FC920596

Overview
NameFC920596
Unique NameFC920596
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length668
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11915 contig Ccv1_Contig11915:840..1507. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920596 vs. ExPASy Swiss-Prot
Match: FCSB_DICDI (Fatty acyl-CoA synthetase B OS=Dictyostelium discoideum GN=fcsB PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.175e-35
Identity = 79/221 (35.75%), Postives = 129/221 (58.37%), Query Frame = 1
Query:    1 VLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWQGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVESRLESVPEMGYDA 663
            ++T++ + + V +V     V      + D ++S+LP AH+ ++++     H G +IG + GD+  ++ +++ L PT+F GVPRV++RI T +  +IS   AL + LF  AYN K  +++ G        +LD + FSKI++A GG+++ +LSG+APL    E FLRV     + QGYG +E C G      D    +GT+G P  + E +L  VPE+GYD+
Sbjct:  262 MITHKNLTSVVCAVSDFIKVY-----DTDVHYSYLPYAHVLERVVILAAFHFGAAIGIFSGDISNILVEVKLLSPTLFIGVPRVFERIKTNVFKEISKKPALLRTLFNGAYNLKYLSIQHGFKLPIIEKVLDLVFFSKIKQALGGKVRVILSGSAPLSFDTEVFLRVVMCCCVLQGYGASEGCGGDACKRLD-DESVGTIGPPFASNEIKLVDVPELGYDS 476          
BLAST of FC920596 vs. ExPASy Swiss-Prot
Match: ACSL1_RAT (Long-chain-fatty-acid--CoA ligase 1 OS=Rattus norvegicus GN=Acsl1 PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.756e-31
Identity = 74/198 (37.37%), Postives = 118/198 (59.60%), Query Frame = 1
Query:   70 VCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWQGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVESRLESVPEMGYDA 663
            + S ED   SFLPLAH+++ ++E   +  G  IGF+QGD+R LM+D++ L+PT+F  VPR+ +R++  I  + ++  ++ + L +FA   K   ++ G+ +N +  L D L+F KI+ + GG+++ M++GAAP+   V  FLR   G    +GYG TE  +GC  SL   +   G VG PM     +L  V +M Y A
Sbjct:  310 IASPEDVLISFLPLAHMFETVVECVMLCHGAKIGFFQGDIRLLMDDLKVLQPTIFPVVPRLLNRMFDRIFGQANT--SVKRWLLDFASKRKEAELRSGIVRNNS--LWDKLIFHKIQSSLGGKVRLMITGAAPVSATVLTFLRAALGCQFYEGYGQTECTAGCCLSLPGDWT-AGHVGAPMPCNYIKLVDVEDMNYQA 502          
BLAST of FC920596 vs. ExPASy Swiss-Prot
Match: ACSL1_MOUSE (Long-chain-fatty-acid--CoA ligase 1 OS=Mus musculus GN=Acsl1 PE=1 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.294e-31
Identity = 74/196 (37.76%), Postives = 118/196 (60.20%), Query Frame = 1
Query:   70 VCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWQGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVESRLESVPEMGY 657
            + S +D   SFLPLAH+++ ++E   +  G  IGF+QGD+R LM+D++ L+PT+F  VPR+ +R++  I  + ++  +L + L +FA   K  +++ G+ +N +  L D L+F KI+ + GG+++ M++GAAP+   V  FLR   G    +GYG TE  +GC  SL   +   G VG PM     +L  V EM Y
Sbjct:  310 IASTDDVLISFLPLAHMFETVVECVMLCHGAKIGFFQGDIRLLMDDLKVLQPTIFPVVPRLLNRMFDRIFGQANT--SLKRWLLDFASKRKEADVRSGIVRNNS--LWDKLIFHKIQSSLGGKVRLMITGAAPVSATVLTFLRTALGCQFYEGYGQTECTAGCCLSLPGDWT-AGHVGAPMPCNYVKLVDVEEMNY 500          
