FC920681

Overview
NameFC920681
Unique NameFC920681
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14120 contig Ccv1_Contig14120:1..706. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC920681 vs. ExPASy Swiss-Prot
Match: NOTUM_MOUSE (Protein notum homolog OS=Mus musculus GN=Notum PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 7.703e-12
Identity = 42/127 (33.07%), Postives = 65/127 (51.18%), Query Frame = 3 
Query:  282 CLDGSPPAYHFDKGFGAGINNWLVHIEGGGWCNNVTTCLERKKT--RLGSSKQMVKVVAFSGMLSNKQKFNPDFYNWNRIKVRYCDGASFTGDVEAVNPANNLHFRGSRVFQAVMEDLMAKGMKMLK 656
            C DGSP  Y+  +  G+    WL+ +EGG +C N   C  R  T  RL SSK        +G+LS++ + NP ++N N + + YC    ++G     +  N   F GS + Q V+ +L+ KG+   K
Sbjct:  108 CNDGSPAGYYLKESKGS--RRWLLFLEGGWYCFNRENCDSRYSTMRRLMSSKDWPHTRTGTGILSSQPEENPHWWNANMVFIPYCSSDVWSG-ASPKSDKNEYAFMGSLIIQEVVRELLGKGLSGAK 231
[Close]
BLAST of FC920681 vs. ExPASy Swiss-Prot
Match: NOTUM_HUMAN (Protein notum homolog OS=Homo sapiens GN=NOTUM PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 4.993e-11
Identity = 39/127 (30.71%), Postives = 67/127 (52.76%), Query Frame = 3 
Query:  282 CLDGSPPAYHFDKGFGAGINNWLVHIEGGGWCNNVTTCLERKKT--RLGSSKQMVKVVAFSGMLSNKQKFNPDFYNWNRIKVRYCDGASFTGDVEAVNPANNLHFRGSRVFQAVMEDLMAKGMKMLK 656
            C DGSP  Y+  +  G+    WL+ +EGG +C N   C  R  T  RL SS+   +    +G+LS++ + NP ++N N + + YC    ++G   + +  N   F G+ + Q V+ +L+ +G+   K
Sbjct:  101 CNDGSPAGYYLKESRGS--RRWLLFLEGGWYCFNRENCDSRYDTMRRLMSSRDWPRTRTGTGILSSQPEENPYWWNANMVFIPYCSSDVWSG-ASSKSEKNEYAFMGALIIQEVVRELLGRGLSGAK 224
The following BLAST results are available for this feature:
BLAST of FC920681 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
NOTUM_MOUSE7.703e-1233.07Protein notum homolog OS=Mus musculus GN=Notum PE=... [more]
NOTUM_HUMAN4.993e-1130.71Protein notum homolog OS=Homo sapiens GN=NOTUM PE=... [more]
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Properties
Property NameValue
Genbank descriptionC32011F10EF RVDevelop1 Citrus clementina cDNA clone C32011F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920681 ID=FC920681; Name=FC920681; organism=Citrus clementina; type=EST; length=704bp
GGAAAAAGAAGCTAGCTACATCCTTTGATCCTTTCTCCTTGAGCTCCCAA
AAAATTGCCATTACTATTTCTTCCCAATGCACTAACTTGGGCTCCTTTTG
CATACTCTTTAAACTAGTCCCATTTGCAGATAATTTTTTTTTTTGGCCTC
ATTTCAGAATGGTTGCTGCAAGAATGGGCCAATGGTTGAATCTTTTAGTA
TGTGCACTCATATTACTGAAAGCTGACGGCTTTAATGTAGGAATCACTTA
TGTTGAGAATGCTGTAGCGAAAGGAGCTGTTTGTTTGGATGGTAGCCCGC
CTGCTTACCATTTTGATAAGGGGTTTGGTGCTGGGATCAATAATTGGTTG
GTTCACATTGAGGGAGGAGGATGGTGCAACAATGTCACAACTTGTCTTGA
ACGTAAGAAAACCCGTTTAGGTTCATCTAAGCAAATGGTCAAGGTAGTTG
CTTTCTCTGGGATGCTGAGCAACAAGCAAAAATTTAACCCAGACTTCTAC
AATTGGAATAGAATCAAGGTTAGATACTGTGATGGTGCATCGTTTACTGG
AGATGTGGAGGCTGTCAATCCAGCAAATAACCTTCACTTCAGAGGAAGCA
GGGTTTTTCAAGCTGTCATGGAGGATCTAATGGCTAAAGGGATGAAAATG
CTCAAATGCTGTTCTTTCTGGCTGCTCAGCTGGAGGGTTGACTTCAATTT
GCAT
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