FC920637

Overview
NameFC920637
Unique NameFC920637
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length730
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14172 contig Ccv1_Contig14172:1..730. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920637 vs. ExPASy Swiss-Prot
Match: SIN3_ARATH (Paired amphipathic helix protein Sin3 OS=Arabidopsis thaliana GN=SIN3 PE=1 SV=2)

HSP 1 Score: 189.504 bits (480), Expect = 1.578e-47
Identity = 115/255 (45.10%), Postives = 141/255 (55.29%), Query Frame = 1
Query:    1 EKEEGELSPNGDFEEDNFGVYGDAAVKTLPKAKHGVESRQYQSKNEKG------LQHQVVXXXXXXXXXXXXXXXXXVAGDDASGSESAGXXXXXXXXXXXXXXXXXXXXGKAESEGEADGMAYQHFVGGDCMSLPMSERFLLSVKPLAKFVPATSVEERKD------CRVFYGNDDFYVLFRLHQTLYERIQWAKMNTTGAEMKRRTSKEASCSDLYARFMTALHNLLDGSIDNAKFEDECRAIIGNQSYVLFT 729
            E+EEGELSPNGDFEEDNF VY     +T  KA     +     ++ +G       + +                       D SG+ES G                     K ESEGEA+ MA  H    +  +LP+S RFLL VKPL K+VP+      KD       +VFYGND FYVLFRLH+ LYERI  AK+N++  E K RTS   + +D YARFMTAL+NLLDG+ DNAKFED+CRAIIG QSY+LFT
Sbjct:  914 EREEGELSPNGDFEEDNFAVYAKTDFETFSKANDSTGNNISGDRSREGEPSCLETRAENDAEGDENAARSSEDSRNEYENGDVSGTESGGGEDPEDDLDNN---------NKGESEGEAECMADAHDAEENGSALPVSARFLLHVKPLVKYVPSAIALHDKDKDSLKNSQVFYGNDSFYVLFRLHRILYERILSAKVNSSSPEGKWRTSNTKNPTDSYARFMTALYNLLDGTSDNAKFEDDCRAIIGTQSYILFT 1159          
The following BLAST results are available for this feature:
BLAST of FC920637 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
SIN3_ARATH1.578e-4745.10Paired amphipathic helix protein Sin3 OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionC32011A12EF RVDevelop1 Citrus clementina cDNA clone C32011A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920637 ID=FC920637; Name=FC920637; organism=Citrus clementina; type=EST; length=730bp
GAAAAAGAAGAGGGTGAGTTATCCCCCAATGGTGATTTTGAGGAGGATAA
TTTTGGTGTCTATGGAGATGCTGCTGTGAAGACCTTGCCTAAGGCAAAGC
ATGGTGTTGAAAGCAGGCAATATCAGTCTAAAAATGAAAAAGGATTACAA
CATCAGGTTGTTGGAGGAGAAAATGATGCAGATGCTGATGATGAGGACAG
TGGAAATGCTTCTGTGGCTGGTGATGATGCCTCAGGAAGTGAGTCTGCAG
GTGATGAGTACTCCCGCGAGGAGCATGAAGAGGAGGAAGATGTAGAACGA
GATGATGTTGACGGCAAGGCTGAGAGTGAAGGCGAAGCAGATGGAATGGC
TTATCAACACTTTGTGGGTGGAGATTGCATGTCATTGCCTATGTCTGAAC
GTTTTCTTTTGTCTGTCAAGCCTCTTGCAAAGTTTGTGCCTGCAACCTCA
GTTGAAGAAAGGAAAGATTGTAGGGTATTTTATGGAAATGACGACTTTTA
TGTGCTTTTCAGGCTTCATCAAACTCTATATGAAAGAATTCAATGGGCAA
AAATGAATACAACAGGTGCTGAAATGAAACGGAGAACTTCTAAGGAGGCC
AGTTGCTCAGATCTCTATGCCAGATTTATGACTGCACTACACAATTTGCT
TGACGGATCGATTGACAATGCGAAGTTTGAGGATGAGTGCCGAGCTATTA
TAGGNAATCAGTCATATGTGTTGTTTACCT
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