FC920590

Overview
NameFC920590
Unique NameFC920590
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length688
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14165 contig Ccv1_Contig14165:1..689. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920590 vs. ExPASy Swiss-Prot
Match: GPAT3_HUMAN (Glycerol-3-phosphate acyltransferase 3 OS=Homo sapiens GN=AGPAT9 PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.129e-12
Identity = 56/188 (29.79%), Postives = 88/188 (46.81%), Query Frame = 3
Query:  132 SSIQEPLGKLRLRD--LLDISPTLTEAAGAIVDDSFTRCFKSNQPEPWNW-----------NIYLFPLWCFGVVFRYFILFPLRVIVLTIGWIIFLSSFIPVHSLLKGH---DKLRKKLERCLVELICSFFVASWTGVVKYHGPRPSMRPKQVFVANHTSMIDFIILEQMTAFAVIMQKHPGWVGLLQ 647
            S +++ L  LR RD  L D+     +   AIV+D  T+ F S +   WN            ++ L  +W  GV+ RY +L PLRV +  IG      S + + + L G      L+  L   +    C   V + +G + YH  +   +   + VANHTS ID +IL     +A++ Q H G +G++Q
Sbjct:   77 SPMEKGLSGLRGRDFELSDVFYFSKKGLEAIVEDEVTQRFSSEELVSWNLLTRTNVNFQYISLRLTMVWVLGVIVRYCVLLPLRVTLAFIG-----ISLLVIGTTLVGQLPDSSLKNWLSELVHLTCCRICVRALSGTIHYHNKQYRPQKGGICVANHTSPIDVLILTTDGCYAMVGQVHGGLMGIIQ 259          
BLAST of FC920590 vs. ExPASy Swiss-Prot
Match: GPT3L_DANRE (Glycerol-3-phosphate acyltransferase 3-like OS=Danio rerio GN=agpat9l PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.927e-12
Identity = 67/224 (29.91%), Postives = 100/224 (44.64%), Query Frame = 3
Query:   27 SRGNQLRMRSPGQLKSSSSELDLDRPNIEDYLPSGSSIQEPLGKLRLRDLLDISPTLTEAAGAIVDDSFTRCFKSNQPEPWNW-----------NIYLFPLWCFGVVFRYFILFPLRVIVLTIG--WIIFLSS---FIPVHSLLKGHDKLRKKLERCLVELICSFFVA-SWTGVVKYHGPRPSMRPKQVFVANHTSMIDFIILEQMTAFAVIMQKHPGWVGLLQ 647
            S  N L  R    L+    EL  +RP   D            G   L D+L  S    E+   IV+D  T+ F S +   WN            ++ L  LW  GVV RY IL PLR+ + TIG  W++  ++   F+P       + +++  L   LV L+C    A   +  + +H  +   +   + VANHTS ID +IL     +A++ Q H G +G+LQ
Sbjct:   67 SASNGLIQRDNSSLEQEIEELRRNRPKSADR-----------GDFTLSDVLYFSRKGFES---IVEDDVTQRFTSEELVSWNLLTRTNNNFQYISLRLTVLWVVGVVVRYCILLPLRITLTTIGLTWLVIGTTTVGFLP-------NCRVKNWLSE-LVHLMCYRICARGLSATIHFHNKQNRPKKGGICVANHTSPIDVVILANDGCYAMVGQVHGGLMGVLQ 268          
BLAST of FC920590 vs. ExPASy Swiss-Prot
Match: GPAT3_RAT (Glycerol-3-phosphate acyltransferase 3 OS=Rattus norvegicus GN=Agpat9 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.927e-12
Identity = 58/185 (31.35%), Postives = 87/185 (47.03%), Query Frame = 3
Query:  132 SSIQEPLGKLRLRD--LLDISPTLTEAAGAIVDDSFTRCFKSNQPEPWNW----NI---YLFP----LWCFGVVFRYFILFPLRVIVLTIGWIIFLSSFIPVHSLLKGHDKLRKKLERCLVELICSFFVASWTGVVKYHGPRPSMRPKQVFVANHTSMIDFIILEQMTAFAVIMQKHPGWVGLLQ 647
