FC920710

Overview
NameFC920710
Unique NameFC920710
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length674
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14181 contig Ccv1_Contig14181:1..675. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC920710 vs. ExPASy Swiss-Prot
Match: S12A6_MOUSE (Solute carrier family 12 member 6 OS=Mus musculus GN=Slc12a6 PE=1 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.456e-49
Identity = 103/223 (46.19%), Postives = 138/223 (61.88%), Query Frame = 3 
Query:    6 LVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGXXXXXXXXXXXYVISVLLFGAAXXXXXXXXXXXXXXX-------IAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGR-EPHIATFFTAFICIGCVIIGNLDLITPTITMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLLGSVFCIVIMFLISWSFTVVSLALA 650
            LVG+FFP+VTGIMAGSNRS  LKD Q+SIPIG           Y+ +V+LFGA                       ++WP P VI IG   ST GA LQSLTGAPRLL AIA D+I+P L  F  ++   EP  A   TA I    ++I +LDL+ P ++MFFL+CY  VNL+C L  LL  P+WRPR++++HW+LS +G   C+ +MF+ SW + +V++ +A
Sbjct:  488 LVGIFFPSVTGIMAGSNRSGDLKDAQKSIPIGTILAILTTSFVYLSNVVLFGACIEGVVLRDKFGDAVKGNLVVGTLSWPSPWVIVIGSFFSTCGAGLQSLTGAPRLLQAIAKDNIIPFLRVFGHSKANGEPTWALLLTAAIAELGILIASLDLVAPILSMFFLMCYLFVNLACALQTLLRTPNWRPRFRYYHWALSFMGMSICLALMFISSWYYAIVAMVIA 710
[Close]
BLAST of FC920710 vs. ExPASy Swiss-Prot
Match: S12A6_HUMAN (Solute carrier family 12 member 6 OS=Homo sapiens GN=SLC12A6 PE=1 SV=2)

HSP 1 Score: 196.052 bits (497), Expect = 1.456e-49
Identity = 103/223 (46.19%), Postives = 138/223 (61.88%), Query Frame = 3 
Query:    6 LVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGXXXXXXXXXXXYVISVLLFGAAXXXXXXXXXXXXXXX-------IAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGR-EPHIATFFTAFICIGCVIIGNLDLITPTITMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLLGSVFCIVIMFLISWSFTVVSLALA 650
            LVG+FFP+VTGIMAGSNRS  LKD Q+SIPIG           Y+ +V+LFGA                       ++WP P VI IG   ST GA LQSLTGAPRLL AIA D+I+P L  F  ++   EP  A   TA I    ++I +LDL+ P ++MFFL+CY  VNL+C L  LL  P+WRPR++++HW+LS +G   C+ +MF+ SW + +V++ +A
Sbjct:  488 LVGIFFPSVTGIMAGSNRSGDLKDAQKSIPIGTILAILTTSFVYLSNVVLFGACIEGVVLRDKFGDAVKGNLVVGTLSWPSPWVIVIGSFFSTCGAGLQSLTGAPRLLQAIAKDNIIPFLRVFGHSKANGEPTWALLLTAAIAELGILIASLDLVAPILSMFFLMCYLFVNLACALQTLLRTPNWRPRFRYYHWALSFMGMSICLALMFISSWYYAIVAMVIA 710
[Close]
BLAST of FC920710 vs. ExPASy Swiss-Prot
Match: S12A4_RAT (Solute carrier family 12 member 4 OS=Rattus norvegicus GN=Slc12a4 PE=1 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.484e-49
Identity = 102/223 (45.74%), Postives = 136/223 (60.99%), Query Frame = 3 
Query:    6 LVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGXXXXXXXXXXXYVISVLLFGAAXXXXXXXXXXXXXXX-------IAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGR-EPHIATFFTAFICIGCVIIGNLDLITPTITMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLLGSVFCIVIMFLISWSFTVVSLALA 650
            LVG+FFP+VTGIMAGSNRS  L+D Q+SIP+G           Y  SV+LFGA                       +AWP P VI +G   ST GA LQSLTGAPRLL AIA D+I+P L  F   +   EP  A   TA I    ++I +LD++ P ++MFFL+CY  VNL+C +  LL  P+WRPR+K++HW+LS LG   C+ +MF+ SW + +V++ +A
Sbjct:  423 LVGIFFPSVTGIMAGSNRSGDLRDAQKSIPVGTILAIVTTSLVYFSSVILFGACIEGVVLRDKYGDGVSRNLVVGTLAWPSPWVIVVGSFFSTCGAGLQSLTGAPRLLQAIAKDNIIPFLRVFGHGKANGEPTWALLLTALIAELGILIASLDMVAPILSMFFLMCYLFVNLACAVQTLLRTPNWRPRFKYYHWALSFLGMSLCLALMFVSSWYYALVAMVIA 645
[Close]
BLAST of FC920710 vs. ExPASy Swiss-Prot
Match: S12A4_MOUSE (Solute carrier family 12 member 4 OS=Mus musculus GN=Slc12a4 PE=1 SV=2)

