FC920701

Overview
NameFC920701
Unique NameFC920701
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length660
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14179 contig Ccv1_Contig14179:1..660. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_RHOCS (50S ribosomal protein L4 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=rplD PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.829e-18
Identity = 44/69 (63.77%), Postives = 53/69 (76.81%), Query Frame = 3
Query:  453 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659
            V N  NE  G + LA +VF +P R+DI+ R+V WQLAKR+QGTH TK ISE++G  KKPWRQKGTGRAR
Sbjct:    5 VKNLNNETVGEIELADEVFGLPTRQDILTRMVLWQLAKRRQGTHKTKGISEIAGTTKKPWRQKGTGRAR 73          
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_RHORT (50S ribosomal protein L4 OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=rplD PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.703e-16
Identity = 37/63 (58.73%), Postives = 49/63 (77.78%), Query Frame = 3
Query:  471 EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659
            +D G + L+  VF +P+R D++HR+VRWQLA+RQ GTH TK ISE+SG   KP++QKGTG AR
Sbjct:   11 KDAGSIELSDSVFGLPVRTDLLHRMVRWQLARRQAGTHKTKGISEISGTTAKPFKQKGTGHAR 73          
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_BDEBA (50S ribosomal protein L4 OS=Bdellovibrio bacteriovorus GN=rplD PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.703e-16
Identity = 39/71 (54.93%), Postives = 52/71 (73.24%), Query Frame = 3
Query:  447 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659
            + V N+  E  G + LA DVF+ P++K+++H VV+WQLA R+QGTH TKT   VSG  KKP++QKGTG AR
Sbjct:    4 VNVLNWKKEKVGSVELAADVFETPVKKEVLHTVVQWQLAARRQGTHMTKTKGLVSGGGKKPFKQKGTGGAR 74          
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_MAGSA (50S ribosomal protein L4 OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=rplD PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.006e-15
Identity = 40/69 (57.97%), Postives = 49/69 (71.01%), Query Frame = 3
Query:  453 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659
            V +  N+  G + LA ++F VP+R DI+ R V WQLAKRQ G H TKTISE+SG  KKP+ QKG GRAR
Sbjct:    5 VISLDNQTVGEIELADEIFGVPVRGDILFRAVNWQLAKRQSGNHKTKTISEISGTTKKPFAQKGGGRAR 73          
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_ANAMM (50S ribosomal protein L4 OS=Anaplasma marginale (strain St. Maries) GN=rplD PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.236e-14
Identity = 38/71 (53.52%), Postives = 50/71 (70.42%), Query Frame = 3
Query:  447 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659
            + V N  NE  G + L+ +VF V +R+D++  VV WQLAKR+ GTH T+ IS+VSG   KP+RQK TGRAR
Sbjct:    3 VNVVNIKNEVVGKVQLSAEVFGVQLRRDVLRDVVTWQLAKRRAGTHKTRCISDVSGTTAKPYRQKHTGRAR 73          
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_ANAMF (50S ribosomal protein L4 OS=Anaplasma marginale (strain Florida) GN=rplD PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.236e-14
Identity = 38/71 (53.52%), Postives = 50/71 (70.42%), Query Frame = 3
Query:  447 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659
            + V N  NE  G + L+ +VF V +R+D++  VV WQLAKR+ GTH T+ IS+VSG   KP+RQK TGRAR
Sbjct:    3 VNVVNIKNEVVGKVQLSAEVFGVQLRRDVLRDVVTWQLAKRRAGTHKTRCISDVSGTTAKPYRQKHTGRAR 73          
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_MESSB (50S ribosomal protein L4 OS=Mesorhizobium sp. (strain BNC1) GN=rplD PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.230e-13
Identity = 36/71 (50.70%), Postives = 50/71 (70.42%), Query Frame = 3
Query:  447 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659
            + VT    +D G + ++ ++F +  R+DI+HRVVRWQLAKRQQGTH  K  +E++    K +RQKGTGRAR