BLAST of FC920596 vs. ExPASy Swiss-Prot
Match: ACSL1_HUMAN (Long-chain-fatty-acid--CoA ligase 1 OS=Homo sapiens GN=ACSL1 PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 8.717e-31
Identity = 78/221 (35.29%), Postives = 130/221 (58.82%), Query Frame = 1
Query:    1 VLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWQGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVESRLESVPEMGYDA 663
            ++T++ IV++  +  +    T   C + DT  SFLPLAH++++++E   +  G  IGF+QGD+R LM+D++ L+PT+F  VPR+ +R++  I  + ++   L + L +FA   K   ++ G+ +N +  L D L+F K++ + GGR++ M++GAAP+   V  FLR   G    +GYG TE  +GC  ++   +   G VG PM     +L  V EM Y A
Sbjct:  287 MVTHRNIVSDCSAFVKATENTVNPCPD-DTLISFLPLAHMFERVVECVMLCHGAKIGFFQGDIRLLMDDLKVLQPTVFPVVPRLLNRMFDRIFGQANT--TLKRWLLDFASKRKEAELRSGIIRNNS--LWDRLIFHKVQSSLGGRVRLMVTGAAPVSATVLTFLRAALGCQFYEGYGQTECTAGCCLTMPGDWT-AGHVGAPMPCNLIKLVDVEEMNYMA 501          
BLAST of FC920596 vs. ExPASy Swiss-Prot
Match: FCSA_DICDI (Fatty acyl-CoA synthetase A OS=Dictyostelium discoideum GN=fcsA PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.942e-30
Identity = 78/219 (35.62%), Postives = 122/219 (55.71%), Query Frame = 1
Query:    1 VLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWQGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVESRLESVPEMGY 657
            +LT+  +V+EV   +  F   G +   ED + S+LPLAH +++ + +   + G  IGF+ G +  L  DIQ L+PT   G PRV+ R++  +   +++   L K LF +  N K   ++ G       P+ D LVFSK ++  GGR++ +LSG+APL   + EFLR     P+  GYGL+E+  G   +  +  N +G VG P++  E +L  VPEM Y
Sbjct:  248 MLTHTNMVSEVAGAN--FSPAGVI--PEDVHMSYLPLAHSFERAVVSLMCYVGGQIGFFSGLIPELFNDIQVLRPTFLCGAPRVWQRLHDKLWFTVNNDSWLKKFLFNWGLNSKQSALRLG----STTPIWDKLVFSKTKDRLGGRVKFILSGSAPLDPKLAEFLRACFCCPVVSGYGLSENVGGASVAYPE-DNNVGHVGPPLSACEMKLIDVPEMNY 457          
BLAST of FC920596 vs. ExPASy Swiss-Prot
Match: ACSL3_HUMAN (Long-chain-fatty-acid--CoA ligase 3 OS=Homo sapiens GN=ACSL3 PE=1 SV=3)

HSP 1 Score: 132.494 bits (332), Expect = 1.942e-30
Identity = 74/202 (36.63%), Postives = 103/202 (50.99%), Query Frame = 1
Query:   79 EEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWQGDV---------RYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVESRLESVPEMGY 657
            EED Y  +LPLAH+ +   E  C+  GC IG+              +    D   LKPT+ + VP + DRIY  + NK+S   +  + LF  AYNYK+  + KG    +  PL DS VF K+R   GG ++ +L G APL    + F+ +    P+ QGYGLTES      S    +N  G VG P+   E +L++  E GY
Sbjct:  320 EEDVYIGYLPLAHVLELSAELVCLSHGCRIGYSSPQTLADQSSKIKKGSKGDTSMLKPTLMAAVPEIMDRIYKNVMNKVSEMSSFQRNLFILAYNYKMEQISKG----RNTPLCDSFVFRKVRSLLGGNIRLLLCGGAPLSATTQRFMNICFCCPVGQGYGLTESAGAGTISEVWDYN-TGRVGAPLVCCEIKLKNWEEGGY 516          
