FC920666

Overview
NameFC920666
Unique NameFC920666
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920666_ssr177 microsatellite FC920666_ssr177:177..188. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig5182 contig Ccv1_Contig5182:70..772. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920666 vs. ExPASy Swiss-Prot
Match: SODCP_SOLCS (Superoxide dismutase [Cu-Zn], chloroplastic OS=Solidago canadensis var. scabra GN=SODCP PE=2 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 1.900e-63
Identity = 128/204 (62.75%), Postives = 147/204 (72.06%), Query Frame = 3
Query:   87 AHVLLVAAPPSSSHTLLATLPNPXXXXXXXXXXXXXXXXXXAFHGVSLKFP---SRLNLSLAAVASKKPLTXXXXXXXXXXXLKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKVG 689
            AH +L ++P +++ +L+  + NP                  +FHGVSLK       L LS AA A+ KPLT           LKGTS+VEGVVTLTQE+ GPTTVNV++TGLTPGPHGFHLHE+GDTTNGCISTG HFNPN  THGAP+DE RHAGDLGNI+ANA+GVAEATIVDNQI L GPN VVGRAFVVHEL DDLGK G
Sbjct:    3 AHCILFSSPAATT-SLIFPISNPNTAVSLPSS---------SFHGVSLKSTINRQSLTLSAAASAAPKPLTVFAATKKAVAVLKGTSSVEGVVTLTQEEDGPTTVNVKITGLTPGPHGFHLHEFGDTTNGCISTGPHFNPNGNTHGAPEDENRHAGDLGNIIANADGVAEATIVDNQIPLTGPNAVVGRAFVVHELADDLGKGG 196          
BLAST of FC920666 vs. ExPASy Swiss-Prot
Match: SODCP_SPIOL (Superoxide dismutase [Cu-Zn], chloroplastic OS=Spinacia oleracea GN=SODCP PE=1 SV=2)

HSP 1 Score: 237.654 bits (605), Expect = 4.680e-62
Identity = 122/202 (60.40%), Postives = 145/202 (71.78%), Query Frame = 3
Query:   87 AHVLLVAAPPSSSHTLLATLPNPXXXXXXXXXXXXXXXXXXAFHGVSLKF-PSRLNLSLAAVASKKPLTXXXXXXXXXXXLKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKVG 689
            AH +L +AP  ++ +L++   +                   +F+G+S K  P+  +LSL+  A+ KPLT           LKGTSNVEGVVTLTQED GPTTVNVR++GL PG HGFHLHE+GDTTNGC+STG HFNP+  THGAP+DEVRHAGDLGNIVAN +GVAEATIVDNQI L GPN+VVGRA VVHELEDDLGK G
Sbjct:    3 AHTILASAPSHTTFSLISPFSSTPTNALSSSLQSS------SFNGLSFKLSPTTQSLSLSTSAASKPLTIVAATKKAVAVLKGTSNVEGVVTLTQEDDGPTTVNVRISGLAPGKHGFHLHEFGDTTNGCMSTGPHFNPDKKTHGAPEDEVRHAGDLGNIVANTDGVAEATIVDNQIPLTGPNSVVGRALVVHELEDDLGKGG 198          
BLAST of FC920666 vs. ExPASy Swiss-Prot
Match: SODCP_PEA (Superoxide dismutase [Cu-Zn], chloroplastic OS=Pisum sativum GN=SODCP PE=2 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 6.112e-62
Identity = 127/202 (62.87%), Postives = 141/202 (69.80%), Query Frame = 3
Query:   84 MAHVLLVAAPPSSSHTLLATLPNPXXXXXXXXXXXXXXXXXXAFHGVSLKFPSRLNLSLAAVASKKPLTXXXXXXXXXXXLKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKVG 689
            MA   LV+  P SSH+LL T                      +F GVS+K   +   S  A ++ KPLT           LKGTS VEGVVTLTQ+D GPTTVNVR+TGLTPG HGFHLHEYGDTTNGCISTG HFNPN +THGAP+DE+RHAGDLGNIVANA GVAEATIVDNQI L GPN+VVGRA VVHEL+DDLGK G
