FC920706

Overview
NameFC920706
Unique NameFC920706
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15116 contig Ccv1_Contig15116:15..714. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920706 vs. ExPASy Swiss-Prot
Match: LCMT2_MOUSE (Leucine carboxyl methyltransferase 2 OS=Mus musculus GN=Lcmt2 PE=2 SV=3)

HSP 1 Score: 105.145 bits (261), Expect = 4.102e-25
Identity = 69/176 (39.20%), Postives = 101/176 (57.39%), Query Frame = 3
Query:   99 QSNKAAVQATNDDASASKLSCVKKGYMKDDYIHLFVRRPVRRSPIINRGYFARWAALRRLLYQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQLQAEGKAPHLYV-ELDFIEVTSKKAALIETHGELKDKVG---VTASISQAKGEVLGDNYKLLPVDLRDIQMLNEVINLANMD 614
            Q     VQ+TND +S SK S    GY++D +  L V  PVRR+P+I+RGY+ R  A+R  +  FL+  S    +  T+ QILSLG+G D+ YF+L+A G      V E+DF +V+  KA  IE   EL+ + G   +  S S    E    +Y++L  DLR++Q L E ++ A +D
Sbjct:    7 QRRAGTVQSTNDSSSLSKRSLAAHGYVRDPFAALLVPGPVRRTPLIHRGYYVRARAVRHCVRAFLELTSALPSR--TRAQILSLGSGSDSLYFRLKAAGLLARAAVWEVDFPDVSRLKAKRIEETPELRAQTGPFKIGDSASSLCFE--SADYRILGADLRELQRLGEALHGAGLD 178          

HSP 2 Score: 30.8018 bits (68), Expect = 4.102e-25
Identity = 11/25 (44.00%), Postives = 18/25 (72.00%), Query Frame = 1
Query:  613 IQECVLIYLDPDSSRAIVGWASKTF 687
            + E VL YL+P S+ A++ WA++ F
Sbjct:  186 LAEAVLTYLEPSSATALIAWAAQRF 210          
BLAST of FC920706 vs. ExPASy Swiss-Prot
Match: LCMT2_RAT (Leucine carboxyl methyltransferase 2 OS=Rattus norvegicus GN=Lcmt2 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.132e-23
Identity = 69/178 (38.76%), Postives = 100/178 (56.18%), Query Frame = 3
Query:   99 QSNKAAVQATNDDASASKLSCVKKGYMKDDYIHLFVRRPVRRSPIINRGYFARWAALRRLLYQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQLQAEGKAPHLYV-ELDFIEVTSKKAALIETHGEL-----KDKVGVTASISQAKGEVLGDNYKLLPVDLRDIQMLNEVINLANMD 614
            Q     VQ+TND +S SK S   +GY+ D +  L V   VRR+P+I+RGY+ R  A+R  +  FLD    G  +  T+ QILSLG+G D+ YF+L+A G      V E+DF +V+  KA  IE   EL       K+G +AS    +      +Y++L  DLR++Q L E ++ A +D
Sbjct:    7 QRRTGTVQSTNDSSSLSKRSLAAQGYVSDAFAPLLVPGIVRRTPLIHRGYYVRARAVRHCVRAFLDL--TGAIRSPTRAQILSLGSGSDSLYFRLKAAGLLTRTAVWEVDFPDVSRLKAKRIEETPELCAQTGPFKIGDSASTLCFE----SSDYRILGADLRELQRLGEALDSAGLD 178          

HSP 2 Score: 27.7202 bits (60), Expect = 2.132e-23
Identity = 9/29 (31.03%), Postives = 18/29 (62.07%), Query Frame = 1
Query:  613 IQECVLIYLDPDSSRAIVGWASKTFHSCI 699
            + E VL YL+P  + A++ W ++ F + +
Sbjct:  186 LAEAVLTYLEPSRAAALIAWVAQRFPNAL 214          
BLAST of FC920706 vs. ExPASy Swiss-Prot
Match: LCMT2_HUMAN (Leucine carboxyl methyltransferase 2 OS=Homo sapiens GN=LCMT2 PE=1 SV=3)

