FC920615

Overview
NameFC920615
Unique NameFC920615
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length684
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6703 contig Ccv1_Contig6703:1..682. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920615 vs. ExPASy Swiss-Prot
Match: SERC_ARATH (Phosphoserine aminotransferase, chloroplastic OS=Arabidopsis thaliana GN=At4g35630 PE=2 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 1.820e-63
Identity = 119/182 (65.38%), Postives = 145/182 (79.67%), Query Frame = 3
Query:  144 KNNLASFTNLKK---INFFNTKRAISVTCSAASAPTQDRTAAQIQSGQEDRVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVIWSGKAEKYTKIPNFD 680
            K++  SF +L K   +NF +  + ++V C A++   QD   +    G ++RVFNFAAGPA LPE VLLKAQ++LYNWRGSGMSVMEMSHRGKEF SII+KAESDLR LL IPQEYSVLFLQGGATTQFAA+PLNLC  +D VD++VTGSW DKA KEA+K+C   VIWSGK+EKYTK+P+F+
Sbjct:   23 KSSSQSFLHLSKPNTVNFVSKTKPVAVRCVASTTQVQDGVRSG-SVGSQERVFNFAAGPATLPENVLLKAQADLYNWRGSGMSVMEMSHRGKEFLSIIQKAESDLRQLLEIPQEYSVLFLQGGATTQFAALPLNLCKSDDTVDFVVTGSWGDKAVKEAKKYCKTNVIWSGKSEKYTKVPSFE 203          
BLAST of FC920615 vs. ExPASy Swiss-Prot
Match: SERC_SPIOL (Phosphoserine aminotransferase, chloroplastic OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.221e-59
Identity = 114/182 (62.64%), Postives = 131/182 (71.98%), Query Frame = 3
Query:  135 PLNKNNLASFTNLKKINFFNTKRAISVTCSAASAPTQDRTAAQIQSGQEDRVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVIWSGKAEKYTKIPNFD 680
            P N       T+   +NF        +TCSA    T   T  +I    E+RVFNFAAGPA LPE VL KAQSEL NWRGSGMSVMEMSHRGKEF SII+KAE+DLR LLNIP +Y+VLFLQGGA+TQF+A+PLNLCTP+  VDYIVTGSW DKA KEA K+     IWSGK++ Y +IPNFD
Sbjct:   18 PFNPQQNCQQTHFLPLNFKIRNPISRITCSATPTATAVSTTTKIDQRSEERVFNFAAGPAVLPENVLQKAQSELLNWRGSGMSVMEMSHRGKEFTSIIDKAEADLRTLLNIPSDYTVLFLQGGASTQFSAIPLNLCTPDSAVDYIVTGSWGDKAAKEAAKYAAVSSIWSGKSDNYVRIPNFD 199          
BLAST of FC920615 vs. ExPASy Swiss-Prot
Match: SERC_BURCJ (Phosphoserine aminotransferase OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=serC PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.235e-36
Identity = 74/130 (56.92%), Postives = 94/130 (72.31%), Query Frame = 3
Query:  285 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVIWSGKAEK-YTKIP 671
            RVFNF+AGPA +PE+VL +A  E+ +W GSGMSVMEMSHRGKEF SI E A +DLR LL +P  + +LFLQGG   + A VP+NL    +  D++VTGSWS K+F EA+KFC P +  SGK E  +T+ P
Sbjct:    2 RVFNFSAGPAAMPEEVLRQAADEMLDWHGSGMSVMEMSHRGKEFMSIHEAALTDLRDLLGVPASHRILFLQGGGIAENAIVPMNLLGARNTADFVVTGSWSQKSFGEAKKFCTPHLAASGKTENGFTRAP 131          
BLAST of FC920615 vs. ExPASy Swiss-Prot
Match: SERC_BURM1 (Phosphoserine aminotransferase OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=serC PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.225e-36
Identity = 74/132 (56.06%), Postives = 95/132 (71.97%), Query Frame = 3
Query:  285 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVIWSGKAEK-YTKIPNF 677
            RVFNF+AGPA LPE+VL +A  E+ +W GSGMSVMEMSHRGKEF SI E A +DLR LL++P  + VLFLQGG   + A VP+NL       D++VTGSWS K+F EA+K+C P +  +GK +  +T+ P F