BLAST of FC920596 vs. ExPASy Swiss-Prot
Match: ACSL5_HUMAN (Long-chain-fatty-acid--CoA ligase 5 OS=Homo sapiens GN=ACSL5 PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.313e-30
Identity = 69/192 (35.94%), Postives = 115/192 (59.90%), Query Frame = 1
Query:   82 EDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWQGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVESRLESVPEMGY 657
            +D   S+LPLAH++++I++      G  +GF+QGD+R L +D++ LKPT+F  VPR+ +RIY  + N+  +   L K L + A + K   ++KG+ ++ +    D L+F+KI+++ GGR++ +++GAAP+   V  F R   G  + + YG TE   GC  +L   +   G VGVP+     +LE V +M Y
Sbjct:  298 DDVAISYLPLAHMFERIVQAVVYSCGARVGFFQGDIRLLADDMKTLKPTLFPAVPRLLNRIYDKVQNEAKT--PLKKFLLKLAVSSKFKELQKGIIRHDS--FWDKLIFAKIQDSLGGRVRVIVTGAAPMSTSVMTFFRAAMGCQVYEAYGQTECTGGCTFTLPGDWTS-GHVGVPLACNYVKLEDVADMNY 484          
BLAST of FC920596 vs. ExPASy Swiss-Prot
Match: ACSL1_CAVPO (Long-chain-fatty-acid--CoA ligase 1 OS=Cavia porcellus GN=ACSL1 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.326e-30
Identity = 73/198 (36.87%), Postives = 118/198 (59.60%), Query Frame = 1
Query:   70 VCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWQGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVESRLESVPEMGYDA 663
            V +  D + SFLPLAH+Y+Q+++   +  G  IGF+QGD+R LM+D++ L+PT+F  VPR+ +R++  I  + ++   + + L +FA   K   ++ G+ +N +  + D L+F KI+ + GG+++ M++GAAP+   V  FLR   G    +GYG TE  +GC  S+   +   G VG PM     +L  V EM Y A
Sbjct:  309 VLNASDIHISFLPLAHMYEQLLQCVMLCHGAKIGFFQGDIRLLMDDLKALQPTIFPVVPRLLNRMFDRIFAQANT--TVKRWLLDFASKRKEAELRSGIIRNNS--VWDKLIFHKIQSSLGGKVRLMVTGAAPVSATVLTFLRAALGCQFYEGYGQTECTAGCSLSVPGDWT-AGHVGAPMPCNFIKLVDVEEMNYMA 501          
BLAST of FC920596 vs. ExPASy Swiss-Prot
Match: ACSL3_PONAB (Long-chain-fatty-acid--CoA ligase 3 OS=Pongo abelii GN=ACSL3 PE=2 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 7.380e-30
Identity = 73/202 (36.14%), Postives = 103/202 (50.99%), Query Frame = 1
Query:   79 EEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWQGDV---------RYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVESRLESVPEMGY 657
            EED Y  +LPLAH+ +   E  C+  GC IG+              +    D   LKPT+ + VP + DRIY  + NK+S   +  + LF  AYNYK+  + KG    +  PL +S VF K+R   GG ++ +L G APL    + F+ +    P+ QGYGLTES      S    +N  G VG P+   E +L++  E GY
Sbjct:  320 EEDVYIGYLPLAHVLELSAELVCLSHGCRIGYSSPQTLADQSSKIKKGSKGDTSMLKPTLMAAVPEIMDRIYKNVMNKVSEMSSFQRNLFILAYNYKMEQISKG----RNTPLCNSFVFRKVRSLLGGNIRLLLCGGAPLSATTQRFMNICFCCPVGQGYGLTESAGAGTISEVWDYN-TGRVGAPLVCCEIKLKNWEEGGY 516          
BLAST of FC920596 vs. ExPASy Swiss-Prot
Match: ACSL4_HUMAN (Long-chain-fatty-acid--CoA ligase 4 OS=Homo sapiens GN=ACSL4 PE=1 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 9.638e-30