HSP 1 Score: 194.897 bits (494), Expect = 3.245e-49
Identity = 102/223 (45.74%), Postives = 136/223 (60.99%), Query Frame = 3 
Query:    6 LVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGXXXXXXXXXXXYVISVLLFGAAXXXXXXXXXXXXXXX-------IAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGR-EPHIATFFTAFICIGCVIIGNLDLITPTITMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLLGSVFCIVIMFLISWSFTVVSLALA 650
            LVG+FFP+VTGIMAGSNRS  L+D Q+SIP+G           Y  SV+LFGA                       +AWP P VI +G   ST GA LQSLTGAPRLL AIA D+I+P L  F   +   EP  A   TA I    ++I +LD++ P ++MFFL+CY  VNL+C +  LL  P+WRPR+K++HW+LS LG   C+ +MF+ SW + +V++ +A
Sbjct:  423 LVGIFFPSVTGIMAGSNRSGDLRDAQKSIPVGTILAIVTTSLVYFSSVILFGACIEGVVLRDKYGDGVSRNLVVGTLAWPSPWVIVVGSFFSTCGAGLQSLTGAPRLLQAIAKDNIIPFLRVFGHGKANGEPTWALLLTALIAELGILIASLDMVAPILSMFFLMCYLFVNLACAVQTLLRTPNWRPRFKYYHWTLSFLGMSLCLALMFVSSWYYALVAMLIA 645
[Close]
BLAST of FC920710 vs. ExPASy Swiss-Prot
Match: S12A4_RABIT (Solute carrier family 12 member 4 OS=Oryctolagus cuniculus GN=SLC12A4 PE=1 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 4.238e-49
Identity = 102/223 (45.74%), Postives = 136/223 (60.99%), Query Frame = 3 
Query:    6 LVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGXXXXXXXXXXXYVISVLLFGAAXXXXXXXXXXXXXXX-------IAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGR-EPHIATFFTAFICIGCVIIGNLDLITPTITMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLLGSVFCIVIMFLISWSFTVVSLALA 650
            LVG+FFP+VTGIMAGSNRS  L+D Q+SIP+G           Y  SV+LFGA                       +AWP P VI +G   ST GA LQSLTGAPRLL AIA D+I+P L  F   +   EP  A   TA I    ++I +LD++ P ++MFFL+CY  VNL+C +  LL  P+WRPR+K++HW+LS LG   C+ +MF+ SW + +V++ +A
Sbjct:  423 LVGIFFPSVTGIMAGSNRSGDLRDAQKSIPVGTILAIVTTSLVYFSSVVLFGACIEGVVLRDKYGDGVSRNLVVGTLAWPSPWVIVVGSFFSTCGAGLQSLTGAPRLLQAIAKDNIIPFLRVFGHGKANGEPTWALLLTALIAELGILIASLDMVAPILSMFFLMCYLFVNLACAVQTLLRTPNWRPRFKYYHWALSFLGMSLCLALMFVSSWYYALVAMLIA 645
[Close]
BLAST of FC920710 vs. ExPASy Swiss-Prot
Match: S12A7_RAT (Solute carrier family 12 member 7 OS=Rattus norvegicus GN=Slc12a7 PE=2 SV=2)