            S +++ L  LR RD  L D+     +   AIV+D  T+ F S +   WN     N+   Y+ P    +W  GV+ RY  L PLRV +  IG  + +     V  L      L+  L   +    C   V S +G + YH  +   +   + VANHTS ID +IL     +A++ Q H G +G++Q
Sbjct:   77 SPMEKGLSGLRGRDFELSDVFYFSKKGLEAIVEDEVTQRFSSEELVSWNLLTRTNVNFHYISPKLTIVWVLGVLVRYCFLLPLRVTLAFIGISLLIIGTTLVGQL--PDSSLKNWLSELVHLTCCRICVRSLSGTIHYHNKQYRPQKGGICVANHTSPIDVLILATDGCYAMVGQVHGGLMGIIQ 259          
BLAST of FC920590 vs. ExPASy Swiss-Prot
Match: GPAT3_MOUSE (Glycerol-3-phosphate acyltransferase 3 OS=Mus musculus GN=Agpat9 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.927e-12
Identity = 58/185 (31.35%), Postives = 87/185 (47.03%), Query Frame = 3
Query:  132 SSIQEPLGKLRLRD--LLDISPTLTEAAGAIVDDSFTRCFKSNQPEPWNW----NI---YLFP----LWCFGVVFRYFILFPLRVIVLTIGWIIFLSSFIPVHSLLKGHDKLRKKLERCLVELICSFFVASWTGVVKYHGPRPSMRPKQVFVANHTSMIDFIILEQMTAFAVIMQKHPGWVGLLQ 647
            S +++ L  LR RD  L D+     +   AIV+D  T+ F S +   WN     N+   Y+ P    +W  GV+ RY  L PLRV +  IG  + +     V  L      L+  L   +    C   V S +G + YH  +   +   + VANHTS ID +IL     +A++ Q H G +G++Q
Sbjct:   77 SPMEKGLSGLRGRDFELSDVFYFSKKGLEAIVEDEVTQRFSSEELVSWNLLTRTNVNFQYISPRLTMVWVLGVLVRYCFLLPLRVTLAFIGISLLIIGTTLVGQL--PDSSLKNWLSELVHLTCCRICVRSLSGTIHYHNKQYRPQKGGICVANHTSPIDVLILATDGCYAMVGQVHGGLMGIIQ 259          
BLAST of FC920590 vs. ExPASy Swiss-Prot
Match: GPAT3_CHICK (Glycerol-3-phosphate acyltransferase 3 OS=Gallus gallus GN=AGPAT9 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.249e-11
Identity = 51/157 (32.48%), Postives = 73/157 (46.50%), Query Frame = 3
Query:  213 AIVDDSFTRCFKSNQPEPWNW-----------NIYLFPLWCFGVVFRYFILFPLRVIVLTIGWIIFLSSFIPVHSLLKGHDKLRKKLERCLVELICS-FFVASWTGVVKYHGPRPSMRPKQVFVANHTSMIDFIILEQMTAFAVIMQKHPGWVGLLQ 647
            AIV+D  T+ F S +   WN            ++ L  +W  GV+ RY  L PLR  +  IG    +     V  L  G   L+  L   +V L CS   V + +G + YH      +   + VANHTS ID IIL     +A++ Q H G +G++Q
Sbjct:  109 AIVEDEVTQRFSSEELVSWNLLTRTNVNFHYVSLRLTVVWVIGVIVRYCFLLPLRFTLAAIGITSMIVGTTVVGQLPNG--SLKNYLSE-VVHLTCSRILVRALSGTIHYHNKENKPQKGGICVANHTSPIDAIILTNDGCYAMVGQVHGGLMGVIQ 262          
BLAST of FC920590 vs. ExPASy Swiss-Prot
Match: GPAT4_MOUSE (Glycerol-3-phosphate acyltransferase 4 OS=Mus musculus GN=Agpat6 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.631e-11
Identity = 61/194 (31.44%), Postives = 89/194 (45.88%), Query Frame = 3
Query:  108 IEDYLPSGSSIQEPLGKLRLRDLLDISPTLTEAAGAIVDDSFTRCFKSNQPEPWNW-----------NIYLFPLWCFGVVFRYFILFPLRVIVLTIGWIIFLSSFIPVHSLLKGHDK--LRKKLERCLVELIC-SFFVASWTGVVKYHGPRPSMRPKQVFVANHTSMIDFIILEQMTAFAVIMQKHPGWVGLLQ 647
