FC920602

Overview
NameFC920602
Unique NameFC920602
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length744
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14167 contig Ccv1_Contig14167:1..744. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920602 vs. ExPASy Swiss-Prot
Match: RPG1_ARATH (Protein RUPTURED POLLEN GRAIN 1 OS=Arabidopsis thaliana GN=RPG1 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.393e-28
Identity = 67/190 (35.26%), Postives = 112/190 (58.95%), Query Frame = 3
Query:  177 MFDHHQWGVAFGILGNIISFLVYLAPVPTFYRIYRKKSTESFQSLPYLVALFSSMLWFYYAL--VKQNAFLLVTINCFGCVIETIYIILFITY-APKGSRNSTVKLFVSMNVGVFSLILLLTHF-LATDSTRILILGWICVAVSVSVFAAPLSIVAQVIRNKSVEFMPFILSFFLTLSAIMWFAYGLFQK 734
            M D  Q     G++GN+ISF ++ AP  TF+RI++KKS E F  +PY+  + + MLW +Y L  V +++ L+ TIN  G VIE  Y+ +++ Y   K +    +  F+++ V +   I+L+T F L  D  +   +G IC   +++++ AP   + +V++ KSVE+MPF+LS    ++A +W  Y L  K
Sbjct:    1 MVDAKQVRFIIGVIGNVISFGLFAAPAKTFWRIFKKKSVEEFSYVPYVATVMNCMLWVFYGLPVVHKDSILVSTINGVGLVIELFYVGVYLMYCGHKKNHRRNILGFLALEVILVVAIILITLFALKGDFVKQTFVGVICDVFNIAMYGAPSLAIIKVVKTKSVEYMPFLLSLVCFVNAGIWTTYSLIFK 190          
BLAST of FC920602 vs. ExPASy Swiss-Prot
Match: R1AP1_XENLA (RAG1-activating protein 1 homolog OS=Xenopus laevis GN=rag1ap1 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.008e-14
Identity = 45/155 (29.03%), Postives = 88/155 (56.77%), Query Frame = 3
Query:  282 KKSTESFQSLPYLVALFSSMLWFYYALVKQNAFLLVTINCFGCVIETIYIILFITYAPKGSRNSTVKLFVSMNVGVFSLILLL-----THFLATDSTRILILGWICVAVSVSVFAAPLSIVAQVIRNKSVEFMPFILSFFLTLSAIMWFAYGLFQ 731
            ++S E+ Q LP+L    +++ WFYY  +K +  L++ +N  G  ++++Y+  ++ Y+P+       + +V   V V   +LLL     T ++   ++R+  LG  C   ++S++ +PL+ +AQ+IR+KS + + F L+    L++  W  YGL Q
Sbjct:   32 QRSVENIQYLPFLTTDLNNLGWFYYGYLKGDGTLMI-VNVIGASLQSLYMGAYLLYSPE-------RRYVGSQVLVSLGVLLLGYCYFTLWILDLNSRLNQLGLFCSVFTISMYLSPLADLAQIIRSKSTKCLSFPLTVATFLTSSSWVLYGLVQ 178          
BLAST of FC920602 vs. ExPASy Swiss-Prot
Match: R1AP1_XENTR (RAG1-activating protein 1 homolog OS=Xenopus tropicalis GN=rag1ap1 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.537e-13
Identity = 44/150 (29.33%), Postives = 85/150 (56.67%), Query Frame = 3
Query:  282 KKSTESFQSLPYLVALFSSMLWFYYALVKQNAFLLVTINCFGCVIETIYIILFITYAPKGSRNSTVKLFVSMNVGVFSLILLLTHFLATDSTRILILGWICVAVSVSVFAAPLSIVAQVIRNKSVEFMPFILSFFLTLSAIMWFAYGLFQ 731
            K+S E+ Q LP+L    +++ WFYY  +K +  L++ +N  G  ++T+Y+  +I Y+ +  R    ++ VS+ V +F      T +    ++R+  LG  C   ++S++ +PL+ +AQ+I++KS + + F L+    L++  W  YG  Q
Sbjct:   32 KRSVENIQFLPFLTTDLNNLGWFYYGYLKGDGTLII-VNLIGASLQTLYMAAYILYSLE-RRYVVSQVLVSLGV-LFLAHCYFTLWTPDINSRLNQLGLFCSIFTISMYLSPLADLAQIIKSKSTKCLSFPLTVATFLTSTSWVLYGWVQ 178          
BLAST of FC920602 vs. ExPASy Swiss-Prot
Match: R1AP1_PAPAN (RAG1-activating protein 1 OS=Papio anubis GN=RAG1AP1 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.456e-12
Identity = 42/149 (28.19%), Postives = 81/149 (54.36%), Query Frame = 3
Query:  285 KSTESFQSLPYLVALFSSMLWFYYALVKQNAFLLVTINCFGCVIETIYIILFITYAPKGSRNSTVKLFVSMNVGVFSLILLLTHF---LATDSTRILILGWICVAVSVSVFAAPLSIVAQVIRNKSVEFMPFILSFFLTLSAIMWFAYG 722
            +S ++ Q LP+L    +++ W  Y  +K +  L+V +N  G  ++T+YI+ ++ Y P   R   V L  +  +GV  L+L   +F   +     R+ +LG  C   ++S++ +PL+ +A+VI+ KS + + + L+    L++  W  YG
Sbjct:   37 RSVDNVQFLPFLTTEVNNLGWLSYGALKGDRILIV-VNTVGAALQTLYILAYLHYCP---RKRVVLLQTATLLGV--LLLGYGYFWLLVPNPEARLQLLGLFCSVFTISMYLSPLADLAKVIQTKSTQCLSYPLTIATVLTSASWCLYG 179          