HSP 1 Score: 194.126 bits (492), Expect = 5.535e-49
Identity = 102/223 (45.74%), Postives = 133/223 (59.64%), Query Frame = 3 
Query:    6 LVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGXXXXXXXXXXXYVISVLLFGAAXXXXXXXXXXXXXXX-------IAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGR-EPHIATFFTAFICIGCVIIGNLDLITPTITMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLLGSVFCIVIMFLISWSFTVVSLALA 650
            LVG++FP+VTGIMAGSNRS  LKD Q+SIP G           Y+  ++LFGA                       +AWP P VI IG   ST GA LQSLTGAPRLL AIA D I+P L  F   +   EP  A   TA IC   ++I +LD + P ++MFFL+CY  VNL+C +  LL  P+WRPR+KF+HW+LS LG   C+ +MF+ SW + + ++ +A
Sbjct:  423 LVGIYFPSVTGIMAGSNRSGDLKDAQKSIPTGTILAIVTTSFIYLSCIVLFGACIEGVVLRDKFGEALQGNLVIGMLAWPSPWVIVIGSFFSTCGAGLQSLTGAPRLLQAIARDGIIPFLQVFGHGKANGEPTWALLLTALICETGILIASLDSVAPILSMFFLMCYMFVNLACAVQTLLRTPNWRPRFKFYHWTLSFLGMSLCLALMFICSWYYALFAMLIA 645
[Close]
BLAST of FC920710 vs. ExPASy Swiss-Prot
Match: S12A7_MOUSE (Solute carrier family 12 member 7 OS=Mus musculus GN=Slc12a7 PE=1 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 5.535e-49
Identity = 102/223 (45.74%), Postives = 133/223 (59.64%), Query Frame = 3 
Query:    6 LVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGXXXXXXXXXXXYVISVLLFGAAXXXXXXXXXXXXXXX-------IAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGR-EPHIATFFTAFICIGCVIIGNLDLITPTITMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLLGSVFCIVIMFLISWSFTVVSLALA 650
            LVG++FP+VTGIMAGSNRS  LKD Q+SIP G           Y+  ++LFGA                       +AWP P VI IG   ST GA LQSLTGAPRLL AIA D I+P L  F   +   EP  A   TA IC   ++I +LD + P ++MFFL+CY  VNL+C +  LL  P+WRPR+KF+HW+LS LG   C+ +MF+ SW + + ++ +A
Sbjct:  423 LVGIYFPSVTGIMAGSNRSGDLKDAQKSIPTGTILAIVTTSFIYLSCIVLFGACIEGVVLRDKFGEALQGNLVIGMLAWPSPWVIVIGSFFSTCGAGLQSLTGAPRLLQAIARDGIIPFLQVFGHGKANGEPTWALLLTALICETGILIASLDSVAPILSMFFLMCYMFVNLACAVQTLLRTPNWRPRFKFYHWTLSFLGMSLCLALMFICSWYYALFAMLIA 645
[Close]
BLAST of FC920710 vs. ExPASy Swiss-Prot
Match: S12A4_HUMAN (Solute carrier family 12 member 4 OS=Homo sapiens GN=SLC12A4 PE=1 SV=2)

HSP 1 Score: 194.126 bits (492), Expect = 5.535e-49
Identity = 103/223 (46.19%), Postives = 136/223 (60.99%), Query Frame = 3 
Query:    6 LVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGXXXXXXXXXXXYVISVLLFGAAXXXXXXXXXXXXXXX-------IAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAE-GREPHIATFFTAFICIGCVIIGNLDLITPTITMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLLGSVFCIVIMFLISWSFTVVSLALA 650
            LVG+FFP+VTGIMAGSNRS  L+D Q+SIP+G           Y  SV+LFGA                       +AWP P VI IG   ST GA LQSLTGAPRLL AIA D+I+P L  F   +   EP  A   TA I    ++I +LD++ P ++MFFL+CY  VNL+C +  LL  P+WRPR+K++HW+LS LG   C+ +MF+ SW + +V++ +A
Sbjct:  423 LVGIFFPSVTGIMAGSNRSGDLRDAQKSIPVGTILAIITTSLVYFSSVVLFGACIEGVVLRDKYGDGVSRNLVVGTLAWPSPWVIVIGSFFSTCGAGLQSLTGAPRLLQAIAKDNIIPFLRVFGHGKVNGEPTWALLLTALIAELGILIASLDMVAPILSMFFLMCYLFVNLACAVQTLLRTPNWRPRFKYYHWALSFLGMSLCLALMFVSSWYYALVAMLIA 645
[Close]
BLAST of FC920710 vs. ExPASy Swiss-Prot
Match: S12A7_RABIT (Solute carrier family 12 member 7 OS=Oryctolagus cuniculus GN=SLC12A7 PE=1 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.610e-48
Identity = 101/223 (45.29%), Postives = 133/223 (59.64%), Query Frame = 3 
Query:    6 LVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGXXXXXXXXXXXYVISVLLFGAAXXXXXXXXXXXXXXX-------IAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGR-EPHIATFFTAFICIGCVIIGNLDLITPTITMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLLGSVFCIVIMFLISWSFTVVSLALA 650
            LVG++FP+VTGIMAGSNRS  LKD Q+SIP G           Y+  ++LFGA                       +AWP P VI IG   ST GA LQSLTGAPRLL AIA D I+P L  F   +   EP  A   TA IC   ++I +LD + P ++MFFL+CY  VNL+C +  LL  P+WRPR+K++HW+LS LG   C+ +MF+ SW + + ++ +A
Sbjct:  447 LVGIYFPSVTGIMAGSNRSGDLKDAQKSIPTGTILAIVTTSFIYLSCIVLFGACIEGVVLRDKFGEALQGNLVIGMLAWPSPWVIVIGSFFSTCGAGLQSLTGAPRLLQAIARDGIVPFLQVFGHGKANGEPTWALLLTALICETGILIASLDSVAPILSMFFLMCYMFVNLACAVQTLLRTPNWRPRFKYYHWTLSFLGMSLCLALMFICSWYYALFAMLIA 669
[Close]
BLAST of FC920710 vs. ExPASy Swiss-Prot
Match: S12A5_RAT (Solute carrier family 12 member 5 OS=Rattus norvegicus GN=Slc12a5 PE=1 SV=2)