            I++   SGSS  + L K    +L DI     +    I+DD  T+ F + + E WN            ++ L  LW  GV+ RY  L PLR+ +   G  + +     V  L  G  K  L K      V L+C    V + T ++ YH  +   R   + VANHTS ID IIL     +A++ Q H G +G++Q
Sbjct:   92 IKEIRRSGSS--KALDKTPEFELSDIFYFCRKGMETIMDDEVTKRFSAEELESWNLLSRTNYNFQYISLRLTILWGLGVLIRYCFLLPLRIALAFTGIGLLVVGTTMVGYLPNGRFKEFLSKH-----VHLMCYRICVRALTAIITYHNRKNRPRNGGICVANHTSPIDVIILASDGYYAMVGQVHGGLMGVIQ 278          
BLAST of FC920590 vs. ExPASy Swiss-Prot
Match: GPAT4_PONAB (Glycerol-3-phosphate acyltransferase 4 OS=Pongo abelii GN=AGPAT6 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 4.745e-11
Identity = 58/192 (30.21%), Postives = 85/192 (44.27%), Query Frame = 3
Query:  108 IEDYLPSGSSIQEPLGKLRLRDLLDISPTLTEAAGAIVDDSFTRCFKSNQPEPWNW-----------NIYLFPLWCFGVVFRYFILFPLRVIVLTIGWIIFLSSFIPVHSLLKGHDK-LRKKLERCLVELICSFFVASWTGVVKYHGPRPSMRPKQVFVANHTSMIDFIILEQMTAFAVIMQKHPGWVGLLQ 647
            I++   SGSS  + L      +L DI     +    I+DD  T+ F + + E WN            ++ L  LW  GV+ RY  L PLR+ +   G  + +     V  L  G  K    K    +   IC   V + T ++ YH      R   + VANHTS ID IIL     +A++ Q H G +G++Q
Sbjct:   92 IKEIRRSGSS--KALDNTPEFELSDIFYFCRKGMETIMDDEVTKRFSAEELESWNLLSRTNYNFQYISLRLTVLWGLGVLIRYCFLLPLRIALAFTGISLLVVGTTVVGYLPNGRFKEFMSKHVHLMCYRIC---VRALTAIITYHDRENRPRNGGICVANHTSPIDVIILASDGYYAMVGQVHGGLMGVIQ 278          
BLAST of FC920590 vs. ExPASy Swiss-Prot
Match: GPAT4_HUMAN (Glycerol-3-phosphate acyltransferase 4 OS=Homo sapiens GN=AGPAT6 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.745e-11
Identity = 58/192 (30.21%), Postives = 85/192 (44.27%), Query Frame = 3
Query:  108 IEDYLPSGSSIQEPLGKLRLRDLLDISPTLTEAAGAIVDDSFTRCFKSNQPEPWNW-----------NIYLFPLWCFGVVFRYFILFPLRVIVLTIGWIIFLSSFIPVHSLLKGHDK-LRKKLERCLVELICSFFVASWTGVVKYHGPRPSMRPKQVFVANHTSMIDFIILEQMTAFAVIMQKHPGWVGLLQ 647
            I++   SGSS  + L      +L DI     +    I+DD  T+ F + + E WN            ++ L  LW  GV+ RY  L PLR+ +   G  + +     V  L  G  K    K    +   IC   V + T ++ YH      R   + VANHTS ID IIL     +A++ Q H G +G++Q
Sbjct:   92 IKEIRRSGSS--KALDNTPEFELSDIFYFCRKGMETIMDDEVTKRFSAEELESWNLLSRTNYNFQYISLRLTVLWGLGVLIRYCFLLPLRIALAFTGISLLVVGTTVVGYLPNGRFKEFMSKHVHLMCYRIC---VRALTAIITYHDRENRPRNGGICVANHTSPIDVIILASDGYYAMVGQVHGGLMGVIQ 278          
BLAST of FC920590 vs. ExPASy Swiss-Prot
Match: GPAT3_XENLA (Glycerol-3-phosphate acyltransferase 3 OS=Xenopus laevis GN=agpat9 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.198e-11
Identity = 42/158 (26.58%), Postives = 75/158 (47.47%), Query Frame = 3
