FC920594

Overview
NameFC920594
Unique NameFC920594
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length650
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920594_ssr129 microsatellite FC920594_ssr129:129..140. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig12798 contig Ccv1_Contig12798:104..753. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920594 vs. ExPASy Swiss-Prot
Match: AMPL2_ARATH (Leucine aminopeptidase 2, chloroplastic OS=Arabidopsis thaliana GN=At4g30910 PE=2 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 7.266e-51
Identity = 106/168 (63.10%), Postives = 126/168 (75.00%), Query Frame = 2
Query:  146 LFCRGKLRMAHSIARATLGLTKPAQIDPLKISFAAKEVDVVEWKGDILAVGVTEKDMGKDDNSKFQNSILKKLDAQLGGLLSEASSEEDFTGKAGQSTVIRLPGIGSKRVGLIGLGQSASRAGDFRSLGESXXXXXXXXXXXXXXXXLASSDGLSDESKLTAASAVAS 649
            L+C  K   AH+IA ATLGLT+   +D  KISF+ KE+DV EWKGDILAVGVTEKDM KD NSKF+N ILKKLDA LGGLL++ S+EEDF+GK GQSTV+RLPG+GSKRVGLIGLG+SAS    F+SLGE+                LASS+  SDESKL++AS +AS
Sbjct:   49 LYCSSKAT-AHTIAHATLGLTQANSVDHPKISFSGKEIDVTEWKGDILAVGVTEKDMAKDANSKFENPILKKLDAHLGGLLADVSAEEDFSGKPGQSTVLRLPGLGSKRVGLIGLGKSASTPSAFQSLGEAVAAAAKASQASSVAVVLASSESFSDESKLSSASDIAS 215          
BLAST of FC920594 vs. ExPASy Swiss-Prot
Match: AMPL3_ARATH (Leucine aminopeptidase 3, chloroplastic OS=Arabidopsis thaliana GN=At4g30920 PE=2 SV=2)

HSP 1 Score: 199.519 bits (506), Expect = 1.239e-50
Identity = 104/160 (65.00%), Postives = 124/160 (77.50%), Query Frame = 2
Query:  170 MAHSIARATLGLTKPAQIDPLKISFAAKEVDVVEWKGDILAVGVTEKDMGKDDNSKFQNSILKKLDAQLGGLLSEASSEEDFTGKAGQSTVIRLPGIGSKRVGLIGLGQSASRAGDFRSLGESXXXXXXXXXXXXXXXXLASSDGLSDESKLTAASAVAS 649
            MAH+I+ ATLGLT+   +D  KISF+ KE+DV EWKGDILAVGVTEKDM KD NSKF+N ILKKLDA LGGLL++ SSEEDF+GK GQSTV+RLPG+GSKRVGLIGLG+SAS    F+SLGE+                LASS+ +S+ESKL +ASA+AS
Sbjct:   57 MAHTISHATLGLTQANSVDHPKISFSGKEIDVTEWKGDILAVGVTEKDMAKDVNSKFENPILKKLDAHLGGLLADVSSEEDFSGKPGQSTVLRLPGLGSKRVGLIGLGKSASTPSAFQSLGEAVAAAAKASQASSVAVVLASSESVSNESKLCSASAIAS 216          
BLAST of FC920594 vs. ExPASy Swiss-Prot
Match: AMPL2_SOLLC (Leucine aminopeptidase 2, chloroplastic OS=Solanum lycopersicum GN=LAPA2 PE=2 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 5.207e-49
Identity = 103/170 (60.59%), Postives = 124/170 (72.94%), Query Frame = 2
Query:  140 PLLFCRGKLRMAHSIARATLGLTKPAQIDPLKISFAAKEVDVVEWKGDILAVGVTEKDMGKDDNSKFQNSILKKLDAQLGGLLSEASSEEDFTGKAGQSTVIRLPGIGSKRVGLIGLGQSASRAGDFRSLGESXXXXXXXXXXXXXXXXLASSDGLSDESKLTAASAVAS 649
            PL   R K RMAHSIAR TLGLT   Q D  KISFAAKE+D+VEWKGDIL VG TEKD+ +D NSKFQN +L+KLD++L GLLSEASSEEDF+GKAGQST++RLPG+GSKR+ L+GLG   S    +R LGE+                LAS+DGLS E KL++ASA+ +
Sbjct:   36 PLCSRRAK-RMAHSIARDTLGLTHTNQSDAPKISFAAKEIDLVEWKGDILTVGATEKDLARDGNSKFQNPLLQKLDSKLSGLLSEASSEEDFSGKAGQSTILRLPGLGSKRIALVGLGSPTSSTAAYRCLGEAAAAAAKSAQASNIAIALASTDGLSAELKLSSASAITT 204          
BLAST of FC920594 vs. ExPASy Swiss-Prot