Sbjct:    1 MASQTLVSPSPLSSHSLLRT----------------------SFSGVSVKLAPQF--STLATSNFKPLTVVAAAKKAVSVLKGTSAVEGVVTLTQDDEGPTTVNVRITGLTPGLHGFHLHEYGDTTNGCISTGPHFNPNKLTHGAPEDEIRHAGDLGNIVANAEGVAEATIVDNQIPLTGPNSVVGRALVVHELQDDLGKGG 178          
BLAST of FC920666 vs. ExPASy Swiss-Prot
Match: SODCP_PETHY (Superoxide dismutase [Cu-Zn], chloroplastic OS=Petunia hybrida GN=SODCP PE=2 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 3.962e-61
Identity = 116/162 (71.60%), Postives = 130/162 (80.25%), Query Frame = 3
Query:  210 AFHGVSLKFPSRL--NLSLAAVASKKPLTXXXXXXXXXXXLKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKVG 689
            +FHGVSLK  S+   +L+L++V S KP             LKGTSNVEGVVTLTQ+D GPTTV VR+TGL PG HGFHLHE+GDTTNGC+STG HFNPN +THGAP DEVRHAGDLGNI ANA+GVAEAT+VDNQI L GPN+VVGRA VVHELEDDLGK G
Sbjct:   34 SFHGVSLKVKSKTPQSLTLSSVTSPKPFIVFAATKKAVAVLKGTSNVEGVVTLTQDDDGPTTVKVRITGLAPGLHGFHLHEFGDTTNGCMSTGPHFNPNGLTHGAPGDEVRHAGDLGNIEANASGVAEATLVDNQIPLSGPNSVVGRALVVHELEDDLGKGG 195          
BLAST of FC920666 vs. ExPASy Swiss-Prot
Match: SODCP_ARATH (Superoxide dismutase [Cu-Zn], chloroplastic OS=Arabidopsis thaliana GN=SODCP PE=1 SV=2)

HSP 1 Score: 233.032 bits (593), Expect = 1.153e-60
Identity = 119/163 (73.01%), Postives = 131/163 (80.37%), Query Frame = 3
Query:  210 AFHGVSLKFPS--RL-NLSLAAVASKKPLTXXXXXXXXXXXLKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKVG 689
            +F GVSL   +  RL ++S A  A  K LT           LKGTS+VEGVVTLTQ+D GPTTVNVR+TGLTPGPHGFHLHE+GDTTNGCISTG HFNPNNMTHGAP+DE RHAGDLGNI ANA+GVAE TIVDNQI L GPN+VVGRAFVVHEL+DDLGK G
Sbjct:   30 SFRGVSLNNNNLHRLQSVSFAVKAPSKALTVVSAAKKAVAVLKGTSDVEGVVTLTQDDSGPTTVNVRITGLTPGPHGFHLHEFGDTTNGCISTGPHFNPNNMTHGAPEDECRHAGDLGNINANADGVAETTIVDNQIPLTGPNSVVGRAFVVHELKDDLGKGG 192          
BLAST of FC920666 vs. ExPASy Swiss-Prot
Match: SODCP_VITVI (Superoxide dismutase [Cu-Zn], chloroplastic OS=Vitis vinifera GN=SODCP PE=2 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 1.505e-60
Identity = 117/188 (62.23%), Postives = 135/188 (71.81%), Query Frame = 3
Query:  126 HTLLATLPNPXXXXXXXXXXXXXXXXXXAFHGVSLKFPSRLNLSLAAVASKKPLTXXXXXXXXXXXLKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKVG 689
            +TLL+T P+                    FHG+SLK   +   S+    + KPL+           LKGTS+VEGVVTL+QED GPTTV+VR+TGLTPG HGFHLHE+GDTTNGC+STGAHFNPN MTHGAP+D+VRHAGDLGNI+ANA GVAEATIVD QI L GPN V+GRA VVHELEDDLGK G
Sbjct:    4 NTLLSTAPSRVFLSFPNPSPNPSPQLHSQFHGLSLKLTRQ---SIPLATAPKPLSVVAVTKKAVAVLKGTSSVEGVVTLSQEDDGPTTVSVRITGLTPGNHGFHLHEFGDTTNGCMSTGAHFNPNGMTHGAPEDDVRHAGDLGNIIANAEGVAEATIVDTQIPLSGPNAVIGRALVVHELEDDLGKGG 188          
