FC920729

Overview
NameFC920729
Unique NameFC920729
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length582
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12478 contig Ccv1_Contig12478:26..606. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920729 vs. ExPASy Swiss-Prot
Match: ERDL5_ARATH (Sugar transporter ERD6-like 5 OS=Arabidopsis thaliana GN=At1g54730 PE=2 SV=2)

HSP 1 Score: 228.409 bits (581), Expect = 1.973e-59
Identity = 110/145 (75.86%), Postives = 128/145 (88.28%), Query Frame = 2
Query:  146 VVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIADITPKNLRGGFTTVHQLMICIGVSMTYL 580
            ++L+TFVAV GS+VFGSAIGYSSP QS +T +L LSVAEYSLFGSILTIGAMIGA MSG+IAD IGRR TMGFS++ CI+GW+ I  SK A WLD+GR LVGYGMG+ S+VVPVYIA+ITPK LRGGFTTVHQL+IC+GVS+TYL
Sbjct:   32 LLLTTFVAVSGSFVFGSAIGYSSPVQSDLTKELNLSVAEYSLFGSILTIGAMIGAAMSGRIADMIGRRATMGFSEMFCILGWLAIYLSKVAIWLDVGRFLVGYGMGVFSFVVPVYIAEITPKGLRGGFTTVHQLLICLGVSVTYL 176          
BLAST of FC920729 vs. ExPASy Swiss-Prot
Match: EDL16_ARATH (Sugar transporter ERD6-like 16 OS=Arabidopsis thaliana GN=At5g18840 PE=2 SV=2)

HSP 1 Score: 194.512 bits (493), Expect = 3.157e-49
Identity = 92/145 (63.45%), Postives = 117/145 (80.69%), Query Frame = 2
Query:  146 VVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIADITPKNLRGGFTTVHQLMICIGVSMTYL 580
            V+ STFVAVCGS+ FGS +GYS+P QS I  DL LS+AE+S+FGSILTIGAM+GA+MSGKI+D+ GR+G M  S   CI GW+ + F+K A  LD+GR   GYG+G+ SYVVPVYIA+I+PKNLRGG TT++QLMI IG S+++L
Sbjct:   44 VLFSTFVAVCGSFEFGSCVGYSAPTQSSIRQDLNLSLAEFSMFGSILTIGAMLGAVMSGKISDFSGRKGAMRTSACFCITGWLAVFFTKGALLLDVGRFFTGYGIGVFSYVVPVYIAEISPKNLRGGLTTLNQLMIVIGSSVSFL 188          
BLAST of FC920729 vs. ExPASy Swiss-Prot
Match: ERDL3_ARATH (Sugar transporter ERD6-like 3 OS=Arabidopsis thaliana GN=SUGTL2 PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 9.185e-49
Identity = 90/145 (62.07%), Postives = 115/145 (79.31%), Query Frame = 2
Query:  146 VVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIADITPKNLRGGFTTVHQLMICIGVSMTYL 580
            V+ STFV+VCGS+ FG A GYSS AQ+GI NDLGLSVA+YS+FGSI+T G MIGAI SGK+AD +GR+GTM F+ I CI GWV +  +K + WLD+GRL  G+ +GLLSYV+PVYIA+ITPK++RG F   +QLM   G+S+ Y+
Sbjct:   32 VLFSTFVSVCGSFCFGCAAGYSSVAQTGIINDLGLSVAQYSMFGSIMTFGGMIGAIFSGKVADLMGRKGTMWFAQIFCIFGWVAVALAKDSMWLDIGRLSTGFAVGLLSYVIPVYIAEITPKHVRGAFVFANQLMQSCGLSLFYV 176          
BLAST of FC920729 vs. ExPASy Swiss-Prot
Match: ERDL7_ARATH (Sugar transporter ERD6-like 7 OS=Arabidopsis thaliana GN=At2g48020 PE=2 SV=2)

HSP 1 Score: 192.586 bits (488), Expect = 1.200e-48
Identity = 89/145 (61.38%), Postives = 113/145 (77.93%), Query Frame = 2
Query:  146 VVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIADITPKNLRGGFTTVHQLMICIGVSMTYL 580
            V LSTFVAVCGS+ FGS  GYSSPAQ+ I NDL L++AE+SLFGS+LT GAMIGAI SG IAD +GR+G M  S   C++GW+ I+F+K    LDLGRL  GYGMG  SYVVP++IA+I PK  RG  TT++Q++IC GVS++++
Sbjct:   28 VYLSTFVAVCGSFAFGSCAGYSSPAQAAIRNDLSLTIAEFSLFGSLLTFGAMIGAITSGPIADLVGRKGAMRVSSAFCVVGWLAIIFAKGVVALDLGRLATGYGMGAFSYVVPIFIAEIAPKTFRGALTTLNQILICTGVSVSFI 172          
BLAST of FC920729 vs. ExPASy Swiss-Prot
Match: ERD6_ARATH (Sugar transporter ERD6 OS=Arabidopsis thaliana GN=ERD6 PE=1 SV=3)

