FC920719

Overview
NameFC920719
Unique NameFC920719
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length672
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920719_ssr130 microsatellite FC920719_ssr130:130..143. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14183 contig Ccv1_Contig14183:1..672. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920719 vs. ExPASy Swiss-Prot
Match: KCS1_ARATH (3-ketoacyl-CoA synthase 1 OS=Arabidopsis thaliana GN=KCS1 PE=1 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.600e-40
Identity = 88/177 (49.72%), Postives = 118/177 (66.67%), Query Frame = 3
Query:  141 ENMDRVEIDRERLTAEMAFKEDSSAVIKIRQRLPDFLQSVKLKYVKLGYGYSCNFATIIMFVLIVPLSIATVIQLSGLKLDRILELLSKEKLQLNMIIDAASDQLAVSTMLFFLFGLYWSKRSSPVYLVDFSCYKPADERKMSMEAFLKMXXXXXXXXXXXXXXXKRIASRASVGDE 671
            E  + +E+DRERLTAEMAF++ SSAVI+IR+RLPD L SVKLKYVKLG   SCN  TI+ F++I+PL+   ++QL+GL  D   EL S + +QL+      + +L     L F+  LY + RS PVYLVDFSCYKP DERK+S+++FL M               +RI++RA +GDE
Sbjct:    2 ERTNSIEMDRERLTAEMAFRDSSSAVIRIRRRLPDLLTSVKLKYVKLGLHNSCNVTTILFFLIILPLTGTVLVQLTGLTFDTFSELWSNQAVQLD-----TATRLTCLVFLSFVLTLYVANRSKPVYLVDFSCYKPEDERKISVDSFLTMTEENGSFTDDTVQFQQRISNRAGLGDE 173          
BLAST of FC920719 vs. ExPASy Swiss-Prot
Match: KCS10_ARATH (3-ketoacyl-CoA synthase 10 OS=Arabidopsis thaliana GN=FDH PE=1 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.364e-15
Identity = 50/155 (32.26%), Postives = 77/155 (49.68%), Query Frame = 3
Query:  219 IKIRQRLPDFLQSVKLKYVKLGYGYSCN----FATIIMFVLIVPLSIATVIQLSGLKLDRILELLSKEKLQLNMIIDAASDQLAVSTMLFFLFGLYWSKRSSPVYLVDFSCYKPADERKMSMEAFLKMXXXXXXXXXXXXXXXKRIASRASVGDE 671
            +++R+RLPDFLQSV LKYVKLGY Y  N     ATI + VL+    + +               LS+E++   +     +  +    +      +Y+  R   VYL+DF+CYKP+DE K++ E F+++               KRI   + +GDE
Sbjct:   33 VRVRRRLPDFLQSVNLKYVKLGYHYLINHAVYLATIPVLVLVFSAEVGS---------------LSREEIWKKLWDYDLATVIGFFGVFVLTACVYFMSRPRSVYLIDFACYKPSDEHKVTKEEFIELARKSGKFDEETLGFKKRILQASGIGDE 172          
BLAST of FC920719 vs. ExPASy Swiss-Prot
Match: KCS11_ARATH (3-ketoacyl-CoA synthase 11 OS=Arabidopsis thaliana GN=KCS11 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.154e-14
Identity = 50/146 (34.25%), Postives = 75/146 (51.37%), Query Frame = 3
Query:  231 QRLPDFLQSVKLKYVKLGYGYSCNFATIIMFVLIVPLSIATVIQLSGLKLDRILELLSKEKLQLNMIIDAASDQLAVSTMLFFLFGLYWSKRSSPVYLVDFSCYKPADERKMSMEAFLKMXXXXXXXXXXXXXXXKRIASRASVGD 668
            + LPDF +SVKLKYVKLGY Y     T  M++ + PL +    Q+S   +  +  L   E LQ N+I       +  S +L FL  +Y+  R  PVYLV+FSC+KP + RK + + F+                 ++I  R+ +G+
Sbjct:   15 RNLPDFKKSVKLKYVKLGYHY---LITHGMYLFLSPLVLVIAAQISTFSVTDLRSLW--EHLQYNLI-----SVVVCSMLLVFLMTIYFMTRPRPVYLVNFSCFKPDESRKCTKKIFMDRSKLTGSFTEENLEFQRKILQRSGLGE 150          
BLAST of FC920719 vs. ExPASy Swiss-Prot
Match: KCS4_ARATH (3-ketoacyl-CoA synthase 4 OS=Arabidopsis thaliana GN=KCS4 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.358e-14
Identity = 55/159 (34.59%), Postives = 79/159 (49.69%), Query Frame = 3
Query:  204 DSSAVIKIRQR--LPDFLQSVKLKYVKLGYGY-SCNFATIIMFVLIVPLSIATVIQLSGLKLDRILELLSKEKLQLNMIIDAASDQLAVSTMLFFLFGLYWSKRSSPVYLVDFSCYKPADERKMSMEAFLKMXXXXXXXXXXXXXXXKRIASRASVGDE 671
            D S  ++IRQ   LPDFLQSV LKYVKLGY Y   N  T+ +F    PL++   ++ S +  D + +L     LQ N++       +  S +L F   +Y   R  PVYLVDFSCY P D  K     F++                ++I  R+ +G++
