FC920643

Overview
NameFC920643
Unique NameFC920643
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5236 contig Ccv1_Contig5236:22..728. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920643 vs. ExPASy Swiss-Prot
Match: SKI19_ARATH (F-box protein SKIP19 OS=Arabidopsis thaliana GN=SKIP19 PE=1 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.399e-53
Identity = 110/214 (51.40%), Postives = 137/214 (64.02%), Query Frame = 1
Query:   64 ESCDWTQLPADVTSTILSKIGAIDVLTSAQRVCSSWLRICHDPAMWRNIDMHNLGDLWDMDHDLEKMCRHAVDRSNGQLLSINIEYFGTDELLQYIAXXXXXXXXXXXVSCYNISDQGFCEAIKGFPXXXXXXXXXXXXXQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDGCPHLESLD 705
            ES +WT+LP ++TS IL ++GAI++L +AQ+VC SW R+C DP+MWR IDMHNLGDL DMD++LE MCRHAVDRS G L+ I I YFGT +LL YIA           + C  I+D GF EA+   P              E+L  VG  C  +++ KLN      P+ E DDDA AIAE M  LRHLQL GN L++ GL AILD C +LE LD
Sbjct:   15 ESTNWTELPPELTSAILHRLGAIEILENAQKVCRSWRRVCKDPSMWRKIDMHNLGDLDDMDYNLEIMCRHAVDRSQGGLVDIGIWYFGTVDLLNYIAHRSSNLRSLRLIRCSQITDDGFVEAVVKLPLEELELSYCSFSV-ESLRVVGQCCLNMKTLKLNKH----PQKENDDDALAIAETMPKLRHLQLCGNGLSDTGLNAILDNCSNLEHLD 223          
BLAST of FC920643 vs. ExPASy Swiss-Prot
Match: FBL23_ARATH (Putative F-box/LRR-repeat protein 23 OS=Arabidopsis thaliana GN=FBL23 PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 6.499e-51
Identity = 103/216 (47.69%), Postives = 136/216 (62.96%), Query Frame = 1
Query:   73 DWTQLPADVTSTILSKIGAIDVLTSAQRVCSSWLRICHDPAMWRNIDMHNLGDLWDMDHDLEKMCRHAVDRSNGQLLSINIEYFGTDELLQYIAXXXXXXXXXXXVSCYNISDQGFCEAIKGFPXXXXXXXXXXXXXQEALEAVGSLCPLLRSFKLNNRGHRCPKI-----ECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDGCPHLESLD 705
            +W +LP+ +TS+IL ++GAI++L +AQ+VC  W R+C DP+MWR ID+ N  D     +DLE MCRHAVDRS+G L+ I I Y+GT++L+ YIA           V C+ I+D+G  +A+   P              E+L  +G  CP L++ KLN    R P+I       DD+AKAIAE+M  LRHLQL GN LTN GL AILDGCPHLE LD
Sbjct:  180 NWAELPSKLTSSILLRLGAIEILQNAQKVCKPWHRVCKDPSMWRKIDIDNRNDRAAFKYDLESMCRHAVDRSHGGLIEIEIWYYGTNDLIMYIADRSSNLKSLGLVRCFPITDEGVAKAVSKVPLLEYLEVSYCLFSGESLRDIGRSCPNLKTLKLN----RAPEIMFSNSGFDDNAKAIAESMPELRHLQLLGNGLTNKGLNAILDGCPHLEHLD 391          
BLAST of FC920643 vs. ExPASy Swiss-Prot
Match: FB221_ARATH (Putative F-box protein At4g05480 OS=Arabidopsis thaliana GN=At4g05480 PE=4 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.895e-42
Identity = 94/223 (42.15%), Postives = 126/223 (56.50%), Query Frame = 1
Query:   58 EQESCDWTQLPADVTSTILSKIGAIDVLTSAQRVCSSWLRICHDPAMWRNIDMHNLGDLWDMDHDLEKMCRHAVDRSNGQLLSINIEYFGTDELLQYIAXXXXXXXXXXXVSCYNISDQGFCEAIKGFPXXXXXXXXXXXXXQEALEAVGSLCPLLRSFKLNNRGHRC----------PKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDGCPHLE 696
            ++E  +W  LP ++T++IL ++   D+L +A+++C +W RIC DP+MWR I   NL D    + D E MCRH VD S G LL INIE+F +D LL YI                 ++++G    I+  P              + L+A+G  CP L++ KLN+ G             P +ECDDDA AIAE+M  LRHLQL GN LTN GL AILDGCPHLE
