FC920630

Overview
NameFC920630
Unique NameFC920630
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length675
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6531 contig Ccv1_Contig6531:879..1553. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920630 vs. ExPASy Swiss-Prot
Match: NEP1_NEPGR (Aspartic proteinase nepenthesin-1 OS=Nepenthes gracilis GN=nep1 PE=1 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 8.578e-34
Identity = 83/226 (36.73%), Postives = 119/226 (52.65%), Query Frame = 3
Query:    6 CRNNTCLYEVSYGDGSYTVGDFVTETVTLGSASVDNIAIGCGHNNEGLFV-XXXXXXXXXXXXXSFPSQINASTFSYCLVDRDSGSTSTLEFDS---SLPPNAVTAPLLRNHELDTFYYLGLTGISVGGDLLPISETAFKID-ESGNGGIIVDSGTAVTRLQTETYNALRDAFVRGTRALSPTDGVALFDTCYDF-SSRSSVEVPTVSFHFPEGKVLPLPAKKFFI 665
            C NN C Y   YGDGS T G   TET+T GS S+ NI  GCG NN+G                 S PSQ++ + FSYC+    S + S L   S   S+   +    L+++ ++ TFYY+ L G+SVG   LPI  +AF ++  +G GGII+DSGT +T      Y ++R  F+            + FD C+   S  S++++PT   HF +G  L LP++ +FI
Sbjct:  163 CSNNFCQYTYGYGDGSETQGSMGTETLTFGSVSIPNITFGCGENNQGFGQGNGAGLVGMGRGPLSLPSQLDVTKFSYCMTPIGSSTPSNLLLGSLANSVTAGSPNTTLIQSSQIPTFYYITLNGLSVGSTRLPIDPSAFALNSNNGTGGIIIDSGTTLTYFVNNAYQSVRQEFISQINLPVVNGSSSGFDLCFQTPSDPSNLQIPTFVMHF-DGGDLELPSENYFI 387          
BLAST of FC920630 vs. ExPASy Swiss-Prot
Match: NEP2_NEPGR (Aspartic proteinase nepenthesin-2 OS=Nepenthes gracilis GN=nep2 PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.257e-33
Identity = 84/225 (37.33%), Postives = 117/225 (52.00%), Query Frame = 3
Query:    6 CRNNTCLYEVSYGDGSYTVGDFVTETVTLGSASVDNIAIGCGHNNEGLFVXXXXXXXXXXXXX-SFPSQINASTFSYCLVDRDSGSTSTLEFDSS---LPPNAVTAPLLRNHELDTFYYLGLTGISVGGDLLPISETAFKIDESGNGGIIVDSGTAVTRLQTETYNALRDAFVRGTRALSPTDGVALFDTCYDF-SSRSSVEVPTVSFHFPEGKVLPLPAKKFFI 665
            C NN C Y   YGDGS T G   TET T  ++SV NIA GCG +N+G                 S PSQ+    FSYC+    S S STL   S+   +P  + +  L+ +    T+YY+ L GI+VGGD L I  + F++ + G GG+I+DSGT +T L  + YNA+  AF       +  +  +   TC+   S  S+V+VP +S  F +G VL L  +   I
Sbjct:  164 CNNNECQYTYGYGDGSTTQGYMATETFTFETSSVPNIAFGCGEDNQGFGQGNGAGLIGMGWGPLSLPSQLGVGQFSYCMTSYGSSSPSTLALGSAASGVPEGSPSTTLIHSSLNPTYYYITLQGITVGGDNLGIPSSTFQLQDDGTGGMIIDSGTTLTYLPQDAYNAVAQAFTDQINLPTVDESSSGLSTCFQQPSDGSTVQVPEISMQF-DGGVLNLGEQNILI 387          
The following BLAST results are available for this feature:
BLAST of FC920630 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
NEP1_NEPGR8.578e-3436.73Aspartic proteinase nepenthesin-1 OS=Nepenthes gra... [more]
NEP2_NEPGR4.257e-3337.33Aspartic proteinase nepenthesin-2 OS=Nepenthes gra... [more]
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Properties
Property NameValue
Genbank descriptionC32011A05EF RVDevelop1 Citrus clementina cDNA clone C32011A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920630 ID=FC920630; Name=FC920630; organism=Citrus clementina; type=EST; length=675bp
CCGAGTGCCGCAACAACACGTGCCTCTACGAGGTCTCGTACGGTGACGGC
TCCTACACTGTCGGAGATTTCGTTACCGAGACCGTCACTCTCGGCTCGGC
TTCCGTTGATAACATAGCCATCGGCTGCGGACACAATAACGAGGGGCTGT
TTGTCGGAGCTGCCGGCTTGCTTGGACTCGGCGGCGGCTTGCTTTCGTTT
CCCTCTCAGATTAATGCTTCCACTTTCTCTTACTGTCTCGTGGACCGTGA
CTCTGGCTCGACCTCGACTCTTGAGTTTGACTCATCGTTACCTCCTAACG
CTGTCACTGCTCCGTTACTCCGCAACCACGAACTTGACACTTTTTATTAC
CTCGGTTTAACGGGAATCAGTGTTGGCGGCGACTTACTGCCGATTTCCGA
GACGGCTTTCAAGATAGACGAGTCAGGTAACGGGGGGATAATCGTTGATT
CTGGAACGGCCGTTACGAGGCTGCAAACGGAGACGTATAACGCTTTGCGC
GATGCATTCGTTAGGGGAACGCGAGCATTGTCGCCAACTGACGGCGTGGC
GTTGTTTGACACGTGCTATGACTTCTCGTCGCGGAGTAGCGTCGAGGTCC
CCACGGTGTCGTTTCATTTTCCCGAGGGAAAAGTTTTACCGTTACCGGCG
AAGAAATTTTTTATACCGGTTGACT
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