FC920685

Overview
NameFC920685
Unique NameFC920685
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length772
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14172 contig Ccv1_Contig14172:1..773. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC920685 vs. ExPASy Swiss-Prot
Match: SIN3_ARATH (Paired amphipathic helix protein Sin3 OS=Arabidopsis thaliana GN=SIN3 PE=1 SV=2)

HSP 1 Score: 174.096 bits (440), Expect = 2.785e-43
Identity = 108/246 (43.90%), Postives = 133/246 (54.07%), Query Frame = 1 
Query:    1 EKEEGELSPNGDFEEDNFGVYGDAAVKTLPKAKHGVESRQYQSKNEKG------LQHQVVXXXXXXXXXXXXXXXXXVAGDDASGSESAGXXXXXXXXXXXXXXXXXXXXGKAESEGEADGMAYQHFVGGDCMSLPMSERFLLSVKPLAKFVPATSVEERKD------CRVFYGNDDFYVLFRLHQTLYERIQWAKMNTTGAEMKRRTSKEASCSDLYARFMTALHNLLDGSIDNAKFEDECRAII 702
            E+EEGELSPNGDFEEDNF VY     +T  KA     +     ++ +G       + +                       D SG+ES G                     K ESEGEA+ MA  H    +  +LP+S RFLL VKPL K+VP+      KD       +VFYGND FYVLFRLH+ LYERI  AK+N++  E K RTS   + +D YARFMTAL+NLLDG+ DNAKFED+CRAII
Sbjct:  914 EREEGELSPNGDFEEDNFAVYAKTDFETFSKANDSTGNNISGDRSREGEPSCLETRAENDAEGDENAARSSEDSRNEYENGDVSGTESGGGEDPEDDLDNN---------NKGESEGEAECMADAHDAEENGSALPVSARFLLHVKPLVKYVPSAIALHDKDKDSLKNSQVFYGNDSFYVLFRLHRILYERILSAKVNSSSPEGKWRTSNTKNPTDSYARFMTALYNLLDGTSDNAKFEDDCRAII 1150

HSP 2 Score: 22.7126 bits (47), Expect = 2.785e-43
Identity = 9/12 (75.00%), Postives = 10/12 (83.33%), Query Frame = 3 
Query:  708 QSYVLFTLDSTI 743
            QSY+LFTLD  I
Sbjct: 1153 QSYILFTLDKLI 1164
The following BLAST results are available for this feature:
BLAST of FC920685 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
SIN3_ARATH2.785e-4343.90Paired amphipathic helix protein Sin3 OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionC32011G03EF RVDevelop1 Citrus clementina cDNA clone C32011G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920685 ID=FC920685; Name=FC920685; organism=Citrus clementina; type=EST; length=772bp
GAAAAAGAAGAGGGTGAGTTATCCCCCAATGGTGATTTTGAGGAGGATAA
TTTTGGTGTCTATGGAGATGCTGCTGTGAAGACCTTGCCTAAGGCAAAGC
ATGGTGTTGAAAGCAGGCAATATCAGTCTAAAAATGAAAAAGGATTACAA
CATCAGGTTGTTGGAGGAGAAAATGATGCAGATGCTGATGATGAGGACAG
TGGAAATGCTTCTGTGGCTGGTGATGATGCCTCAGGAAGTGAGTCTGCAG
GTGATGAGTACTCCCGCGAGGAGCATGAAGAGGAGGAAGATGTAGAACGA
GATGATGTTGACGGCAAGGCTGAGAGTGAAGGCGAAGCAGATGGAATGGC
TTATCAACACTTTGTGGGTGGAGATTGCATGTCATTGCCTATGTCTGAAC
GTTTTCTTTTGTCTGTCAAGCCTCTTGCAAAGTTTGTGCCTGCAACCTCA
GTTGAAGAAAGGAAAGATTGTAGGGTATTTTATGGAAATGACGACTTTTA
TGTGCTTTTCAGGCTTCATCAAACTCTATATGAAAGAATTCAATGGGCAA
AAATGAATACAACAGGTGCTGAAATGAAACGGAGAACTTCTAAGGAGGCC
AGTTGCTCAGATCTCTATGCCAGATTTATGACTGCACTACACAATTTGCT
TGACGGATCGATTGACAATGCGAAGTTTGAGGATGAGTGCCGAGCTATTA
TAGAAATCAGTCATATGTGTTGTTTACCTTGGACAGTACTATATAGATAT
GTAACAGCTTCAACTGTGCTGC
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