Sbjct:   34 DEERINWVDLPPELTTSILLRLSVTDILDNARKLCRAWRRICKDPSMWRKI---NLRDCLMYEFDFESMCRHIVDLSQGGLLEINIEHFVSDSLLSYIVDRSCNLKSLGISIYEPMTNKGVMNGIEKLPLLETLVIFHSSIKLD-LKAIGHACPQLKTLKLNSLGSELAHDISQVGYIPLLECDDDALAIAESMPKLRHLQLMGNGLTNTGLNAILDGCPHLE 252          
BLAST of FC920643 vs. ExPASy Swiss-Prot
Match: FBL9_ARATH (Putative F-box/LRR-repeat protein 9 OS=Arabidopsis thaliana GN=FBL9 PE=4 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.358e-40
Identity = 94/215 (43.72%), Postives = 124/215 (57.67%), Query Frame = 1
Query:   73 DWTQLPADVTSTILSKIGAIDVLTSAQRVCSSWLRICHDPAMWRNIDM---HNLGDLWDMDHDLEKMCRHAVDRSNGQLLSINIEYFGTDELLQYIAXXXXXXXXXXXVSCYNISDQGFCEAIKGFPXXXXXXXXXXXXXQE-ALEAVGSLCPLLRSFKLNNRGH-RCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDGCPHLESL 702
            +W +LP ++TS+IL ++GAI++L +AQRVC SW R+C DP+MWR ID+    NL +  ++ + +E +C  AVD S G LL INI+Y      L YIA           V C  +  +G  EA    P             +E  L+ VG  CP LR+ KLN  G  +C    CD  A AIAE M GLRHLQLF N L+  GL AIL+GCPHL++L
Sbjct:   20 NWAELPPELTSSILLRLGAIEILQNAQRVCKSWRRVCQDPSMWRKIDIRIKENLVNSVELFYVIEPLCCRAVDLSQGGLLEINIDYLVNTSFLNYIADRSSNLRRLGVVDCAPVLSRGVVEAAMKLPLLEELDITYKSSIREQELKVVGQSCPNLRTLKLNCTGDVKC----CDKVALAIAETMPGLRHLQLFRNGLSETGLNAILEGCPHLKNL 230          
BLAST of FC920643 vs. ExPASy Swiss-Prot
Match: FBL21_ARATH (Putative F-box/LRR-repeat protein 21 OS=Arabidopsis thaliana GN=FBL21 PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.169e-38
Identity = 95/231 (41.13%), Postives = 122/231 (52.81%), Query Frame = 1
Query:   61 QESCDWTQLPADVTSTILSKIGAIDVLTSAQRVCSSWLRICHDPAMWRNIDMHNLGDLWDMDHDLEKMCRHAVDRSNGQLLSINI-EYFGTDELLQYIAXXXXXXXXXXXVSCY-NISDQGFCEAIKGFPXXXXXXXXXXXXXQEALEAVGSLCPLLRSFKLNNRGHRCPK--------------IECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDGCPHLESLD 705
            +E  +W  LP ++T++IL ++   D+L +AQ+VC  W RIC DP+MWR I   N  D    + D   MCRH VD S G LL IN+ E+F +D LL YI              C+  ++  G   AI   P              + L+A+G  CP L++ KLN+ G   P               +ECDDDA AIAE+M  L HLQL  N LTN GL AILDGCPHLE LD
Sbjct:   41 KERRNWVDLPPELTTSILLRLSLTDILDNAQKVCKEWRRICKDPSMWRKI---NTRDCLMYNFDFVSMCRHIVDLSQGGLLEINVDEHFLSDSLLSYITDRNLRSLGLGM--CFPRVTKLGVVNAIAKIPLLETLEVTHSCIKLD-LKAIGHACPQLKTLKLNSLGRLWPASDKYDSNVLDDMGPLECDDDALAIAESMPKLHHLQLMANRLTNTGLNAILDGCPHLEHLD 265          
BLAST of FC920643 vs. ExPASy Swiss-Prot
Match: FBL22_ARATH (Putative F-box/LRR-repeat protein 22 OS=Arabidopsis thaliana GN=FBL22 PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.090e-37
Identity = 91/226 (40.27%), Postives = 124/226 (54.87%), Query Frame = 1
Query:   34 SRMSTGTAEQESCDWTQLPADVTSTILSKIGAIDVLTSAQRVCSSWLRICHDPAMWRNIDMHNLGDLWDMDHDLEKMCRHAVDRSNGQLLSINIEY--FGTDELLQYIAXXXXXXXXXXXVSCYNISDQGFCEAIKGFPXXXXXXXXXXXXXQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDGCPHLESLD 705
            S++     E++  +W +LP D+ S+IL ++  +++L +A++VC SW R+  DP +WR IDM NL  L+ + + +E  CRH VD S G LL  NI+   F T  LL Y+A           V    I+  G  EAI   P             +E  + +G  CP L++ KL   G      E D+DA AIA+ M GL HLQL  N LTN+GL AILDGCPHLE LD