HSP 1 Score: 95.9005 bits (237), Expect = 1.034e-22
Identity = 61/172 (35.47%), Postives = 94/172 (54.65%), Query Frame = 3
Query:  114 AVQATNDDASASKLSCVKKGYMKDDYIHLFVRRPVRRSPIINRGYFARWAALRRLLYQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQLQAEGKAPHLYV-ELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVL----GDNYKLLPVDLRDIQMLNEVINLANMD 614
            AVQ TND ++ SK S   +GY++D +  L V    RR+P+I+RGY+ R  A+R  +  FL+    G  +   + QILSLGAGFD+ YF+L+  G+     V E+DF +V  +KA   E  GE  +   +T    + +          +Y +L +DLR +Q + E +  A +D
Sbjct:   12 AVQNTNDSSALSKRSLAARGYVQDPFAALLVPGAARRAPLIHRGYYVRARAVRHCVRAFLE--QIGAPQAALRAQILSLGAGFDSLYFRLKTAGRLARAAVWEVDFPDVARRKA---ERIGETPELCALTGPFERGEPASALCFESADYCILGLDLRQLQRVEEALGAAGLD 178          

HSP 2 Score: 31.9574 bits (71), Expect = 1.034e-22
Identity = 11/29 (37.93%), Postives = 21/29 (72.41%), Query Frame = 1
Query:  613 IQECVLIYLDPDSSRAIVGWASKTFHSCI 699
            + E VL YL+P+S+ A++ WA++ F + +
Sbjct:  186 LAEAVLTYLEPESAAALIAWAAQRFPNAL 214          
BLAST of FC920706 vs. ExPASy Swiss-Prot
Match: LCMT1_CAEEL (Probable leucine carboxyl methyltransferase 1 OS=Caenorhabditis elegans GN=B0285.4 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 4.736e-19
Identity = 63/177 (35.59%), Postives = 92/177 (51.98%), Query Frame = 3
Query:   90 ADSQSNKAAVQATNDDASASKLSCVKKGYMKDDYIHLFVRRP-----VRRSPIINRGYFARWAALRRLLYQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALI-----ETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLRDIQMLNE 590
            ++S S+  +VQ TNDDA+  K    +KGY KD++I  F          RR P I+ GY+AR AA+ + +  FL+   DG+       Q++SLG GFDT +++L + G     YVE+DF  VTSKK   I         +LK      A +S    ++   NY L+  DLR    L++
Sbjct:   22 SNSVSDDYSVQRTNDDATQCKYFATQKGYWKDEFISRFANSSSNVSEARRFPEISMGYWARTAAIEKYVRDFLN-EFDGNA------QVVSLGCGFDTLFWRLVSSGAKLVKYVEVDFSSVTSKKIRHILKPIGPNSVDLKKSFESDAVVSH-HADLHAGNYHLIGADLRQANELDQ 190          

