), Postives = 117/161 (72.67%), Query Frame = 3
Query:  141 VAGSNIVAFKSAATSAKFGDRKIPQFRQWSPVQVKALPRPSVELKSRWNSSFPSSGIRAQVATIEQATNEAVQNVEAPVAVVTGASRGIGRAVATSLGKAGCKVLVNYARSSKEAEEVCKEIEASGGQALTFGGDVSKEADVESMIKTAVDAWGTVDILIN 623
            VA + + + K  AT+ K G R+I Q RQW+P++      P   +     S+   +  +AQ    EQ T EAV  VE+PV VVTGASRGIG+A+A SLGKAGCKVLVNYARS+KEAEEV K+IE  GG+A+TFGGDVSKEADV+SM+KTAVD WGT+D+++N
Sbjct:    3 VAATKLTSLK--ATAGKLGYREICQVRQWAPLKSAM---PHFGMLRCATSTVVKAQAQAQATATEQTTEEAVPKVESPVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKEAEEVSKQIEEYGGEAITFGGDVSKEADVDSMMKTAVDKWGTIDVVVN 158          
BLAST of FC920582 vs. ExPASy Swiss-Prot
Match: FABG_ARATH (3-oxoacyl-[acyl-carrier-protein] reductase, chloroplastic OS=Arabidopsis thaliana GN=At1g24360 PE=2 SV=2)

HSP 1 Score: 174.096 bits (440), Expect = 5.630e-43
Identity = 90/165 (54.55%), Postives = 121/165 (73.33%), Query Frame = 3
Query:  129 LMAAVAGSNIVAFKSAATSAKFGDRKIPQFRQWSPVQVKALPRPSVELKSRWNSSFPSSGIRAQVATIEQATNEAVQNVEAPVAVVTGASRGIGRAVATSLGKAGCKVLVNYARSSKEAEEVCKEIEASGGQALTFGGDVSKEADVESMIKTAVDAWGTVDILIN 623
            + AAVA   +++ K+ A   K G R+I Q RQ +P+   A+P   + L+ R    F +S ++AQ    EQ+  E VQ VE+PV V+TGASRGIG+A+A +LGKAGCKVLVNYARS+KEAEEV K+IE  GGQA+TFGGDVSK  DV++M+KTA+D WGT+D+++N
Sbjct:    1 MAAAVAAPRLISLKAVA---KLGFREISQIRQLAPLH-SAIPHFGM-LRCRSRQPFSTSVVKAQATATEQSPGEVVQKVESPVVVITGASRGIGKAIALALGKAGCKVLVNYARSAKEAEEVAKQIEEYGGQAITFGGDVSKATDVDAMMKTALDKWGTIDVVVN 160          
BLAST of FC920582 vs. ExPASy Swiss-Prot
Match: FABG2_BRANA (3-oxoacyl-[acyl-carrier-protein] reductase 2, chloroplastic OS=Brassica napus GN=bkr2 PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.638e-42
Identity = 95/167 (56.89%), Postives = 121/167 (72.46%), Query Frame = 3
Query:  138 AVAGSNIVAFKSAATSAKFGDRKIPQFRQWSPVQVKALPRPSVELKSRWNSSFPSSGI---RAQVATIEQATNE--AVQNVEAPVAVVTGASRGIGRAVATSLGKAGCKVLVNYARSSKEAEEVCKEIEASGGQALTFGGDVSKEADVESMIKTAVDAWGTVDILIN 623
            ++AG  + + K+AA   K G R+I   RQW+PV         +   SR   +  SS +   +AQ    EQ+T E  AV  VE+PV VVTGASRGIG+A+A SLGKAGCKVLVNYARS+KEAE+V K+IEA GGQA+TFGGDVSKEADV++M+KTAVDAWGT+D+++N
Sbjct:    5 SIAGPRLTSLKTAA--GKLGYREICHVRQWAPVHSPMPHFGMLRCGSRRPFATSSSTVVQAQAQATAAEQSTGEEEAVPKVESPVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKEAEQVSKQIEAYGGQAITFGGDVSKEADVDAMMKTAVDAWGTIDVVVN 169          
BLAST of FC920582 vs. ExPASy Swiss-Prot
Match: FABG4_BRANA (3-oxoacyl-[acyl-carrier-protein] reductase 4 (Fragment) OS=Brassica napus GN=bkr4 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.939e-35
Identity = 71/92 (77.17%), Postives = 84/92 (91.30%), Query Frame = 3
Query:  348 EAVQNVEAPVAVVTGASRGIGRAVATSLGKAGCKVLVNYARSSKEAEEVCKEIEASGGQALTFGGDVSKEADVESMIKTAVDAWGTVDILIN 623
            EAV  VE+PV VVTGASRGIG+A+A SLGKAGCKVLVNYARS+KEAEEV K+IE  GGQA+TFGGDVSKEADV++M+KTAVD WGT+D+++N
Sbjct:    7 EAVPKVESPVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKEAEEVSKQIEEYGGQAITFGGDVSKEADVDAMMKTAVDKWGTIDVVVN 98          
BLAST of FC920582 vs. ExPASy Swiss-Prot
Match: DHG2_BACME (Glucose 1-dehydrogenase 2 OS=Bacillus megaterium GN=gdhII PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.111e-17
Identity = 43/83 (51.81%), Postives = 62/83 (74.70%), Query Frame = 3
Query:  375 VAVVTGASRGIGRAVATSLGKAGCKVLVNYARSSKEAEEVCKEIEASGGQALTFGGDVSKEADVESMIKTAVDAWGTVDILIN 623
