FC920605

Overview
NameFC920605
Unique NameFC920605
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length358
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920605 vs. ExPASy Swiss-Prot
Match: DUS2L_HUMAN (tRNA-dihydrouridine synthase 2-like OS=Homo sapiens GN=DUS2L PE=1 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.079e-33
Identity = 68/114 (59.65%), Postives = 88/114 (77.19%), Query Frame = 1
Query:    1 VVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAININMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPLTCKIRLSKSSQDTVELARQIEKTGVSALAVHGR 342
            VVFRTC +E+N VVFQMGTSDA RAL  A++V  DVA I++NMGCPK +S  GGMGAALLS P+ I  IL+ L +    P+TCKIR+  S +DT+ L ++IE+TG++A+AVHGR
Sbjct:   72 VVFRTCEREQNRVVFQMGTSDAERALAVARLVENDVAGIDVNMGCPKQYSTKGGMGAALLSDPDKIEKILSTLVKGTRRPVTCKIRILPSLEDTLSLVKRIERTGIAAIAVHGR 185          
BLAST of FC920605 vs. ExPASy Swiss-Prot
Match: DUS2L_MOUSE (tRNA-dihydrouridine synthase 2-like OS=Mus musculus GN=Dus2l PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 1.409e-33
Identity = 68/114 (59.65%), Postives = 88/114 (77.19%), Query Frame = 1
Query:    1 VVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAININMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPLTCKIRLSKSSQDTVELARQIEKTGVSALAVHGR 342
            VVFRTC +E++ VVFQMGTSDA RAL  A++V  DVA I++NMGCPK +S  GGMGAALLS P+ I  IL+ L +    P+TCKIR+  S +DT+ L ++IE+TG+SA+AVHGR
Sbjct:   72 VVFRTCEREQSRVVFQMGTSDAERALAVARLVENDVAGIDVNMGCPKEYSTKGGMGAALLSDPDKIEKILSTLVKGTHRPVTCKIRILPSLEDTLNLVKRIERTGISAIAVHGR 185          
BLAST of FC920605 vs. ExPASy Swiss-Prot
Match: DUS2_SCHPO (tRNA-dihydrouridine synthase 2 OS=Schizosaccharomyces pombe GN=dus2 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.865e-20
Identity = 51/118 (43.22%), Postives = 73/118 (61.86%), Query Frame = 1
Query:    1 VVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAININMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVP----LTCKIRLSKSSQDTVELARQIEKTGVSALAVHGR 342
            V+FR    E N ++FQ+G++    A+ AAK+V  DVA I++N GCPK FSV  GMGA LL   + +  IL  L   +  P    ++CKIRL ++ +DT++L  +I  TGV A+ VH R
Sbjct:   72 VLFRVHPLEANRLIFQLGSASPELAVEAAKLVANDVAGIDLNCGCPKHFSVHAGMGAGLLKNQDRLVSILDALVNEIGKPYKISISCKIRLLETKEDTLKLVERICDTGVRAITVHCR 189          
BLAST of FC920605 vs. ExPASy Swiss-Prot
Match: DUS2_YEAST (tRNA-dihydrouridine synthase 2 OS=Saccharomyces cerevisiae GN=SMM1 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.118e-17
Identity = 49/119 (41.18%), Postives = 75/119 (63.03%), Query Frame = 1
Query:    1 VVFRTCHQ-ERNHVVFQMGTSDAVRALTAAKMVCKDVAAININMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL----DVPLTCKIRLSKSSQDTVELARQIEKTGVSALAVHGR 342
            +VFRT  + E + ++FQ+G++    A  AA  V  DV+ I+IN GCPK FS+  GMG+ALL  P+ +  IL  L +N+      P++ KIRL  + QDT++L +++  TG++ L VH R
Sbjct:   72 LVFRTYPKLESSKLIFQIGSASPALATQAALKVINDVSGIDINAGCPKHFSIHSGMGSALLRTPDTLCLILKELVKNVGNPHSKPISVKIRLLDTKQDTLQLVKRLCATGITNLTVHCR 190          