HSP 1 Score: 192.2 bits (487), Expect = 2.103e-48
Identity = 101/223 (45.29%), Postives = 135/223 (60.54%), Query Frame = 3 
Query:    6 LVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGXXXXXXXXXXXYVISVLLFGAAXXXXXXXXXXXXXXX-------IAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGR-EPHIATFFTAFICIGCVIIGNLDLITPTITMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLLGSVFCIVIMFLISWSFTVVSLALA 650
            LVG++FP+VTGIMAGSNRS  L+D Q+SIP G           Y+ SV+LFGA                       +AWP P VI IG   ST GA LQSLTGAPRLL AI+ D I+P L  F   +   EP  A   TA IC   ++I +LD + P ++MFFL+CY  VNL+C +  LL  P+WRPR++++HW+LS LG   C+ +MF+ SW + +V++ +A
Sbjct:  426 LVGIYFPSVTGIMAGSNRSGDLRDAQKSIPTGTILAIATTSAVYISSVVLFGACIEGVVLRDKFGEAVNGNLVVGTLAWPSPWVIVIGSFFSTCGAGLQSLTGAPRLLQAISRDGIVPFLQVFGHGKANGEPTWALLLTACICEIGILIASLDEVAPILSMFFLMCYMFVNLACAVQTLLRTPNWRPRFRYYHWTLSFLGMSLCLALMFICSWYYALVAMLIA 648
The following BLAST results are available for this feature:
BLAST of FC920710 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
S12A6_MOUSE1.456e-4946.19Solute carrier family 12 member 6 OS=Mus musculus ... [more]
S12A6_HUMAN1.456e-4946.19Solute carrier family 12 member 6 OS=Homo sapiens ... [more]
S12A4_RAT2.484e-4945.74Solute carrier family 12 member 4 OS=Rattus norveg... [more]
S12A4_MOUSE3.245e-4945.74Solute carrier family 12 member 4 OS=Mus musculus ... [more]
S12A4_RABIT4.238e-4945.74Solute carrier family 12 member 4 OS=Oryctolagus c... [more]
S12A7_RAT5.535e-4945.74Solute carrier family 12 member 7 OS=Rattus norveg... [more]
S12A7_MOUSE5.535e-4945.74Solute carrier family 12 member 7 OS=Mus musculus ... [more]
S12A4_HUMAN5.535e-4946.19Solute carrier family 12 member 4 OS=Homo sapiens ... [more]
S12A7_RABIT1.610e-4845.29Solute carrier family 12 member 7 OS=Oryctolagus c... [more]
S12A5_RAT2.103e-4845.29Solute carrier family 12 member 5 OS=Rattus norveg... [more]

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Properties
Property NameValue
Genbank descriptionC32012A11EF RVDevelop1 Citrus clementina cDNA clone C32012A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920710 ID=FC920710; Name=FC920710; organism=Citrus clementina; type=EST; length=674bp
ATGCATTGGTCGGTCTATTTTTTCCAGCTGTAACGGGAATCATGGCAGGG
TCAAATCGTTCAGCCTCACTGAAAGATACCCAACGTTCAATCCCCATTGG
AACTTTGGCTGCAACTCTTACAACTACTGCATTATATGTGATTTCTGTGT
TGTTATTTGGAGCGGCGGCAACTAGAGAGGAGCTTTTGACAGACAGGCTT
CTTACTGCTACAATCGCTTGGCCTTTCCCAGCAGTTATTCACATAGGGAT
TATTCTTTCAACCTTAGGTGCTGCTCTTCAGAGCCTGACAGGTGCTCCGC
GCTTGCTTGCAGCAATAGCCAATGATGATATTCTACCTGTTCTTAACTAC
TTTAAGGTTGCAGAGGGGCGTGAGCCACACATAGCTACATTCTTCACGGC
ATTCATCTGTATCGGATGTGTCATAATTGGGAATCTGGACCTTATCACAC
CGACAATAACAATGTTTTTTCTTCTGTGTTATTCGGGTGTGAACTTATCT
TGCTTCCTTCTGGATCTTCTCGATGCTCCTAGTTGGCGTCCTCGGTGGAA
ATTTCACCACTGGAGCCTATCACTTCTTGGATCTGTTTTTTGTATTGTGA
TCATGTTCTTGATCTCTTGGTCATTTACGGTGGTGTCTCTGGCCCTTGCA
GCCTCATATATTATTACGTGTGCC
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