Query:  213 AIVDDSFTRCFKSNQPEPWNW-----------NIYLFPLWCFGVVFRYFILFPLRVIVLTIG--WIIFLSSFIPVHSLLKGHDKLRKKLERCLVELICSFFVASWTGVVKYHGPRPSMRPKQVFVANHTSMIDFIILEQMTAFAVIMQKHPGWVGLLQ 647
            AIV+D  T+ F S +   WN            ++ +  +W  G+  RY IL PLR+ + TIG  W++  ++ +        + +++      +  + C     + +  ++YH      +   + VANHTS ID IIL     +A++ Q H G +G++Q
Sbjct:  113 AIVEDEVTQRFSSEELISWNLLTRTNNNFHYVSLRVTLIWVLGLCVRYCILLPLRITLATIGISWLVLGATLVGQLP----NSRMKSWFSELVHLMCCRICARALSSAIQYHNKENKPKKGGICVANHTSPIDIIILANDGCYAMVGQVHGGLMGIIQ 266          
The following BLAST results are available for this feature:
BLAST of FC920590 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
GPAT3_HUMAN1.129e-1229.79Glycerol-3-phosphate acyltransferase 3 OS=Homo sap... [more]
GPT3L_DANRE1.927e-1229.91Glycerol-3-phosphate acyltransferase 3-like OS=Dan... [more]
GPAT3_RAT1.927e-1231.35Glycerol-3-phosphate acyltransferase 3 OS=Rattus n... [more]
GPAT3_MOUSE1.927e-1231.35Glycerol-3-phosphate acyltransferase 3 OS=Mus musc... [more]
GPAT3_CHICK1.249e-1132.48Glycerol-3-phosphate acyltransferase 3 OS=Gallus g... [more]
GPAT4_MOUSE1.631e-1131.44Glycerol-3-phosphate acyltransferase 4 OS=Mus musc... [more]
GPAT4_PONAB4.745e-1130.21Glycerol-3-phosphate acyltransferase 4 OS=Pongo ab... [more]
GPAT4_HUMAN4.745e-1130.21Glycerol-3-phosphate acyltransferase 4 OS=Homo sap... [more]
GPAT3_XENLA6.198e-1126.58Glycerol-3-phosphate acyltransferase 3 OS=Xenopus ... [more]
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Properties
Property NameValue
Genbank descriptionC32010D08EF RVDevelop1 Citrus clementina cDNA clone C32010D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920590 ID=FC920590; Name=FC920590; organism=Citrus clementina; type=EST; length=688bp
GTTAGCAAAGGTGAAGGTGAGGCTCCAGCCGAGGGAATCAATTGAGGATG
AGGAGTCCAGGCCAGCTGAAATCGTCAAGCTCCGAATTGGACTTGGACCG
ACCCAACATCGAAGACTATCTCCCTTCCGGATCCTCCATTCAAGAGCCTC
TCGGCAAGCTTCGCTTGCGTGATTTGCTTGACATTTCGCCTACGCTTACT
GAGGCTGCTGGTGCCATTGTCGATGATTCATTTACGCGGTGTTTCAAGTC
CAATCAACCAGAGCCTTGGAACTGGAATATATATTTGTTTCCTCTGTGGT
GTTTTGGTGTGGTCTTTCGTTACTTCATTCTTTTCCCTCTCAGGGTTATA
GTATTGACGATAGGATGGATAATATTCCTTTCGTCCTTCATTCCTGTGCA
TTCTCTGCTGAAAGGACATGATAAGTTGAGGAAAAAGCTAGAGAGGTGTT
TGGTGGAGTTAATTTGCAGTTTCTTTGTTGCTTCATGGACTGGAGTTGTC
AAGTACCATGGGCCAAGGCCGAGCATGCGGCCTAAGCAGGTTTTTGTGGC
CAATCATACTTCCATGATAGACTTTATCATCTTAGAGCAGATGACTGCAT
TTGCTGTTATTATGCAAAAGCATCCTGGATGGGTTGGACTACTTCAAGTA
CTATATTAGAGAGTGTAGGATGTATTTGGTTCATCGTT
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