FC920701
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_RHOCS (50S ribosomal protein L4 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=rplD PE=3 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 2.829e-18 Identity = 44/69 (63.77%), Postives = 53/69 (76.81%), Query Frame = 3 Query: 453 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659 V N NE G + LA +VF +P R+DI+ R+V WQLAKR+QGTH TK ISE++G KKPWRQKGTGRAR Sbjct: 5 VKNLNNETVGEIELADEVFGLPTRQDILTRMVLWQLAKRRQGTHKTKGISEIAGTTKKPWRQKGTGRAR 73
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_RHORT (50S ribosomal protein L4 OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=rplD PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 7.703e-16 Identity = 37/63 (58.73%), Postives = 49/63 (77.78%), Query Frame = 3 Query: 471 EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659 +D G + L+ VF +P+R D++HR+VRWQLA+RQ GTH TK ISE+SG KP++QKGTG AR Sbjct: 11 KDAGSIELSDSVFGLPVRTDLLHRMVRWQLARRQAGTHKTKGISEISGTTAKPFKQKGTGHAR 73
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_BDEBA (50S ribosomal protein L4 OS=Bdellovibrio bacteriovorus GN=rplD PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 7.703e-16 Identity = 39/71 (54.93%), Postives = 52/71 (73.24%), Query Frame = 3 Query: 447 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659 + V N+ E G + LA DVF+ P++K+++H VV+WQLA R+QGTH TKT VSG KKP++QKGTG AR Sbjct: 4 VNVLNWKKEKVGSVELAADVFETPVKKEVLHTVVQWQLAARRQGTHMTKTKGLVSGGGKKPFKQKGTGGAR 74
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_MAGSA (50S ribosomal protein L4 OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=rplD PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.006e-15 Identity = 40/69 (57.97%), Postives = 49/69 (71.01%), Query Frame = 3 Query: 453 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659 V + N+ G + LA ++F VP+R DI+ R V WQLAKRQ G H TKTISE+SG KKP+ QKG GRAR Sbjct: 5 VISLDNQTVGEIELADEIFGVPVRGDILFRAVNWQLAKRQSGNHKTKTISEISGTTKKPFAQKGGGRAR 73
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_ANAMM (50S ribosomal protein L4 OS=Anaplasma marginale (strain St. Maries) GN=rplD PE=3 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 3.236e-14 Identity = 38/71 (53.52%), Postives = 50/71 (70.42%), Query Frame = 3 Query: 447 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659 + V N NE G + L+ +VF V +R+D++ VV WQLAKR+ GTH T+ IS+VSG KP+RQK TGRAR Sbjct: 3 VNVVNIKNEVVGKVQLSAEVFGVQLRRDVLRDVVTWQLAKRRAGTHKTRCISDVSGTTAKPYRQKHTGRAR 73
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_ANAMF (50S ribosomal protein L4 OS=Anaplasma marginale (strain Florida) GN=rplD PE=3 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 3.236e-14 Identity = 38/71 (53.52%), Postives = 50/71 (70.42%), Query Frame = 3 Query: 447 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659 + V N NE G + L+ +VF V +R+D++ VV WQLAKR+ GTH T+ IS+VSG KP+RQK TGRAR Sbjct: 3 VNVVNIKNEVVGKVQLSAEVFGVQLRRDVLRDVVTWQLAKRRAGTHKTRCISDVSGTTAKPYRQKHTGRAR 73
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_MESSB (50S ribosomal protein L4 OS=Mesorhizobium sp. (strain BNC1) GN=rplD PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.230e-13 Identity = 36/71 (50.70%), Postives = 50/71 (70.42%), Query Frame = 3 Query: 447 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659 + VT +D G + ++ ++F + R+DI+HRVVRWQLAKRQQGTH K +E++ K +RQKGTGRAR Sbjct: 3 LKVTTLAGKDAGKVEVSDEIFGLDPREDILHRVVRWQLAKRQQGTHKAKGRAEIARTGAKMYRQKGTGRAR 73
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_RICBR (50S ribosomal protein L4 OS=Rickettsia bellii (strain RML369-C) GN=rplD PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 2.098e-13 Identity = 40/70 (57.14%), Postives = 48/70 (68.57%), Query Frame = 3 Query: 453 VTNFFNEDKGFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659 + N NE+ G + L D+F V IR DII +VV WQ AK GTH TKT+SEVSG KKP++QKGTG AR Sbjct: 5 ILNLANEEIGEISLNEDIFAVEFIRDDIIKQVVDWQRAKAMAGTHKTKTVSEVSGTTKKPFKQKGTGNAR 74
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_RICB8 (50S ribosomal protein L4 OS=Rickettsia bellii (strain OSU 85-389) GN=rplD PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 2.098e-13 Identity = 40/70 (57.14%), Postives = 48/70 (68.57%), Query Frame = 3 Query: 453 VTNFFNEDKGFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659 + N NE+ G + L D+F V IR DII +VV WQ AK GTH TKT+SEVSG KKP++QKGTG AR Sbjct: 5 ILNLANEEIGEISLNEDIFAVEFIRDDIIKQVVDWQRAKAMAGTHKTKTVSEVSGTTKKPFKQKGTGNAR 74
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_DESAD (50S ribosomal protein L4 OS=Desulfovibrio salexigens (strain ATCC 14822 / DSM 2638 / NCIB 8403 / VKM B-1763) GN=rplD PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 2.098e-13 Identity = 36/63 (57.14%), Postives = 47/63 (74.60%), Query Frame = 3 Query: 471 EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659 ++ G M LA +VF+VP++ +I+H VVR QLA ++QGTH+TKT G KPWRQKGTGRAR Sbjct: 12 KEVGSMDLAPEVFEVPVKPEILHLVVRSQLAAKRQGTHATKTRGMKRGGGAKPWRQKGTGRAR 74 The following BLAST results are available for this feature:
BLAST of FC920701 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 101
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC920701 ID=FC920701; Name=FC920701; organism=Citrus clementina; type=EST; length=660bpback to top |