Sbjct:    2 RVFNFSAGPAALPEEVLRQAADEMLDWHGSGMSVMEMSHRGKEFMSIHEAALADLRELLDVPASHRVLFLQGGGIAENAIVPMNLLGSRKTADFVVTGSWSQKSFNEAKKYCTPHLAATGKTDAGFTRAPAF 133          
BLAST of FC920615 vs. ExPASy Swiss-Prot
Match: SERC_BURVG (Phosphoserine aminotransferase OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=serC PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 7.207e-36
Identity = 74/130 (56.92%), Postives = 95/130 (73.08%), Query Frame = 3
Query:  285 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVIWSGK-AEKYTKIP 671
            RVFNF+AGPA LPE+VL +A  E+ +W GSGMSVMEMSHRGKEF SI E A +DLR LL++P  + +LFLQGG   + A VP+NL       D++VTGSWS K+F EA+K+C P +  SGK A+ +T+ P
Sbjct:    2 RVFNFSAGPAALPEEVLRQAADEMLDWHGSGMSVMEMSHRGKEFMSIHETALADLRELLDVPASHRILFLQGGGIAENAIVPMNLLGWRKSADFVVTGSWSQKSFNEAKKYCTPHLAASGKTADGFTRAP 131          
BLAST of FC920615 vs. ExPASy Swiss-Prot
Match: SERC_BURCC (Phosphoserine aminotransferase OS=Burkholderia cenocepacia (strain MC0-3) GN=serC PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 7.207e-36
Identity = 74/130 (56.92%), Postives = 93/130 (71.54%), Query Frame = 3
Query:  285 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVIWSGKAEK-YTKIP 671
            RVFNF+AGPA +PE+VL +A  E+ +W GSGMSVMEMSHRGKEF SI E A +DLR LL +P  + +LFLQGG   + A VP+NL       D++VTGSWS K+F EA+KFC P +  SGK E  +T+ P
Sbjct:    2 RVFNFSAGPAAMPEEVLRQAADEMLDWHGSGMSVMEMSHRGKEFMSIHEAALTDLRDLLGVPASHRILFLQGGGIAENAIVPMNLLGARKTADFVVTGSWSQKSFGEAKKFCTPHLAASGKTEAGFTRAP 131          
BLAST of FC920615 vs. ExPASy Swiss-Prot
Match: SERC_PSEE4 (Phosphoserine aminotransferase OS=Pseudomonas entomophila (strain L48) GN=serC PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.229e-35
Identity = 73/129 (56.59%), Postives = 91/129 (70.54%), Query Frame = 3
Query:  285 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVIWSGKAEKYTKIP 671
            R FNF AGPA LP+ VL +AQ+E+ +WRG G+SVMEMSHR  ++ +I EKAE DLR LL++P  Y VLFLQGGA+ QFA +PLNL   N   DY+ TG WS KA +EA++F +  V  S KA  Y  IP
Sbjct:    4 RAFNFCAGPAALPDAVLQRAQAEMLDWRGKGLSVMEMSHRSDDYVAIAEKAEQDLRDLLSVPSNYKVLFLQGGASQQFAEIPLNLLPENGVADYVETGIWSKKAIEEARRFGSVNVAASAKAYDYLAIP 132          
BLAST of FC920615 vs. ExPASy Swiss-Prot
Match: SERC_BURCH (Phosphoserine aminotransferase OS=Burkholderia cenocepacia (strain HI2424) GN=serC PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.229e-35
Identity = 74/130 (56.92%), Postives = 93/130 (71.54%), Query Frame = 3
Query:  285 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVIWSGKAEK-YTKIP 671
            RVFNF+AGPA +PE+VL +A  E+ +W GSGMSVMEMSHRGKEF SI E A +DLR LL +P  + +LFLQGG   + A VP+NL       D++VTGSWS K+F EA+KFC P +  SGK E  +T+ P
Sbjct:    2 RVFNFSAGPAAMPEEVLRQAADEMLDWHGSGMSVMEMSHRGKEFMSIHEAALTDLRDLLGVPASHRILFLQGGGIAENAIVPMNLLGARKTADFVVTGSWSQKSFGEAKKFCAPHLAASGKTEAGFTRAP 131          
BLAST of FC920615 vs. ExPASy Swiss-Prot
Match: SERC_BURCA (Phosphoserine aminotransferase OS=Burkholderia cenocepacia (strain AU 1054) GN=serC PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.229e-35
Identity = 74/130 (56.92%), Postives = 93/130 (71.54%), Query Frame = 3