Sbjct:   16 DGSVGVQIRQTRMLPDFLQSVNLKYVKLGYHYLISNLLTLCLF----PLAVVISVEASQMNPDDLKQLWI--HLQYNLV-----SIIICSAILVFGLTVYVMTRPRPVYLVDFSCYLPPDHLKAPYARFMEHSRLTGDFDDSALEFQRKILERSGLGED 163          
BLAST of FC920719 vs. ExPASy Swiss-Prot
Match: KCS9_ARATH (3-ketoacyl-CoA synthase 9 OS=Arabidopsis thaliana GN=KCS9 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.195e-11
Identity = 45/148 (30.41%), Postives = 74/148 (50.00%), Query Frame = 3
Query:  228 RQRLPDFLQSVKLKYVKLGYGYSCNFATIIMFVLIVPLSIATVIQLSGLKLDRILELLSKEKLQLNMIIDAASDQLAVSTMLFFLFGLYWSKRSSPVYLVDFSCYKPADERKMSMEAFLKMXXXXXXXXXXXXXXXKRIASRASVGDE 671
            R++LP+FLQSV +KYVKLGY Y     T +  + +VPL    V ++S L  D + ++     LQ N++       + +S +  F   +Y   R   VYLVD+SCY P +  ++  + F+                 ++I  R+ +G+E
Sbjct:   22 RRKLPNFLQSVNMKYVKLGYHY---LITHLFKLCLVPLMAVLVTEISRLTTDDLYQIWL--HLQYNLVA-----FIFLSALAIFGSTVYIMSRPRSVYLVDYSCYLPPESLQVKYQKFMDHSKLIEDFNESSLEFQRKILERSGLGEE 159          
BLAST of FC920719 vs. ExPASy Swiss-Prot
Match: KCS5_ARATH (3-ketoacyl-CoA synthase 5 OS=Arabidopsis thaliana GN=KCS5 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.661e-11
Identity = 46/146 (31.51%), Postives = 72/146 (49.32%), Query Frame = 3
Query:  237 LPDFLQSVKLKYVKLGYGYSC-NFATIIMFVLIVPLSIATVIQLSGLKLDRILELLSKEKLQLNMIIDAASDQLAVSTMLFFLFGLYWSKRSSPVYLVDFSCYKPADERKMSMEAFLKMXXXXXXXXXXXXXXXKRIASRASVGDE 671
            + DF  SVKLKYVKLGY Y   NF T+    L++P+     I+L  +  + IL +L+    +L  I       L  S ++ F+  +Y+  +   VYLVD+SCYKP    ++   +F++                 RI  R+ +G+E
Sbjct:    1 MSDFSSSVKLKYVKLGYQYLINNFLTL----LLIPVIATVAIELLRMGPEEILSVLNSLHFELLHI-------LCSSFLIIFVSTVYFMSKPRTVYLVDYSCYKPPVTCRVPFSSFMEHSRLILKDNPKSVEFQMRILERSGLGEE 135          
The following BLAST results are available for this feature:
BLAST of FC920719 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
KCS1_ARATH1.600e-4049.723-ketoacyl-CoA synthase 1 OS=Arabidopsis thaliana ... [more]
KCS10_ARATH1.364e-1532.263-ketoacyl-CoA synthase 10 OS=Arabidopsis thaliana... [more]
KCS11_ARATH1.154e-1434.253-ketoacyl-CoA synthase 11 OS=Arabidopsis thaliana... [more]
KCS4_ARATH3.358e-1434.593-ketoacyl-CoA synthase 4 OS=Arabidopsis thaliana ... [more]
KCS9_ARATH1.195e-1130.413-ketoacyl-CoA synthase 9 OS=Arabidopsis thaliana ... [more]
KCS5_ARATH2.661e-1131.513-ketoacyl-CoA synthase 5 OS=Arabidopsis thaliana ... [more]
back to top
Properties
Property NameValue
Genbank descriptionC32012B09EF RVDevelop1 Citrus clementina cDNA clone C32012B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920719 ID=FC920719; Name=FC920719; organism=Citrus clementina; type=EST; length=672bp
TATAAACTATATCAAGGCCTGTAGAGTTTGTTTTCGTATTCAGCGATTGT
TTTTGTTAGAGGGTACAGTTTATTATTAGTTCAGCTCCTTTACATTCCCT
TGTTCATAAGTTTAACAAAAAAAGAACACAGAGAGAGAGAGAGAACATGG
ATAGAGTAGAGATTGATAGAGAGAGATTGACGGCGGAGATGGCCTTTAAA
GAGGACTCCTCCGCCGTCATCAAGATTCGACAACGCTTGCCGGATTTTCT
ACAATCCGTGAAGCTCAAGTATGTGAAGCTAGGATATGGGTACTCATGCA
ATTTTGCAACAATTATCATGTTTGTTCTTATAGTACCTCTGTCCATAGCT
ACCGTAATACAGCTCAGCGGTCTGAAATTGGACCGGATTCTGGAGTTGTT
ATCTAAGGAAAAGCTTCAACTCAACATGATCATTGATGCAGCCAGTGATC
AGTTAGCAGTTTCAACAATGTTATTTTTCCTCTTCGGCCTTTACTGGTCG
AAGCGTTCGAGTCCAGTTTATCTCGTGGACTTCTCGTGTTACAAACCGGC
TGATGAACGTAAAATGTCTATGGAGGCGTTCTTGAAAATGAGTGAAGAAA
GCAGCTTCTTCCAAGAAGAGTCGCTGCAGTTCCAGAAGCGCATAGCGAGC
CGGGCAAGTGTTGGTGACGAAC
back to top