HSP 2 Score: 28.4906 bits (62), Expect = 4.736e-19
Identity = 13/29 (44.83%), Postives = 19/29 (65.52%), Query Frame = 1
Query:  580 C*MKS*IWLIWIQECVLIYLDPDSSRAIV 666
            C +   I  I+I ECVL+Y+  DSS A++
Sbjct:  195 CQLSHDIPTIFIAECVLVYMSADSSTALL 223          
BLAST of FC920706 vs. ExPASy Swiss-Prot
Match: LCMT1_CAEBR (Probable leucine carboxyl methyltransferase 1 OS=Caenorhabditis briggsae GN=CBG18087 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.291e-18
Identity = 64/183 (34.97%), Postives = 94/183 (51.37%), Query Frame = 3
Query:   90 ADSQSNKAAVQATNDDASASKLSCVKKGYMKDDYIHLFVR-----RPVRRSPIINRGYFARWAALRRLLYQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHG---ELKDKVGVTASISQAKGEVLGDNYKLLPVDLRDIQMLNEVINLANMD 614
            ++S S+  +VQ TNDDA+  K   ++KGY KDD+I  F          RR P I+ GY+AR AA+ + +  FL+   DG+       Q++S G GFDT +++L +       YVE+DF  VTSKK   I   G   +LK      A +S    ++   NY L+  DLR    L + +    +D
Sbjct:   22 SNSVSDDYSVQRTNDDATQCKYFAIQKGYWKDDFIGRFANSSANVAEARRFPEISMGYWARTAAIEKYVRGFLE-EFDGN------AQVVSFGCGFDTLFWRLVSSDAKLAKYVEVDFSSVTSKKIRHILKPGGSVDLKKSFESEAVVSH-HADLHAGNYHLIGADLRQTSELEQKLATCQLD 196          

HSP 2 Score: 23.8682 bits (50), Expect = 2.291e-18
Identity = 8/20 (40.00%), Postives = 16/20 (80.00%), Query Frame = 1
Query:  607 IWIQECVLIYLDPDSSRAIV 666
            I+I ECVL+Y+  ++S +++
Sbjct:  202 IFIAECVLVYMSSNTSSSLL 221          
BLAST of FC920706 vs. ExPASy Swiss-Prot
Match: LCMT1_ASPFU (Leucine carboxyl methyltransferase 1 OS=Aspergillus fumigatus GN=ppm1 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.148e-17
Identity = 61/163 (37.42%), Postives = 89/163 (54.60%), Query Frame = 3
Query:  117 VQATNDDASASKLSCVKKGYMKDDYIHLFVR--RPVRRSPIINRGYFARWAALRRLLYQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQL----QAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQA---KGEVL-GDNYKLLPVDLRDI 575
            VQ T++DAS S+LS V+ GY++D +  +        RR PIINRG + R  A+ RL+ +FL+  S       TKKQI+SLGAG DT  F+L     +   +  +Y E+DF   T+ K   I     L+  +G+ ++ + A    G+ L    Y L PVDLR +
Sbjct:   49 VQGTDNDASVSRLSAVEIGYLEDPFAKVLTPPGSGTRRLPIINRGTYVRTTAIDRLVARFLEGPS------QTKKQIISLGAGSDTRVFRLLSSRSSASSSDLIYHEIDFSANTAAKIKFIRAAPLLQRTLGLGSAQNVAIPDSGDALHSPTYHLHPVDLRTL 205          

HSP 2 Score: 25.7942 bits (55), Expect = 3.148e-17
Identity = 10/24 (41.67%), Postives = 15/24 (62.50%), Query Frame = 1
Query:  613 IQECVLIYLDPDSSRAIVGWASKT 684
            I EC L+YL P  +  +V + +KT
Sbjct:  244 ISECCLVYLSPREAADVVDYFTKT 267          
BLAST of FC920706 vs. ExPASy Swiss-Prot
Match: LCMT1_EMENI (Leucine carboxyl methyltransferase 1 OS=Emericella nidulans GN=ppm1 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.151e-17
Identity = 65/182 (35.71%), Postives = 94/182 (51.65%), Query Frame = 3
Query:   90 ADSQSNK-AAVQATNDDASASKLSCVKKGYMKDDYIHLF--VRRPVRRSPIINRGYFARWAALRRLLYQFLDCGSDGDKKCH-TKKQILSLGAGFDTTYFQLQAEGKA-PHLYVELDFIEVTSKKAALIETHGELKDKVGVT-ASISQAKGEVLGDNYKLLPVDLRDIQMLNEVINLANMDP 617
            + S  NK   VQ T++DAS S+LS V+ GY++D +      + + +RR PIINRG + R  A+ +L+  FL   +D D      KKQI+SLGAG DT  F+L +   A   +Y E+DF    + K   I+    L+  +G +  SIS    E+    Y +  VDLR +    E       DP
Sbjct:   30 SSSSGNKDRVVQGTDNDASVSRLSAVELGYLEDPFARALTPMGQEMRRLPIINRGTYVRTTAIDQLVASFLGLKADSDPTWKLKKKQIISLGAGSDTRVFRLLSLRPALDIIYHEIDFAVNNTAKIKAIQGTPLLQRVLGQSQVSISNEGDELHSPAYHIHAVDLRTLAQKGEGDKSTGQDP 211          