Match: AMPL1_ARATH (Leucine aminopeptidase 1 OS=Arabidopsis thaliana GN=PM25 PE=1 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.016e-44
Identity = 98/160 (61.25%), Postives = 115/160 (71.88%), Query Frame = 2
Query:  170 MAHSIARATLGLTKPAQIDPLKISFAAKEVDVVEWKGDILAVGVTEKDMGKDDNSKFQNSILKKLDAQLGGLLSEASSEEDFTGKAGQSTVIRLPGIGSKRVGLIGLGQSASRAGDFRSLGESXXXXXXXXXXXXXXXXLASSDGLSDESKLTAASAVAS 649
            MAH     TLGLT+P   +P KISF AKE+DV+EWKGDIL VGVTEKD+ KD NSKF+N IL K+DA L GLL++ SSEEDFTGK GQSTV+RLPG+GSKR+ LIGLGQS S    F SLGE+                LASS  +SDESKL++ SA+AS
Sbjct:    1 MAH-----TLGLTQPNSTEPHKISFTAKEIDVIEWKGDILVVGVTEKDLAKDGNSKFENPILSKVDAHLSGLLAQVSSEEDFTGKPGQSTVLRLPGLGSKRIALIGLGQSVSSPVAFHSLGEAVATVSKASQSTSAAIVLASS--VSDESKLSSVSALAS 153          
BLAST of FC920594 vs. ExPASy Swiss-Prot
Match: AMPL2_ORYSJ (Leucine aminopeptidase 2, chloroplastic OS=Oryza sativa subsp. japonica GN=Os02g0794700 PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 8.052e-42
Identity = 93/169 (55.03%), Postives = 117/169 (69.23%), Query Frame = 2
Query:  161 KLRMAHSIARAT-----LGLTKPAQIDPLKISFAAKEVDVVEWKGDILAVGVTEKDMGKDDNSKFQNSILKKLDAQLGGLLSEASSEEDFTGKAGQSTVIRLPGIGSKRVGLIGLGQSA-SRAGDFRSLGESXXXXXXXXXXXXXXXXLASSDGLSDESKLTAASAVAS 649
            + RM H+ A A      LGLTKP  ++P ++SFAAK+V+  EWKGDILA+ VTE D+ K  +SKF+N++LKKLD QLGGLLSEAS+EEDFTGKAGQS V+RLPG G KRVGLIGLGQ+A S     + +GES                 AS  G+ ++ KLTAA+A+AS
Sbjct:   64 RARMGHTAAAAAAAGPALGLTKPNAVEPPQVSFAAKDVEFSEWKGDILAIAVTENDLVKGSDSKFENAVLKKLDGQLGGLLSEASAEEDFTGKAGQSVVLRLPGQGFKRVGLIGLGQNAPSTTTACKGIGESVASVAKSAQASSAAIVFASVGGIQEDFKLTAAAAIAS 232          
BLAST of FC920594 vs. ExPASy Swiss-Prot
Match: AMPL_SOLTU (Leucine aminopeptidase, chloroplastic OS=Solanum tuberosum GN=LAP PE=2 SV=2)

HSP 1 Score: 164.466 bits (415), Expect = 4.418e-40
Identity = 89/170 (52.35%), Postives = 117/170 (68.82%), Query Frame = 2
Query:  140 PLLFCRGKLRMAHSIARATLGLTKPAQIDPLKISFAAKEVDVVEWKGDILAVGVTEKDMGKDDNSKFQNSILKKLDAQLGGLLSEASSEEDFTGKAGQSTVIRLPGIGSKRVGLIGLGQSASRAGDFRSLGESXXXXXXXXXXXXXXXXLASSDGLSDESKLTAASAVAS 649
            PL   R K R+ H IA  TLGLT+P + D  KIS  AK+ DVV+W+GD+LA+G TE D+ +DDNSKF+N +L++LD++L GLLS ASSEEDF+GK+GQS  +RLPG    R+ L+GLG SAS    + SLGE+                LAS+DGLS ESK+ +ASA+A+
Sbjct:   41 PLCSRRSK-RIVHCIAGDTLGLTRPNESDAPKISIGAKDTDVVQWQGDLLAIGATENDLARDDNSKFKNPLLQRLDSKLNGLLSAASSEEDFSGKSGQSINLRLPG---GRITLVGLGSSASSPTSYHSLGEAAAAAAKSAQARNIAVSLASTDGLSAESKINSASAIAT 206          
BLAST of FC920594 vs. ExPASy Swiss-Prot
Match: AMPL1_SOLLC (Leucine aminopeptidase 1, chloroplastic OS=Solanum lycopersicum GN=LAPA1 PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 8.333e-39
Identity = 87/173 (50.29%), Postives = 116/173 (67.05%), Query Frame = 2
Query:  131 PPPPLLFCRGKLRMAHSIARATLGLTKPAQIDPLKISFAAKEVDVVEWKGDILAVGVTEKDMGKDDNSKFQNSILKKLDAQLGGLLSEASSEEDFTGKAGQSTVIRLPGIGSKRVGLIGLGQSASRAGDFRSLGESXXXXXXXXXXXXXXXXLASSDGLSDESKLTAASAVAS 649
            P  PL   R K R+ H IA  TLGLT+P + D  KIS  AK+  VV+W+GD+LA+G TE DM +D+NSKF+N +L++LD++L GLLS ASSEEDF+GK+GQS  +R PG    R+ L+GLG SAS    + SLG++                LAS+DGLS ESK+ +ASA+A+