BLAST of FC920605 vs. ExPASy Swiss-Prot
Match: DUS4L_MOUSE (tRNA-dihydrouridine synthase 4-like OS=Mus musculus GN=Dus4l PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.951e-15
Identity = 41/113 (36.28%), Postives = 68/113 (60.18%), Query Frame = 1
Query:   13 TCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAININMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVP---LTCKIRLSKSSQDTVELARQIEKTGVSALAVHGR 342
            T +Q    ++ Q   +DA     AA +VC     I+IN GCP+ ++++ G GA L++KPEL+HD++  ++  ++ P   ++ KIR+      T++L R+ E TGVS + VHGR
Sbjct:   76 TTNQGDCPLIVQFAANDARLLSDAALLVCPYANGIDINCGCPQRWAMADGYGACLINKPELVHDMVRQVRNRVESPRFSVSIKIRIHDDLARTIDLCRKAEATGVSWITVHGR 188          
BLAST of FC920605 vs. ExPASy Swiss-Prot
Match: DUS4L_HUMAN (tRNA-dihydrouridine synthase 4-like OS=Homo sapiens GN=DUS4L PE=2 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 1.121e-14
Identity = 40/113 (35.40%), Postives = 69/113 (61.06%), Query Frame = 1
Query:   13 TCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAININMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVP---LTCKIRLSKSSQDTVELARQIEKTGVSALAVHGR 342
            T +Q    ++ Q   +DA     AA++VC     I+IN GCP+ ++++ G GA L++KPEL+ D++  ++  ++ P   ++ KIR+    + TV+L ++ E TGVS + VHGR
Sbjct:   76 TTNQGDCPLIVQFAANDARLLSDAARIVCPYANGIDINCGCPQRWAMAEGYGACLINKPELVQDMVKQVRNQVETPGFSVSIKIRIHDDLKRTVDLCQKAEATGVSWITVHGR 188          
BLAST of FC920605 vs. ExPASy Swiss-Prot
Match: YQI2_CAEEL (Uncharacterized tRNA-dihydrouridine synthase-like protein C45G9.2 OS=Caenorhabditis elegans GN=C45G9.2 PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 1.619e-13
Identity = 41/105 (39.05%), Postives = 61/105 (58.10%), Query Frame = 1
Query:   37 VVFQMGTSDAVRALTAAKMVCKDVAAININMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL---DVPLTCKIRLSKSSQDTVELARQIEKTGVSALAVHGR 342
            ++ Q  T D      AA+MV K    +++N GCPK    S G G+ALLSKPEL+ D++   +  +   D  ++ KIR++   + TV+L R+ E  GV+ L VHGR
Sbjct:   51 LIVQFATDDPFVLSEAAEMVYKCSTGVDLNCGCPKHDVRSKGFGSALLSKPELLADMVRQTRARIPDPDFSVSLKIRINHDIEKTVDLCRKAEAAGVTHLTVHGR 155          
BLAST of FC920605 vs. ExPASy Swiss-Prot
Match: DUS1_SCHPO (tRNA-dihydrouridine synthase 1 OS=Schizosaccharomyces pombe GN=dus1 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.115e-13
Identity = 42/111 (37.84%), Postives = 61/111 (54.95%), Query Frame = 1
Query:   10 RTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAININMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPLTCKIRLSKSSQDTVELARQIEKTGVSALAVHGR 342
            RT  +ER  ++ Q   +D    L AAK+      A+++N+GCP+  +  G  G+ L     LI  I+T L   L +P+T KIR+    Q T++ A+ I K G S LAVHGR
Sbjct:   69 RTIPEERP-LIIQFCGNDPEIMLKAAKIAAPYCDAVDVNLGCPQGIAKKGKYGSFLQENWNLIESIITKLHTELSIPVTAKIRIFPDPQKTLDYAKMILKAGASILAVHGR 178          
BLAST of FC920605 vs. ExPASy Swiss-Prot