BLAST of FC920602 vs. ExPASy Swiss-Prot
Match: R1AP1_MOUSE (RAG1-activating protein 1 OS=Mus musculus GN=Rag1ap1 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.432e-12
Identity = 40/150 (26.67%), Postives = 80/150 (53.33%), Query Frame = 3
Query:  279 RKKSTESFQSLPYLVALFSSMLWFYYALVKQNAFLLVTINCFGCVIETIYIILFITYAPK--GSRNSTVKLFVSMNVGVFSLILLLTHFLATDSTRILILGWICVAVSVSVFAAPLSIVAQVIRNKSVEFMPFILSFFLTLSAIMWFAYG 722
            R +S ++ Q LP+L    +++ W  Y ++K +  L++ +N  G V++T+YI+ ++ Y+P+  G    T  L   + +G     LL+    A    R+  LG  C   ++S++ +PL+ +A++++ KS + + F L+      +  W  YG
Sbjct:   35 RTRSVDNIQFLPFLTTDVNNLSWLSYGVLKGDGTLII-VNSVGAVLQTLYILAYLHYSPQKHGVLLQTATLLAVLLLGYGYFWLLVPDLEA----RLQQLGLFCSVFTISMYLSPLADLAKIVQTKSTQRLSFSLTIATLFCSASWSIYG 179          
BLAST of FC920602 vs. ExPASy Swiss-Prot
Match: R1AP1_HUMAN (RAG1-activating protein 1 OS=Homo sapiens GN=RAG1AP1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.453e-11
Identity = 42/149 (28.19%), Postives = 80/149 (53.69%), Query Frame = 3
Query:  285 KSTESFQSLPYLVALFSSMLWFYYALVKQNAFLLVTINCFGCVIETIYIILFITYAPKGSRNSTVKLFVSMNVGVFSLILLLTHF---LATDSTRILILGWICVAVSVSVFAAPLSIVAQVIRNKSVEFMPFILSFFLTLSAIMWFAYG 722
            +S ++ Q LP+L    +++ W  Y  +K +  L+V +N  G  ++T+YI+ ++ Y P   R   V L  +  +GV  L+L   +F   +     R+  LG  C   ++S++ +PL+ +A+VI+ KS + + + L+    L++  W  YG
Sbjct:   37 RSVDNVQFLPFLTTEVNNLGWLSYGALKGDGILIV-VNTVGAALQTLYILAYLHYCP---RKRVVLLQTATLLGV--LLLGYGYFWLLVPNPEARLQQLGLFCSVFTISMYLSPLADLAKVIQTKSTQCLSYPLTIATLLTSASWCLYG 179          
The following BLAST results are available for this feature:
BLAST of FC920602 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
RPG1_ARATH8.393e-2835.26Protein RUPTURED POLLEN GRAIN 1 OS=Arabidopsis tha... [more]
R1AP1_XENLA9.008e-1429.03RAG1-activating protein 1 homolog OS=Xenopus laevi... [more]
R1AP1_XENTR1.537e-1329.33RAG1-activating protein 1 homolog OS=Xenopus tropi... [more]
R1AP1_PAPAN6.456e-1228.19RAG1-activating protein 1 OS=Papio anubis GN=RAG1A... [more]
R1AP1_MOUSE8.432e-1226.67RAG1-activating protein 1 OS=Mus musculus GN=Rag1a... [more]
R1AP1_HUMAN2.453e-1128.19RAG1-activating protein 1 OS=Homo sapiens GN=RAG1A... [more]
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Properties
Property NameValue
Genbank descriptionC32010F02EF RVDevelop1 Citrus clementina cDNA clone C32010F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920602 ID=FC920602; Name=FC920602; organism=Citrus clementina; type=EST; length=744bp
GATCCTCGAGTTGCTTGCTTTGCATGTGTGATTGAGGGTGCTTGGCCTCT
TTTAAGAAATTGAGCTAGGGTTTCATAGTATCTTCTTTGAGATCGAGGCC
CTTGCTTGATTTTCTGCTCAAATTTCGTTGTTGAGTGTTCAAAATTCATT
TTTTGTTTGCTAAGAAAATGGCCATAATGTTCGATCACCATCAATGGGGA
GTTGCATTTGGCATCTTAGGTAACATTATCTCGTTCCTCGTGTACCTGGC
TCCGGTGCCAACATTTTACCGAATTTACAGAAAAAAATCAACAGAGAGCT
TCCAGTCTCTGCCTTATCTGGTAGCATTGTTCAGCTCAATGCTGTGGTTC
TACTATGCGCTTGTGAAACAAAATGCTTTCCTTCTCGTTACCATCAACTG
CTTTGGATGTGTCATTGAGACTATTTACATCATCCTCTTCATCACTTATG
CCCCAAAAGGCAGCCGGAACTCAACTGTCAAACTATTTGTTTCGATGAAC
GTTGGAGTGTTCTCTTTGATTCTTCTTCTCACACACTTTCTTGCAACCGA
TTCAACTCGGATCCTAATTCTTGGTTGGATTTGTGTTGCCGTTTCTGTTA
GTGTCTTCGCAGCACCCTTAAGCATTGTTGCACAAGTTATCCGAAACAAA
AGTGTTGAGTTCATGCCATTCATCCTATCATTTTTTCTTACGCTGAGTGC
AATTATGTGGTTCGCTTACGGTCTTTTTCAGAAGACATATGCGT
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