BLAST of FC920666 vs. ExPASy Swiss-Prot
Match: SODCP_SOLLC (Superoxide dismutase [Cu-Zn], chloroplastic OS=Solanum lycopersicum GN=SODCP.2 PE=2 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 1.966e-60
Identity = 115/162 (70.99%), Postives = 130/162 (80.25%), Query Frame = 3
Query:  210 AFHGVSLKFPSRL--NLSLAAVASKKPLTXXXXXXXXXXXLKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKVG 689
            +F GVSL   ++   +L+L AV + KPLT           LKG SNVEGVVTL+Q+D GPTTVNVR+TGL PG HGFHLHEYGDTTNGC+STGAHFNPN +THGAP DE+RHAGDLGNIVANA+GVAE T+VDNQI L GPN+VVGRA VVHELEDDLGK G
Sbjct:   32 SFLGVSLNVNAKFGQSLTLYAVTTPKPLTVFAATKKAVAVLKGNSNVEGVVTLSQDDDGPTTVNVRITGLAPGLHGFHLHEYGDTTNGCMSTGAHFNPNKLTHGAPGDEIRHAGDLGNIVANADGVAEVTLVDNQIPLTGPNSVVGRALVVHELEDDLGKGG 193          
BLAST of FC920666 vs. ExPASy Swiss-Prot
Match: SODCP_ORYSJ (Superoxide dismutase [Cu-Zn], chloroplastic OS=Oryza sativa subsp. japonica GN=SODCP PE=1 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 4.843e-59
Identity = 113/149 (75.84%), Postives = 120/149 (80.54%), Query Frame = 3
Query:  243 RLNLSLAAVASKKPLTXXXXXXXXXXXLKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKVG 689
            RL    A  A+ + L            LKGTS VEGVVTLTQ+D GPTTVNVRVTGLTPG HGFHLHE+GDTTNGCISTG HFNPNN+THGAP+DEVRHAGDLGNIVANA GVAEATIVD QI L GPN+VVGRAFVVHELEDDLGK G
Sbjct:   39 RLAAGPAGAAAARALVVADATKKAVAVLKGTSQVEGVVTLTQDDQGPTTVNVRVTGLTPGLHGFHLHEFGDTTNGCISTGPHFNPNNLTHGAPEDEVRHAGDLGNIVANAEGVAEATIVDKQIPLSGPNSVVGRAFVVHELEDDLGKGG 187          
BLAST of FC920666 vs. ExPASy Swiss-Prot
Match: SODCP_MEDSA (Superoxide dismutase [Cu-Zn], chloroplastic OS=Medicago sativa GN=SODCP PE=2 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 9.133e-58
Identity = 118/202 (58.42%), Postives = 139/202 (68.81%), Query Frame = 3
Query:   84 MAHVLLVAAPPSSSHTLLATLPNPXXXXXXXXXXXXXXXXXXAFHGVSLKFPSRLNLSLAAVASKKPLTXXXXXXXXXXXLKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKVG 689
            MA   L++  P +SH+LL +                      +F GVS+K   +   S  + +  +PL+           LKG S VEGVVTLTQE+  PTTVNVR+TGLTPG HGFHLHEYGDTTNGCISTG HFNPN +THGAP+DE+RHAGDLGNI+A+ANGVAEATIVDNQI L GPN+V+GRA VVHELEDDLGK G
Sbjct:    1 MASHSLMSPSPLTSHSLLRS----------------------SFSGVSVKLSPQF--STLSRSKFQPLSVVAAAKKAVAVLKGNSTVEGVVTLTQENESPTTVNVRITGLTPGLHGFHLHEYGDTTNGCISTGPHFNPNQLTHGAPEDEIRHAGDLGNIIADANGVAEATIVDNQIPLTGPNSVIGRALVVHELEDDLGKGG 178          
BLAST of FC920666 vs. ExPASy Swiss-Prot
Match: SODCP_ZANAE (Superoxide dismutase [Cu-Zn], chloroplastic OS=Zantedeschia aethiopica GN=SODCP PE=2 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 7.731e-57