Sbjct:    3 LKVTTLAGKDAGKVEVSDEIFGLDPREDILHRVVRWQLAKRQQGTHKAKGRAEIARTGAKMYRQKGTGRAR 73          
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_RICBR (50S ribosomal protein L4 OS=Rickettsia bellii (strain RML369-C) GN=rplD PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.098e-13
Identity = 40/70 (57.14%), Postives = 48/70 (68.57%), Query Frame = 3
Query:  453 VTNFFNEDKGFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659
            + N  NE+ G + L  D+F V  IR DII +VV WQ AK   GTH TKT+SEVSG  KKP++QKGTG AR
Sbjct:    5 ILNLANEEIGEISLNEDIFAVEFIRDDIIKQVVDWQRAKAMAGTHKTKTVSEVSGTTKKPFKQKGTGNAR 74          
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_RICB8 (50S ribosomal protein L4 OS=Rickettsia bellii (strain OSU 85-389) GN=rplD PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.098e-13
Identity = 40/70 (57.14%), Postives = 48/70 (68.57%), Query Frame = 3
Query:  453 VTNFFNEDKGFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659
            + N  NE+ G + L  D+F V  IR DII +VV WQ AK   GTH TKT+SEVSG  KKP++QKGTG AR
Sbjct:    5 ILNLANEEIGEISLNEDIFAVEFIRDDIIKQVVDWQRAKAMAGTHKTKTVSEVSGTTKKPFKQKGTGNAR 74          
BLAST of FC920701 vs. ExPASy Swiss-Prot
Match: RL4_DESAD (50S ribosomal protein L4 OS=Desulfovibrio salexigens (strain ATCC 14822 / DSM 2638 / NCIB 8403 / VKM B-1763) GN=rplD PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.098e-13
Identity = 36/63 (57.14%), Postives = 47/63 (74.60%), Query Frame = 3
Query:  471 EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGNWKKPWRQKGTGRAR 659
            ++ G M LA +VF+VP++ +I+H VVR QLA ++QGTH+TKT     G   KPWRQKGTGRAR
Sbjct:   12 KEVGSMDLAPEVFEVPVKPEILHLVVRSQLAAKRQGTHATKTRGMKRGGGAKPWRQKGTGRAR 74          
The following BLAST results are available for this feature:
BLAST of FC920701 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 101
Match NameE-valueIdentityDescription
RL4_RHOCS2.829e-1863.7750S ribosomal protein L4 OS=Rhodospirillum centenu... [more]
RL4_RHORT7.703e-1658.7350S ribosomal protein L4 OS=Rhodospirillum rubrum ... [more]
RL4_BDEBA7.703e-1654.9350S ribosomal protein L4 OS=Bdellovibrio bacteriov... [more]
RL4_MAGSA1.006e-1557.9750S ribosomal protein L4 OS=Magnetospirillum magne... [more]
RL4_ANAMM3.236e-1453.5250S ribosomal protein L4 OS=Anaplasma marginale (s... [more]
RL4_ANAMF3.236e-1453.5250S ribosomal protein L4 OS=Anaplasma marginale (s... [more]
RL4_MESSB1.230e-1350.7050S ribosomal protein L4 OS=Mesorhizobium sp. (str... [more]
RL4_RICBR2.098e-1357.1450S ribosomal protein L4 OS=Rickettsia bellii (str... [more]
RL4_RICB82.098e-1357.1450S ribosomal protein L4 OS=Rickettsia bellii (str... [more]
RL4_DESAD2.098e-1357.1450S ribosomal protein L4 OS=Desulfovibrio salexige... [more]

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Properties
Property NameValue
Genbank descriptionC32011H10EF RVDevelop1 Citrus clementina cDNA clone C32011H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920701 ID=FC920701; Name=FC920701; organism=Citrus clementina; type=EST; length=660bp
CCTCTTTCATCGCCCTCGCTGACGCTGCCACTGTTCTGAAACCCATCTTT
CCGGCGGGAATATCAGTGGCAGTCAATTCTCCGTCTTCATCCGACGGCCT
GGTGTCAGTCATTCAGTTCAGAACTTTAAAGACTTCAAAGTTTTATATGG
CGCTGACTGTCTCTAGAAGGCTTTTACGTCGTTTTGGGTCTTTTTCTGCC
TTTGGTCGTTATGAGTCTCCGAGTTTAACGAGCCGATCAATTCGCTCACC
TCCTGATCTTTATGTGGCTTGTTCTGGGGATAACCTCTTTCCATTAAAGA
GCGGTTTGTCTTTCCTTGCTTCTCGAAAGTTTTCGACTACCATTCTAACA
CCTGACTCGAGTGAAGGTGCTTTTCCTTCTGATTTATTGTCGAAGAAGAC
TGTGCTAACACCAGACATTACTATAGGACTTCATCAAGATCTGGTGATTC
CTGTAACAAATTTCTTTAATGAAGACAAGGGCTTCATGGTCTTGGCTGGC
GATGTTTTTGATGTACCTATTAGGAAGGACATTATCCATCGTGTTGTAAG
ATGGCAGCTTGCAAAACGTCAGCAGGGAACACATTCAACAAAAACTATTA
GTGAGGTTAGTGGAAACTGGAAAAAGCCTTGGCGACAGAAGGGTACTGGT
CGAGCTAGGC
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