Query:  285 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVIWSGKAEK-YTKIP 671
            RVFNF+AGPA +PE+VL +A  E+ +W GSGMSVMEMSHRGKEF SI E A +DLR LL +P  + +LFLQGG   + A VP+NL       D++VTGSWS K+F EA+KFC P +  SGK E  +T+ P
Sbjct:    2 RVFNFSAGPAAMPEEVLRQAADEMLDWHGSGMSVMEMSHRGKEFMSIHEAALTDLRDLLGVPASHRILFLQGGGIAENAIVPMNLLGARKTADFVVTGSWSQKSFGEAKKFCAPHLAASGKTEAGFTRAP 131          
BLAST of FC920615 vs. ExPASy Swiss-Prot
Match: SERC_PSEPK (Phosphoserine aminotransferase OS=Pseudomonas putida (strain KT2440) GN=serC PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.606e-35
Identity = 73/129 (56.59%), Postives = 90/129 (69.77%), Query Frame = 3
Query:  285 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVIWSGKAEKYTKIP 671
            R FNF AGPA LP+ VL +AQ+E+ +WRG G+SVMEMSHR  ++ +I EKAE DLR LL++P  Y VLFLQGGA+ QFA +PLNL   N   DYI TG WS KA +EA++F N  V  + K   Y  IP
Sbjct:    4 RAFNFCAGPAALPDAVLQRAQAEMLDWRGKGLSVMEMSHRSDDYVAIAEKAEQDLRDLLSVPSNYKVLFLQGGASQQFAEIPLNLLPENGTADYIETGIWSKKAIEEARRFGNVNVAATAKPYDYLAIP 132          
The following BLAST results are available for this feature:
BLAST of FC920615 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 255
Match NameE-valueIdentityDescription
SERC_ARATH1.820e-6365.38Phosphoserine aminotransferase, chloroplastic OS=A... [more]
SERC_SPIOL1.221e-5962.64Phosphoserine aminotransferase, chloroplastic OS=S... [more]
SERC_BURCJ3.235e-3656.92Phosphoserine aminotransferase OS=Burkholderia cep... [more]
SERC_BURM14.225e-3656.06Phosphoserine aminotransferase OS=Burkholderia mul... [more]
SERC_BURVG7.207e-3656.92Phosphoserine aminotransferase OS=Burkholderia vie... [more]
SERC_BURCC7.207e-3656.92Phosphoserine aminotransferase OS=Burkholderia cen... [more]
SERC_PSEE41.229e-3556.59Phosphoserine aminotransferase OS=Pseudomonas ento... [more]
SERC_BURCH1.229e-3556.92Phosphoserine aminotransferase OS=Burkholderia cen... [more]
SERC_BURCA1.229e-3556.92Phosphoserine aminotransferase OS=Burkholderia cen... [more]
SERC_PSEPK1.606e-3556.59Phosphoserine aminotransferase OS=Pseudomonas puti... [more]

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Properties
Property NameValue
Genbank descriptionC32010G08EF RVDevelop1 Citrus clementina cDNA clone C32010G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920615 ID=FC920615; Name=FC920615; organism=Citrus clementina; type=EST; length=684bp
AAAAGCCAAAAAAGAAAAAAAAAAGGAAAAGAGAAATAAAGGCACTTGTC
TCTCTTTCAACTAGCAGCTGCTAAGCCATGGCAACGACGACATCATCACC
TCACTCACTGTTTCTCCAGAACCGTAATAGCCACCCACTCAATAAAAACA
ATCTCGCATCTTTCACCAACCTTAAAAAGATCAATTTTTTTAACACCAAA
AGAGCCATTTCAGTCACCTGCTCCGCCGCATCAGCACCAACCCAAGATCG
AACGGCGGCCCAGATCCAATCCGGGCAAGAAGACCGGGTCTTCAACTTCG
CTGCGGGCCCCGCTAATCTCCCGGAGAAAGTTCTACTCAAGGCCCAATCG
GAGCTTTACAACTGGCGCGGATCTGGCATGAGCGTGATGGAAATGAGCCA
TAGAGGTAAAGAATTCAAGTCCATTATTGAAAAAGCTGAATCGGATCTTA
GAGCCCTCTTGAATATTCCCCAAGAATATTCTGTTTTGTTCTTGCAAGGC
GGCGCTACGACACAGTTCGCCGCCGTTCCATTGAATTTGTGTACACCTAA
TGACCCGGTCGATTATATCGTCACCGGGTCGTGGAGTGACAAAGCTTTTA
AAGAAGCGCAAAAATTTTGCAACCCACAAGTGATTTGGTCTGGAAAAGCT
GAAAAGTACACAAAGATTCCAAATTTTGATGCTT
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