Match: DUS1_YEAST (tRNA-dihydrouridine synthase 1 OS=Saccharomyces cerevisiae GN=DUS1 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.050e-12
Identity = 35/102 (34.31%), Postives = 59/102 (57.84%), Query Frame = 1
Query:   37 VVFQMGTSDAVRALTAAKMVCKDVAAININMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPLTCKIRLSKSSQDTVELARQIEKTGVSALAVHGR 342
            +V Q   +D    L AAK+V     A+++N+GCP+  +  G  G+ L+ + +LIH+++  L +NL VP+T KIR+    + ++  A+ +   G   L VHGR
Sbjct:   89 LVVQFCANDPEYLLAAAKLVEDKCDAVDLNLGCPQGIAKKGHYGSFLMEEWDLIHNLINTLHKNLKVPVTAKIRIFDDCEKSLNYAKMVLDAGAQFLTVHGR 190          
BLAST of FC920605 vs. ExPASy Swiss-Prot
Match: DUS4_SCHPO (tRNA-dihydrouridine synthase 4 OS=Schizosaccharomyces pombe GN=dus4 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.338e-12
Identity = 38/104 (36.54%), Postives = 59/104 (56.73%), Query Frame = 1
Query:   37 VVFQMGTSDAVRALTAAKMVCKDVAAININMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPL--TCKIRLSKSSQDTVELARQIEKTGVSALAVHGR 342
            ++ Q G  D V    AA++V   V  I IN GCP+++++  G+G+ALL +PE +H ++  +K  L        KIR++K    T  L + IEK+G   + VHGR
Sbjct:   76 LILQFGVDDPVILEKAAQLVGPYVDGIGINCGCPQTWAIQEGIGSALLDEPEKVHKLVRAVKSTLGESFCTEVKIRIAKDLNKTRHLMQVIEKSGADIITVHGR 179          
The following BLAST results are available for this feature:
BLAST of FC920605 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
DUS2L_HUMAN1.079e-3359.65tRNA-dihydrouridine synthase 2-like OS=Homo sapien... [more]
DUS2L_MOUSE1.409e-3359.65tRNA-dihydrouridine synthase 2-like OS=Mus musculu... [more]
DUS2_SCHPO8.865e-2043.22tRNA-dihydrouridine synthase 2 OS=Schizosaccharomy... [more]
DUS2_YEAST4.118e-1741.18tRNA-dihydrouridine synthase 2 OS=Saccharomyces ce... [more]
DUS4L_MOUSE2.951e-1536.28tRNA-dihydrouridine synthase 4-like OS=Mus musculu... [more]
DUS4L_HUMAN1.121e-1435.40tRNA-dihydrouridine synthase 4-like OS=Homo sapien... [more]
YQI2_CAEEL1.619e-1339.05Uncharacterized tRNA-dihydrouridine synthase-like ... [more]
DUS1_SCHPO2.115e-1337.84tRNA-dihydrouridine synthase 1 OS=Schizosaccharomy... [more]
DUS1_YEAST1.050e-1234.31tRNA-dihydrouridine synthase 1 OS=Saccharomyces ce... [more]
DUS4_SCHPO2.338e-1236.54tRNA-dihydrouridine synthase 4 OS=Schizosaccharomy... [more]

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Properties
Property NameValue
Genbank descriptionC32010F06EF RVDevelop1 Citrus clementina cDNA clone C32010F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920605 ID=FC920605; Name=FC920605; organism=Citrus clementina; type=EST; length=358bp
GTTGTATTTAGAACTTGTCATCAAGAAAGAAACCACGTAGTGTTTCAAAT
GGGAACTTCTGATGCTGTGAGGGCTTTAACTGCTGCCAAGATGGTGTGTA
AAGATGTTGCTGCAATAAATATTAATATGGGCTGCCCCAAATCGTTTTCT
GTGAGTGGAGGCATGGGTGCTGCACTGTTGTCTAAGCCGGAGCTCATTCA
TGATATTTTGACAATGCTAAAGAGGAACTTGGATGTGCCACTGACATGCA
AGATTCGACTTTCTAAATCGTCTCAGGATACTGTAGAACTAGCTAGGCAA
ATCGAGAAAACAGGAGTTTCTGCTCTCGCTGTCCATGGAAGGCCATCTCT
AAAAAAGT
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