HSP 2 Score: 24.6386 bits (52), Expect = 3.151e-17
Identity = 9/24 (37.50%), Postives = 15/24 (62.50%), Query Frame = 1
Query:  613 IQECVLIYLDPDSSRAIVGWASKT 684
            + EC LIYL P+ +  +V + + T
Sbjct:  228 LSECCLIYLSPNDAAGVVRYFTHT 251          
BLAST of FC920706 vs. ExPASy Swiss-Prot
Match: LCMT1_HUMAN (Leucine carboxyl methyltransferase 1 OS=Homo sapiens GN=LCMT1 PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 5.989e-17
Identity = 62/173 (35.84%), Postives = 90/173 (52.02%), Query Frame = 3
Query:  117 VQATNDDASASKLSCVKKGYMKDDYIHLFVR-RPVRRSPIINRGYFARWAALRRLLYQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTAS--ISQAKGEVL-GDNYKLLPVDLRDIQMLNEVINLANMDPRM 623
            V+ T +DAS  K   V  GY  D YI  FVR    R++P INRGYFAR   + +L+  FL        +CH   QI++LGAG DTT+++L+ E   P  Y E+DF  + ++K   I+    L   +    S    Q  G +L    Y ++  DLRD+  L E +   NM+ ++
Sbjct:   26 VRGTCEDASLCKRFAVSIGYWHDPYIQHFVRLSKERKAPEINRGYFARVHGVSQLIKAFLR-----KTECHC--QIVNLGAGMDTTFWRLKDEDLLPSKYFEVDFPMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVIGADLRDLSELEEKLKKCNMNTQL 191          
BLAST of FC920706 vs. ExPASy Swiss-Prot
Match: LCMT1_RAT (Leucine carboxyl methyltransferase 1 OS=Rattus norvegicus GN=Lcmt1 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.822e-17
Identity = 60/181 (33.15%), Postives = 95/181 (52.49%), Query Frame = 3
Query:  117 VQATNDDASASKLSCVKKGYMKDDYI-HLFVRRPVRRSPIINRGYFARWAALRRLLYQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKK-----------AALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLRDIQMLNEVINLANMDPRM 623
            V+ T +DAS  K   V  G+  D YI HL  +   R++P INRGYFAR   + +L+  FL       +K   + QIL+LGAG DTT+++L+ EG  P+ Y E+DF  + ++K             ++E H E  D + + + +  +K       Y ++  DLRD+  L E +   NM+ ++
Sbjct:   24 VRGTCEDASLCKRFAVSIGHWHDPYIEHLVRQSKERKAPEINRGYFARVHGVSQLIKAFL-------RKTECRCQILNLGAGMDTTFWKLKDEGLLPNKYFEVDFPMIVTRKLHTIKNKPLLFRPIMELHPE--DTLQIDSHMLDSK------RYAIIGADLRDLSELEEKLKKCNMNTQL 189          
BLAST of FC920706 vs. ExPASy Swiss-Prot
Match: LCMT1_GIBZE (Leucine carboxyl methyltransferase 1 OS=Gibberella zeae GN=PPM1 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.742e-16
Identity = 57/130 (43.85%), Postives = 72/130 (55.38%), Query Frame = 3
Query:   90 ADSQSNKAAVQATNDDASASKLSCVKKGYMKDDYIHLFVRR----PVRRSPIINRGYFARWAALRRLLYQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQLQAEGKAPHL-YVELDFIEVTSKKAALIE 464
            + S ++ + +Q T+ DAS S+LS V  GY+ D Y   FVR       RR PIINRG +AR  +L  L+  FL           T KQI+SLGAG DT  F+L A    P L Y ELDF  VTSKK   ++
Sbjct:   31 SSSATHDSTIQGTDTDASVSRLSAVDLGYLDDPYAQYFVRSSAGPAARRLPIINRGTYARTISLDTLIESFLSADQSTGPD-STPKQIVSLGAGTDTRPFRLFASKARPGLVYHELDFEVVTSKKLRTVQ 159          
The following BLAST results are available for this feature:
BLAST of FC920706 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
LCMT2_MOUSE4.102e-2539.20Leucine carboxyl methyltransferase 2 OS=Mus muscul... [more]
LCMT2_RAT2.132e-2338.76Leucine carboxyl methyltransferase 2 OS=Rattus nor... [more]
LCMT2_HUMAN1.034e-2235.47Leucine carboxyl methyltransferase 2 OS=Homo sapie... [more]
LCMT1_CAEEL4.736e-1935.59Probable leucine carboxyl methyltransferase 1 OS=C... [more]
LCMT1_CAEBR2.291e-1834.97Probable leucine carboxyl methyltransferase 1 OS=C... [more]
LCMT1_ASPFU3.148e-1737.42Leucine carboxyl methyltransferase 1 OS=Aspergillu... [more]
LCMT1_EMENI3.151e-1735.71Leucine carboxyl methyltransferase 1 OS=Emericella... [more]
LCMT1_HUMAN5.989e-1735.84Leucine carboxyl methyltransferase 1 OS=Homo sapie... [more]
LCMT1_RAT7.822e-1733.15Leucine carboxyl methyltransferase 1 OS=Rattus nor... [more]
LCMT1_GIBZE1.742e-1643.85Leucine carboxyl methyltransferase 1 OS=Gibberella... [more]

