FC920642

Overview
NameFC920642
Unique NameFC920642
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920642_ssr48 microsatellite FC920642_ssr48:48..65. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC920642 vs. ExPASy Swiss-Prot
Match: IAA9_ARATH (Auxin-responsive protein IAA9 OS=Arabidopsis thaliana GN=IAA9 PE=1 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 8.299e-43
Identity = 93/150 (62.00%), Postives = 110/150 (73.33%), Query Frame = 1
Query:  226 EEEGQSNVSLMASSP-SDCISQN-VSGLQERNYLGLXXXXXXXXXXXXXLPVDNKNKLNLKATELRLGLPGSESPEREPDLSLLSSGKLDEKPLFPLLPSKDGICPGSQKNVVSGNKRGFSDTMDRFSEVKSSVYTEKNWMFSVGPDSES 669
            EEE QSNVS+ +SSP S+CIS+N + GL+E NYLGL             L  D+K  ++LKATEL LGLPGS+SP R+ +L+LLS  KLDEKP FPLLPSKD IC  SQKN  SGNKRGFSDTMD+F+E KSSVYTEKNWMF     ++S
Sbjct:    4 EEELQSNVSVASSSPTSNCISRNTLGGLKEHNYLGLSDCSSVGSSTLSPLAEDDKATISLKATELTLGLPGSQSPARDTELNLLSPAKLDEKPFFPLLPSKDEICSSSQKNNASGNKRGFSDTMDQFAEAKSSVYTEKNWMFPEAAATQS 153          
BLAST of FC920642 vs. ExPASy Swiss-Prot
Match: IAA8_ARATH (Auxin-responsive protein IAA8 OS=Arabidopsis thaliana GN=IAA8 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.279e-23
Identity = 65/108 (60.19%), Postives = 69/108 (63.89%), Query Frame = 1
Query:  301 LQERNYLGLXXXXXXXXXXXXXLPVDNKNKLNLKATELRLGLPGSESPEREPDLSLLSSGKLDEKPLFPLLPSKD-GICPGSQKNVVSGNKRGFSDTMDRFSEVKSSV 621
            L+ERNYLGL               V  K+ LN KATELRLGLP S+SPERE D  LLS    DEK LFPLLPSKD G      KNVVSGNKRGF+DT D FS VK SV
Sbjct:   19 LKERNYLGLSDCSSVDSSTIPN--VVGKSNLNFKATELRLGLPESQSPERETDFGLLSPRTPDEKLLFPLLPSKDNGSATTGHKNVVSGNKRGFADTWDEFSGVKGSV 124          
The following BLAST results are available for this feature:
BLAST of FC920642 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
IAA9_ARATH8.299e-4362.00Auxin-responsive protein IAA9 OS=Arabidopsis thali... [more]
IAA8_ARATH3.279e-2360.19Auxin-responsive protein IAA8 OS=Arabidopsis thali... [more]
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Properties
Property NameValue
Genbank descriptionC32011B07EF RVDevelop1 Citrus clementina cDNA clone C32011B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920642 ID=FC920642; Name=FC920642; organism=Citrus clementina; type=EST; length=698bp
GGGTGCAAAGCTTTTGTTGCTTCTCTGCTTAATGGAAGGACCTTAAACTC
TCTCTCTCTCTCTCTCACACCTTTGACCCTGTTTTTCTTTCTATACAGTT
CGTGCATTTACTTGTAAAATTTCTTTAGGTACAATCGATCTTCTCTACTT
CATTTGCTCCGCAACGGCTGCTCAGTTACTGGGCAATTTTTAAGTCTGAT
GTCTCCACCGCTGCTCCTCGGCGTTGAGGAGGAAGGGCAGAGCAATGTCT
CTTTAATGGCCTCTTCGCCTTCTGACTGTATCTCCCAAAACGTCTCTGGG
TTACAAGAACGGAACTATCTGGGTTTGTCAGACTGTTCCTCAGTTGACAG
TTCTGCAGCCTCCAGCTTGCCAGTGGACAACAAGAACAAACTGAATTTAA
AGGCTACAGAGTTGAGGCTTGGTCTTCCTGGATCTGAATCCCCCGAGAGA
GAACCGGACCTTTCTTTACTTAGTTCAGGGAAGCTTGATGAGAAACCACT
GTTTCCATTGCTTCCTTCTAAGGATGGAATCTGCCCTGGATCACAGAAGA
ATGTTGTTTCCGGAAATAAAAGAGGATTCTCGGACACCATGGATCGATTT
TCAGAGGTGAAAAGTTCTGTCTATACTGAAAAGAATTGGATGTTCTCGGT
TGGGCCTGATTCTGAATCTCCACATCAGTGGGACAAGGGAGTTTCCTG
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