FC920633

Overview
NameFC920633
Unique NameFC920633
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length664
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13293 contig Ccv1_Contig13293:192..855. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920633 vs. ExPASy Swiss-Prot
Match: SYE_ARATH (Glutamyl-tRNA synthetase OS=Arabidopsis thaliana GN=At5g64050 PE=2 SV=1)

HSP 1 Score: 301.982 bits (772), Expect = 1.817e-81
Identity = 149/211 (70.62%), Postives = 175/211 (82.94%), Query Frame = 3
Query:    3 SGAIFDSTKLRWMNGQHLRAIPSNELTKLIGERWKSTGILTESKGPFVDEAIQLLKDGIDLVPDSDKALSNLLSYPLRDTLTSSGGKSIVEDNLSEVAARLLAAYDGGELLAALEEGHAGWQKWVNGFGKMLKRKGKSLFMPLRVLLTGKLHGPDMGASILLIHKAGTHGIVSPRAEFLTLDERFKMLRQVDWEALKKDQPA-LESAAATA 632
            SGAIFDSTKLRWMNGQHLRA+P+ +LTKL+GERWKS GILTES+G FV+EA++LLKDGI+LV DSDK L NLLSYPL  TL S   K  VED L EVAA L+AAYD GE+ +ALEEG   WQKWV  FGK LKRKGKSLFMPLRVLLTGKLHGP+MG SI+LI+KAG+ GIV P+A F++++ERFK+LR++DWEAL KD+   LES A  +
Sbjct:  359 SGAIFDSTKLRWMNGQHLRALPNEKLTKLVGERWKSAGILTESEGSFVNEAVELLKDGIELVTDSDKVLLNLLSYPLHATLASPEAKPAVEDKLHEVAASLIAAYDSGEIPSALEEGQGAWQKWVKAFGKSLKRKGKSLFMPLRVLLTGKLHGPEMGTSIVLIYKAGSPGIVVPQAGFVSMEERFKILREIDWEALNKDESVPLESTATVS 569          
BLAST of FC920633 vs. ExPASy Swiss-Prot
Match: SYE_TOBAC (Glutamyl-tRNA synthetase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 290.812 bits (743), Expect = 4.188e-78
Identity = 142/209 (67.94%), Postives = 169/209 (80.86%), Query Frame = 3
Query:    3 SGAIFDSTKLRWMNGQHLRAIPSNELTKLIGERWKSTGILTESKGPFVDEAIQLLKDGIDLVPDSDKALSNLLSYPLRDTLTSSGGKSIVEDNLSEVAARLLAAYDGGELLAALEEGHAGWQKWVNGFGKMLKRKGKSLFMPLRVLLTGKLHGPDMGASILLIHKAGTHGIVSPRAEFLTLDERFKMLRQVDWEALKKDQPALESAAAT 629
            SGAIFDSTKLRWMNGQHLR++PS EL ++IGERWK  GI TES+G F+ +A+ LLKDGIDL+ DS+KALS+LLSYPL +TL S+ GK I+ED +SEVA  LLAAYD GEL  AL EG  GWQKW   FGK+LKRKGKSLFMPLRVLLTGKLHGPD+GA+ +L++KAGT G V P+A F+T DERFK+LR+V WE+   D P L + A T
Sbjct:  361 SGAIFDSTKLRWMNGQHLRSLPSEELNRIIGERWKDAGIATESQGIFIQDAVLLLKDGIDLITDSEKALSSLLSYPLYETLASAEGKPILEDGVSEVAKSLLAAYDSGELSGALAEGQPGWQKWAKNFGKLLKRKGKSLFMPLRVLLTGKLHGPDIGATTVLLYKAGTSGSVVPQAGFVTFDERFKILREVQWESFSTDVP-LSAGAVT 568          
BLAST of FC920633 vs. ExPASy Swiss-Prot
Match: SYE_HORVU (Glutamyl-tRNA synthetase OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 271.166 bits (692), Expect = 3.434e-72