Sbjct:   38 PVTPLCSKRSK-RIVHCIAGDTLGLTRPNESDAPKISIGAKDTAVVQWQGDLLAIGATENDMARDENSKFKNPLLQQLDSELNGLLSAASSEEDFSGKSGQSVNLRFPG---GRITLVGLGSSASSPTSYHSLGQAAAAAAKSSQARNIAVALASTDGLSAESKINSASAIAT 206          
BLAST of FC920594 vs. ExPASy Swiss-Prot
Match: AMPL1_ORYSJ (Putative leucine aminopeptidase 1 OS=Oryza sativa subsp. japonica GN=Os12g0434400 PE=3 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 9.889e-24
Identity = 73/158 (46.20%), Postives = 96/158 (60.76%), Query Frame = 2
Query:  212 PAQIDPLKISFAAKEVDVVEWKGDILAVGVTEKDMGK--DDNSKFQN--SILKKLDAQLGGLLSEASSEEDFTGKAGQSTVIRLPGI----GSKRVGLIGLGQS-ASRAGDFRSLGESXXXXXXXXXXXXXXXXLASSDG---LSDESKLTAASAVAS 649
            P  +DP +ISFAAK++D+ EW+GDILAV VTE D+ K    +S+F N  + L KLD +LGGLLSEAS+EE+F G+AGQS  +RLP      G KRV L+G+G +  S A   RS GE+                LAS        ++ +L AA+AVAS
Sbjct:    2 PNVVDPPQISFAAKDMDLTEWEGDILAVLVTETDVSKATSSSSRFTNAAAALAKLDGELGGLLSEASAEEEFAGRAGQSVALRLPTAPGLHGFKRVCLVGVGNNMPSSAAACRSTGETIAAVAKSAQARSAAVALASPPPGWVQGEDLRLNAAAAVAS 159          
The following BLAST results are available for this feature:
BLAST of FC920594 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
AMPL2_ARATH7.266e-5163.10Leucine aminopeptidase 2, chloroplastic OS=Arabido... [more]
AMPL3_ARATH1.239e-5065.00Leucine aminopeptidase 3, chloroplastic OS=Arabido... [more]
AMPL2_SOLLC5.207e-4960.59Leucine aminopeptidase 2, chloroplastic OS=Solanum... [more]
AMPL1_ARATH1.016e-4461.25Leucine aminopeptidase 1 OS=Arabidopsis thaliana G... [more]
AMPL2_ORYSJ8.052e-4255.03Leucine aminopeptidase 2, chloroplastic OS=Oryza s... [more]
AMPL_SOLTU4.418e-4052.35Leucine aminopeptidase, chloroplastic OS=Solanum t... [more]
AMPL1_SOLLC8.333e-3950.29Leucine aminopeptidase 1, chloroplastic OS=Solanum... [more]
AMPL1_ORYSJ9.889e-2446.20Putative leucine aminopeptidase 1 OS=Oryza sativa ... [more]
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Properties
Property NameValue
Genbank descriptionC32010E02EF RVDevelop1 Citrus clementina cDNA clone C32010E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920594 ID=FC920594; Name=FC920594; organism=Citrus clementina; type=EST; length=650bp
GATGTCCGCCATTGTCGTATCTTCGACGACTTGCCTCTCTTGGTCTTCTT
CACCATCATCGTCTTCTTTGTTATTCTCGAAATTAGGATTAGGATCTGCA
GCTGCTTTTAGACGTTATTGTGCGCCGTCACCACCACCACCCTTGTTGTT
TTGTAGAGGAAAGCTCAGGATGGCTCACTCTATTGCTCGTGCCACTCTTG
GCCTCACTAAGCCTGCTCAAATCGACCCTCTCAAGATCTCTTTTGCCGCA
AAAGAGGTTGATGTGGTGGAATGGAAAGGTGATATACTTGCAGTGGGTGT
CACAGAGAAAGACATGGGCAAGGATGATAATTCAAAATTCCAGAACTCAA
TTTTGAAAAAGCTAGATGCCCAATTGGGCGGTCTTTTATCTGAAGCTTCT
TCTGAGGAGGATTTCACTGGAAAAGCTGGCCAGTCAACTGTTATTAGACT
CCCTGGCATTGGCTCCAAAAGGGTAGGCTTGATTGGTCTAGGCCAGTCAG
CTTCAAGGGCCGGGGACTTTCGCAGTCTTGGAGAGTCTGTTGCTGCGGCT
GCAAAGGCTGCTCAAGCCAGCAACGTTGCTGTTGTGCTTGCCTCTTCTGA
CGGTCTCTCAGATGAATCAAAGCTTACTGCTGCTTCGGCAGTGGCATCTG
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