Identity = 107/145 (73.79%), Postives = 118/145 (81.38%), Query Frame = 3
Query:  255 SLAAVASKKPLTXXXXXXXXXXXLKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKVG 689
            S+AA AS + +            LKGTS V+GVVTL QED GPTTVNVR+TGLTPG HGFHLHEYGDTTNGCISTG+HFNPN +THGAP D VRHAGDLGNIVAN +G+AEATIVD+QI L G N+VVGRAFVVHELEDDLGK G
Sbjct:   48 SIAAAASPRSMVVVAATKKAVAVLKGTSQVDGVVTLVQEDDGPTTVNVRITGLTPGLHGFHLHEYGDTTNGCISTGSHFNPNKLTHGAPMDVVRHAGDLGNIVANVDGLAEATIVDDQIPLSGSNSVVGRAFVVHELEDDLGKGG 192          
The following BLAST results are available for this feature:
BLAST of FC920666 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 141
Match NameE-valueIdentityDescription
SODCP_SOLCS1.900e-6362.75Superoxide dismutase [Cu-Zn], chloroplastic OS=Sol... [more]
SODCP_SPIOL4.680e-6260.40Superoxide dismutase [Cu-Zn], chloroplastic OS=Spi... [more]
SODCP_PEA6.112e-6262.87Superoxide dismutase [Cu-Zn], chloroplastic OS=Pis... [more]
SODCP_PETHY3.962e-6171.60Superoxide dismutase [Cu-Zn], chloroplastic OS=Pet... [more]
SODCP_ARATH1.153e-6073.01Superoxide dismutase [Cu-Zn], chloroplastic OS=Ara... [more]
SODCP_VITVI1.505e-6062.23Superoxide dismutase [Cu-Zn], chloroplastic OS=Vit... [more]
SODCP_SOLLC1.966e-6070.99Superoxide dismutase [Cu-Zn], chloroplastic OS=Sol... [more]
SODCP_ORYSJ4.843e-5975.84Superoxide dismutase [Cu-Zn], chloroplastic OS=Ory... [more]
SODCP_MEDSA9.133e-5858.42Superoxide dismutase [Cu-Zn], chloroplastic OS=Med... [more]
SODCP_ZANAE7.731e-5773.79Superoxide dismutase [Cu-Zn], chloroplastic OS=Zan... [more]

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Properties
Property NameValue
Genbank descriptionC32011E01EF RVDevelop1 Citrus clementina cDNA clone C32011E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920666 ID=FC920666; Name=FC920666; organism=Citrus clementina; type=EST; length=700bp
ACACCAGAAACACAAAATCGCATTATCAATTAACATCATCCACCCGCTCA
CCCTCACGCTCAATGCAAGCCGCAATAGCAGCCATGGCTCACGTTCTCCT
CGTAGCAGCACCGCCCTCTTCATCTCACACACTCCTTGCCACATTGCCAA
ATCCTAGCAGTGTCACGCGCTCTTCCTCTTCTTCTTCTCATTCTCCCTCG
CTTCACTCTGCATTCCACGGCGTCTCCCTCAAATTCCCCTCTCGTCTCAA
CTTATCTCTCGCCGCCGTGGCCTCCAAGAAGCCGTTGACTGTCGTTGCTG
CCGCCAAGAAAGCGGTGGCTGTTCTTAAAGGCACTTCCAATGTTGAAGGA
GTTGTTACGTTGACCCAAGAAGATGGCGGTCCTACGACTGTCAATGTTCG
TGTCACTGGTCTTACTCCTGGGCCTCACGGGTTCCACCTACACGAATATG
GTGATACGACAAATGGGTGTATATCAACAGGAGCACATTTCAATCCTAAT
AACATGACACACGGTGCTCCTAAAGATGAAGTGCGACACGCGGGTGACCT
GGGAAACATAGTTGCTAACGCCAATGGTGTGGCAGAAGCAACAATTGTGG
ACAACCAGATATCACTGGATGGTCCAAACACAGTAGTTGGAAGAGCCTTT
GTGGTTCATGAGCTTGAGGATGACCTTGGAAAAGTGGGCATGACTTAGTC
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