Identity = 131/212 (61.79%), Postives = 171/212 (80.66%), Query Frame = 3
Query:    3 SGAIFDSTKLRWMNGQHLRAIPSNELTKLIGERWKSTGILTESKGPFVDEAIQLLKDGIDLVPDSDKALSNLLSYPLRDTLTSSGGKSIVEDNLSEVAARLLAAYDGGELLAALEEGHAGWQKWVNGFGKMLKRKGKSLFMPLRVLLTGKLHGPDMGASILLIHKAGTHGIVSPRAEFLTLDERFKMLRQVDWEALKKDQPA-LESAAATAN 635
            SGA+FD+TKL+WMNGQHLR++PS+ L K   ++W+STGIL ES+  F  EA +LLK+GIDL+ D+D AL  LLSYPL +TL+S   KS+VED LSEVA+ L++AYD GEL  AL EGH GW+KWV  FGK  KRKGKSLFMPLRVLLTGKLHGP M ++++L+HKAGT G V+P++ F++LDERFK+L++V+WE+L+K Q + +ESA   A+
Sbjct:  349 SGAVFDATKLKWMNGQHLRSLPSDLLIKDFEDQWRSTGILLESESGFAKEAAELLKEGIDLITDADAALCKLLSYPLHETLSSDEAKSVVEDKLSEVASGLISAYDSGELDQALAEGHDGWKKWVKSFGKTHKRKGKSLFMPLRVLLTGKLHGPAMDSTVILVHKAGTSGAVAPQSGFVSLDERFKILKEVNWESLQKQQESPVESAVPAAS 560          
The following BLAST results are available for this feature:
BLAST of FC920633 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
SYE_ARATH1.817e-8170.62Glutamyl-tRNA synthetase OS=Arabidopsis thaliana G... [more]
SYE_TOBAC4.188e-7867.94Glutamyl-tRNA synthetase OS=Nicotiana tabacum PE=2... [more]
SYE_HORVU3.434e-7261.79Glutamyl-tRNA synthetase OS=Hordeum vulgare PE=2 S... [more]
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Properties
Property NameValue
Genbank descriptionC32011A08EF RVDevelop1 Citrus clementina cDNA clone C32011A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920633 ID=FC920633; Name=FC920633; organism=Citrus clementina; type=EST; length=664bp
AAAGCGGAGCCATTTTTGATTCTACTAAGTTAAGGTGGATGAATGGTCAG
CATTTGAGGGCAATTCCTTCAAACGAGTTGACCAAATTGATTGGTGAACG
CTGGAAGAGCACTGGTATCCTCACAGAATCAAAAGGGCCATTTGTAGATG
AGGCAATTCAGCTGCTCAAGGATGGGATTGACTTGGTACCAGACTCAGAT
AAAGCACTTTCAAACTTGCTGTCTTATCCTTTACGTGATACTTTGACCAG
CTCTGGAGGTAAAAGTATAGTAGAAGATAATCTATCTGAAGTTGCAGCTC
GCCTCTTAGCTGCTTATGATGGTGGTGAACTACTTGCTGCACTTGAAGAA
GGCCATGCTGGTTGGCAGAAGTGGGTGAATGGCTTTGGGAAAATGCTTAA
ACGCAAGGGCAAATCACTATTCATGCCCCTAAGGGTGTTGCTAACTGGAA
AACTCCATGGCCCTGATATGGGTGCCAGCATTCTGTTAATCCATAAAGCT
GGAACCCATGGCATTGTTTCTCCCCGGGCTGAATTTCTGACATTGGACGA
GAGGTTTAAAATGCTGAGACAAGTTGATTGGGAAGCATTAAAGAAGGATC
AACCTGCCCTAGAGTCTGCTGCTGCTACAGCAAATTGAGAATCCAAACAT
TTTGACCGGGCCAT
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