            V VVTG S+G+GRA+A   G+   KV+VNY  + +EA EV KEIE +GGQA+   GDV+KE DV ++++TAV  +G++D++IN
Sbjct:    9 VVVVTGGSKGLGRAMAVRFGQEQSKVVVNYRSNEEEALEVKKEIEEAGGQAIIVRGDVTKEEDVVNLVETAVKEFGSLDVMIN 91          
BLAST of FC920582 vs. ExPASy Swiss-Prot
Match: YUSS_BACSU (Short-chain dehydrogenase/reductase homolog yusS OS=Bacillus subtilis GN=yusS PE=5 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.182e-16
Identity = 44/88 (50.00%), Postives = 57/88 (64.77%), Query Frame = 3
Query:  360 NVEAPVAVVTGASRGIGRAVATSLGKAGCKVLVNYARSSKEAEEVCKEIEASGGQALTFGGDVSKEADVESMIKTAVDAWGTVDILIN 623
            NV   +A+VTG   GIG+A +  L K G  V VNY+RS  EAEE  + I+ +GGQA     DVSK +DV+ MI+  V+  GTVDIL+N
Sbjct:    2 NVLNKIALVTGGGTGIGKAASMELAKRGAIVAVNYSRSQSEAEETVEMIQKAGGQAFAIQADVSKNSDVQDMIQAIVNTHGTVDILVN 89          
BLAST of FC920582 vs. ExPASy Swiss-Prot
Match: DHGA_BACME (Glucose 1-dehydrogenase A OS=Bacillus megaterium GN=gdhA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.439e-16
Identity = 38/83 (45.78%), Postives = 60/83 (72.29%), Query Frame = 3
Query:  375 VAVVTGASRGIGRAVATSLGKAGCKVLVNYARSSKEAEEVCKEIEASGGQALTFGGDVSKEADVESMIKTAVDAWGTVDILIN 623
            V V+TG S G+GRA+A   G+   KV++NY  + +EA +  KE+E +GGQA+   GDV+KE DV ++++TA+  +GT+D++IN
Sbjct:    9 VVVITGGSTGLGRAMAVRFGQEEAKVVINYYNNEEEALDAKKEVEEAGGQAIIVQGDVTKEEDVVNLVQTAIKEFGTLDVMIN 91          
The following BLAST results are available for this feature:
BLAST of FC920582 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
FABG1_BRANA2.442e-4658.183-oxoacyl-[acyl-carrier-protein] reductase 1, chlo... [more]
FABG3_BRANA4.606e-4558.183-oxoacyl-[acyl-carrier-protein] reductase 3, chlo... [more]
FABG_CUPLA1.134e-4362.803-oxoacyl-[acyl-carrier-protein] reductase, chloro... [more]
FABG5_BRANA4.311e-4357.143-oxoacyl-[acyl-carrier-protein] reductase 5, chlo... [more]
FABG_ARATH5.630e-4354.553-oxoacyl-[acyl-carrier-protein] reductase, chloro... [more]
FABG2_BRANA1.638e-4256.893-oxoacyl-[acyl-carrier-protein] reductase 2, chlo... [more]
FABG4_BRANA1.939e-3577.173-oxoacyl-[acyl-carrier-protein] reductase 4 (Frag... [more]
DHG2_BACME3.111e-1751.81Glucose 1-dehydrogenase 2 OS=Bacillus megaterium G... [more]
YUSS_BACSU1.182e-1650.00Short-chain dehydrogenase/reductase homolog yusS O... [more]
DHGA_BACME3.439e-1645.78Glucose 1-dehydrogenase A OS=Bacillus megaterium G... [more]

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Properties
Property NameValue
Genbank descriptionC32010C08EF RVDevelop1 Citrus clementina cDNA clone C32010C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920582 ID=FC920582; Name=FC920582; organism=Citrus clementina; type=EST; length=654bp
TTTTTTTTTTTTTTTGGTTGGCTTGTATAAAAGGGAGCGAGCAAGGAAGC
GTCTCTCGAAGCCATTACCACAAAACTTCATTTCTGGCTACCCTCTTGTC
TTGGATTATTTCGTTTCGCGGAAAACCTCTCATGGCTGCCGTCGCCGGAT
CCAACATTGTCGCGTTCAAATCGGCGGCTACTTCCGCGAAATTCGGTGAC
CGAAAAATCCCGCAGTTTCGTCAATGGTCTCCTGTTCAGGTTAAGGCTCT
GCCTCGCCCTTCCGTTGAGCTCAAGAGTAGATGGAACAGCTCCTTCCCTT
CTTCTGGAATCAGAGCTCAGGTTGCCACCATAGAACAAGCAACCAATGAA
GCAGTACAAAATGTGGAAGCTCCTGTGGCTGTGGTGACTGGTGCCTCTAG
GGGTATTGGCAGAGCAGTAGCGACGTCCTTGGGAAAAGCAGGTTGCAAGG
TCCTGGTAAATTATGCTAGGTCATCAAAGGAAGCCGAAGAAGTTTGCAAA
GAGATTGAGGCATCTGGCGGTCAGGCTCTTACTTTTGGTGGAGATGTTTC
CAAAGAAGCTGATGTGGAATCAATGATCAAAACTGCTGTCGATGCTTGGG
GAACTGTTGATATATTGATTAACATGCANGAATCACTAGAGATACATTGC
TCAT
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