Identity = 76/202 (37.62%), Postives = 106/202 (52.48%), Query Frame = 1
Query:   82 EDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWQ----GDVRYLME-----DIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESC-SGCFTSLADVFNMIGTVGVPMTTVESRLESVPEMGY 657
            +DTY  +LPLAH+ +   E  C   GC IG+       D    ++     D   LKPT+ + VP + DRIY  + +K+     + K LF+  Y+YKL  +KKG      APL + L+F K++   GG ++ MLSG APL      F+ V    P+ QGYGLTESC +G  T + D     G VG P+   E +L+   E GY
Sbjct:  312 KDTYIGYLPLAHVLELTAEISCFTYGCRIGYSSPLTLSDQSSKIKKGSKGDCTVLKPTLMAAVPEIMDRIYKNVMSKVQEMNYIQKTLFKIGYDYKLEQIKKGYD----APLCNLLLFKKVKALLGGNVRMMLSGGAPLSPQTHRFMNVCFCCPIGQGYGLTESCGAGTVTEVTDY--TTGRVGAPLICCEIKLKDWQEGGY 507          
The following BLAST results are available for this feature:
BLAST of FC920596 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
FCSB_DICDI1.175e-3535.75Fatty acyl-CoA synthetase B OS=Dictyostelium disco... [more]
ACSL1_RAT1.756e-3137.37Long-chain-fatty-acid--CoA ligase 1 OS=Rattus norv... [more]
ACSL1_MOUSE2.294e-3137.76Long-chain-fatty-acid--CoA ligase 1 OS=Mus musculu... [more]
ACSL1_HUMAN8.717e-3135.29Long-chain-fatty-acid--CoA ligase 1 OS=Homo sapien... [more]
FCSA_DICDI1.942e-3035.62Fatty acyl-CoA synthetase A OS=Dictyostelium disco... [more]
ACSL3_HUMAN1.942e-3036.63Long-chain-fatty-acid--CoA ligase 3 OS=Homo sapien... [more]
ACSL5_HUMAN3.313e-3035.94Long-chain-fatty-acid--CoA ligase 5 OS=Homo sapien... [more]
ACSL1_CAVPO4.326e-3036.87Long-chain-fatty-acid--CoA ligase 1 OS=Cavia porce... [more]
ACSL3_PONAB7.380e-3036.14Long-chain-fatty-acid--CoA ligase 3 OS=Pongo abeli... [more]
ACSL4_HUMAN9.638e-3037.62Long-chain-fatty-acid--CoA ligase 4 OS=Homo sapien... [more]

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Properties
Property NameValue
Genbank descriptionC32010E05EF RVDevelop1 Citrus clementina cDNA clone C32010E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920596 ID=FC920596; Name=FC920596; organism=Citrus clementina; type=EST; length=668bp
GTGCTCACTAATCAGGCTATTGTAGCAGAAGTACTGAGTGTCGACCAAAT
GTTTGTGGTTACGGGCAAAGTGTGTTCAGAAGAGGATACATACTTCTCAT
TCCTTCCTTTGGCCCATATATATGATCAGATCATTGAAACTCATTGCATC
CACAAGGGTTGTTCAATAGGATTTTGGCAAGGCGATGTTCGGTATTTGAT
GGAGGACATCCAGGAACTGAAACCAACAATGTTTTCTGGGGTCCCTAGAG
TGTATGACCGTATATACACTGGAATATCCAATAAAATATCATCTGGAGGC
GCACTGTCAAAGAAATTGTTTGAATTTGCTTATAACTACAAGTTGGGAAA
TATGAAGAAGGGCATGCCACAAAACAAAGCAGCACCTCTCTTAGACAGTC
TCGTATTCAGTAAGATAAGGGAAGCTTTTGGAGGAAGACTCCAAGCCATG
TTATCTGGCGCAGCACCTTTGCCTATTCATGTGGAGGAGTTCCTACGGGT
CACTAGTGGTGCTCCTTTGACACAAGGATATGGTCTTACGGAAAGTTGTA
GTGGGTGTTTTACATCCCTAGCCGATGTATTTAATATGATTGGAACTGTT
GGTGTCCCTATGACAACTGTTGAAAGCAGGCTTGAGTCCGTGCCAGAGAT
GGGATACGATGCCCTTTC
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