Sbjct:   13 SQLPVMKGEEKPSNWAELPPDLLSSILLRLSPLEILENARKVCRSWRRVSKDPLIWRRIDMRNLRRLYCI-YAMEACCRHVVDLSQGGLLEFNIDQWRFQTTSLLNYMAERSSNLRRLR-VKGGQITSVGIFEAIVKLPLLEELELLYCSIEEEHFKTIGQACPNLKTLKLV--GFWSHLNESDNDALAIADTMPGLLHLQLISNGLTNIGLNAILDGCPHLECLD 234          
BLAST of FC920643 vs. ExPASy Swiss-Prot
Match: SKIP1_ARATH (F-box protein SKIP1 OS=Arabidopsis thaliana GN=SKIP1 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.802e-15
Identity = 65/240 (27.08%), Postives = 102/240 (42.50%), Query Frame = 1
Query:   58 EQESCDWTQLPADVTSTILSKIGAIDVLTSAQRVCSSWLRICHDPAMWRNIDMHNLGD-------LW--DMDHDLEKMCRHAVDRSNGQLLSINIEYFGTDELLQYIAXXXXXXXXXXXVSCYNISDQGFCE-AIKGFPXXXXXXXXXXXXXQEALEAVGSLCPLLRSFKLN----NRGH----------RCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDGCPHLESLD 705
            E++  DW  L  ++   I+S++   ++ T    V  SWL +C DP +W   D+    D       LW  + +  ++ M R  VD S G L  I + +  +D  L Y A            S  N++D    + A +                 + L  +G  CP LR  K N    +  H           CP+ + D +A AI ++M  L HL++  + L+  GL +I +GCP LE LD
Sbjct:    2 EEDGSDWGGLAPEILINIISRLTIQELWTGPMFVQKSWLTVCRDPYLWSIFDLEPWFDSYPESTHLWSPEFEQKVDLMLRSVVDWSEGGLTKIRVRHC-SDHALSYAADRCPNLQVLAIRSSPNVTDASMTKIAFRCRSLKELDISYCHEISHDTLVMIGRNCPNLRILKRNLMDWSSRHIGSVPTEYLDACPQ-DGDTEADAIGKHMINLEHLEIQFSRLSVKGLASICEGCPKLEYLD 239          
The following BLAST results are available for this feature:
BLAST of FC920643 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
SKI19_ARATH1.399e-5351.40F-box protein SKIP19 OS=Arabidopsis thaliana GN=SK... [more]
FBL23_ARATH6.499e-5147.69Putative F-box/LRR-repeat protein 23 OS=Arabidopsi... [more]
FB221_ARATH1.895e-4242.15Putative F-box protein At4g05480 OS=Arabidopsis th... [more]
FBL9_ARATH1.358e-4043.72Putative F-box/LRR-repeat protein 9 OS=Arabidopsis... [more]
FBL21_ARATH2.169e-3841.13Putative F-box/LRR-repeat protein 21 OS=Arabidopsi... [more]
FBL22_ARATH4.090e-3740.27Putative F-box/LRR-repeat protein 22 OS=Arabidopsi... [more]
SKIP1_ARATH9.802e-1527.08F-box protein SKIP1 OS=Arabidopsis thaliana GN=SKI... [more]
back to top
Properties
Property NameValue
Genbank descriptionC32011B08EF RVDevelop1 Citrus clementina cDNA clone C32011B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920643 ID=FC920643; Name=FC920643; organism=Citrus clementina; type=EST; length=707bp
GAAGCTTTATGTTTCAGGATATCATGCAACATTAGCAGAATGAGCACAGG
CACGGCGGAGCAAGAATCATGCGACTGGACGCAGTTGCCGGCGGACGTGA
CGTCAACGATTCTATCAAAAATCGGCGCCATCGATGTGCTGACGAGCGCG
CAACGTGTGTGCTCTTCTTGGCTGAGGATCTGCCACGATCCCGCCATGTG
GCGGAACATTGACATGCACAACTTAGGAGATTTGTGGGACATGGACCATG
ACTTGGAGAAGATGTGCCGCCACGCTGTTGACCGTAGCAACGGCCAATTG
CTTTCCATCAATATCGAGTACTTCGGTACCGATGAGCTTCTCCAATACAT
CGCTAATAGGTCAAGGAATCTCAGGAATCTCAGACTTGTGTCATGTTATA
ACATTTCAGACCAAGGATTTTGTGAAGCTATTAAAGGGTTTCCACTGCTC
GAGGAGCTTGAACTTTCATACTGCTCATTATCACAAGAAGCATTGGAAGC
TGTTGGGAGCCTTTGCCCACTTCTGAGATCATTTAAATTGAACAACCGGG
GTCACAGGTGCCCAAAAATAGAGTGTGATGATGATGCGAAAGCTATAGCA
GAAAACATGCATGGATTGCGCCATCTCCAGTTATTTGGAAACGAGCTGAC
AAATGTGGGGTTGCAGGCTATTCTTGATGGCTGTCCTCACCTTGAATCAC
TTGACCT
back to top