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Properties
Property NameValue
Genbank descriptionC32012A06EF RVDevelop1 Citrus clementina cDNA clone C32012A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920706 ID=FC920706; Name=FC920706; organism=Citrus clementina; type=EST; length=700bp
AAAAATTCGAAAGATCATTTTGATCGCTGTCCTCCGAACACCTCGAATCG
CCTCTCGCAAACGGTTGTTTGAATATGGCCTATCCCGTTGCTGATTCACA
AAGTAATAAAGCTGCCGTTCAAGCCACAAACGACGACGCTTCTGCAAGTA
AACTATCATGTGTGAAGAAGGGATATATGAAAGATGATTACATCCATTTA
TTTGTAAGAAGACCTGTGAGGAGATCTCCCATAATCAACCGAGGTTACTT
TGCTCGTTGGGCTGCTCTTAGAAGGCTTCTCTATCAGTTTCTTGATTGTG
GAAGTGACGGTGATAAAAAATGTCATACAAAGAAGCAAATATTATCACTC
GGAGCTGGCTTTGATACCACATATTTTCAATTGCAGGCTGAGGGAAAAGC
GCCGCATTTATATGTAGAACTGGATTTCATAGAGGTAACTAGTAAAAAGG
CAGCACTTATTGAAACTCATGGCGAATTGAAGGACAAAGTTGGTGTTACA
GCATCAATCTCGCAAGCTAAAGGAGAAGTGCTTGGTGATAATTACAAGCT
ACTCCCTGTGGATTTGAGGGACATACAAATGTTAAATGAAGTCATAAATT
TGGCTAATATGGATCCAAGAATGTGTTTTAATATACTTGGATCCAGATTC
AAGCCGTGCTATAGTTGGTTGGGCTTCAAAAACATTTCACAGCTGTATTT
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