HSP 1 Score: 175.252 bits (443), Expect = 1.982e-43
Identity = 82/145 (56.55%), Postives = 110/145 (75.86%), Query Frame = 2
Query:  146 VVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIADITPKNLRGGFTTVHQLMICIGVSMTYL 580
            V LSTFVAV GS+  G  +G+SS AQ+GIT DL LSVAEYS+FGSILT+G +IGA+ SGK+AD +GR+ TM F +  CI GW+ +  ++ A WLD GRLL+G G+G+ SYV+PVYIA+I PK++RG F   +QLM   G+S+ ++
Sbjct:   58 VFLSTFVAVSGSFCTGCGVGFSSGAQAGITKDLSLSVAEYSMFGSILTLGGLIGAVFSGKVADVLGRKRTMLFCEFFCITGWLCVALAQNAMWLDCGRLLLGIGVGIFSYVIPVYIAEIAPKHVRGSFVFANQLMQNCGISLFFI 202          
BLAST of FC920729 vs. ExPASy Swiss-Prot
Match: EDL13_ARATH (Putative sugar transporter ERD6-like 13 OS=Arabidopsis thaliana GN=At3g20460 PE=3 SV=2)

HSP 1 Score: 172.17 bits (435), Expect = 1.678e-42
Identity = 75/145 (51.72%), Postives = 111/145 (76.55%), Query Frame = 2
Query:  146 VVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIADITPKNLRGGFTTVHQLMICIGVSMTYL 580
            ++ +TF A+CG++ +G+A G++SPAQ+GI   L LS+AE+S FG++LTIG ++GA MSGK+AD  GRRG +G S+  C+ GW++I FS+A W LD+GRL +G   G+ SYVVPVYI +I PK +RG F+ ++ L++C  V++TYL
Sbjct:   53 LLFTTFTALCGTFSYGTAAGFTSPAQTGIMAGLNLSLAEFSFFGAVLTIGGLVGAAMSGKLADVFGRRGALGVSNSFCMAGWLMIAFSQATWSLDIGRLFLGVAAGVASYVVPVYIVEIAPKKVRGTFSAINSLVMCASVAVTYL 197          
BLAST of FC920729 vs. ExPASy Swiss-Prot
Match: EDL18_ARATH (Sugar transporter ERD6-like 18 OS=Arabidopsis thaliana GN=SFP2 PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.420e-41
Identity = 80/144 (55.56%), Postives = 110/144 (76.39%), Query Frame = 2
Query:  146 VVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIADITPKNLRGGFTTVHQLMICIGVSMTY 577
            V+LSTF+AVCGS+ FG ++GY+S A+ GI  DL LS+A++S F S+ T+GA IGA+ SGK+A  +GRR TM  SD++CIIGW  I F+K   WL+ GR+  G G+GL+SYVVPVYIA+I+PK++RG FT  +QL+   G++M Y
Sbjct:   35 VILSTFIAVCGSFSFGVSLGYTSGAEIGIMKDLDLSIAQFSAFASLSTLGAAIGALFSGKMAIILGRRKTMWVSDLLCIIGWFSIAFAKDVMWLNFGRISSGIGLGLISYVVPVYIAEISPKHVRGTFTFTNQLLQNSGLAMVY 178          
BLAST of FC920729 vs. ExPASy Swiss-Prot
Match: ERDL8_ARATH (Sugar transporter ERD6-like 8 OS=Arabidopsis thaliana GN=At3g05150 PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 3.164e-41
Identity = 79/145 (54.48%), Postives = 108/145 (74.48%), Query Frame = 2
Query:  146 VVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIADITPKNLRGGFTTVHQLMICIGVSMTYL 580
            V LST +AVCGSY FG+ +GYS+P Q GI  +L LS +++S+FGSIL +GA++GAI SGKI+D+IGR+G M  S ++  IGW+II  +K    LD GR L GYG G LS+VVPV+IA+I+P+ LRG   T++QL I IG++  +L
Sbjct:   35 VYLSTIIAVCGSYEFGTCVGYSAPTQFGIMEELNLSYSQFSVFGSILNMGAVLGAITSGKISDFIGRKGAMRLSSVISAIGWLIIYLAKGDVPLDFGRFLTGYGCGTLSFVVPVFIAEISPRKLRGALATLNQLFIVIGLASMFL 179          
BLAST of FC920729 vs. ExPASy Swiss-Prot
Match: ERDL2_ARATH (Sugar transporter ERD6-like 2 OS=Arabidopsis thaliana GN=SUGTL3 PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 5.397e-41
Identity = 78/144 (54.17%), Postives = 108/144 (75.00%), Query Frame = 2
Query:  146 VVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIADITPKNLRGGFTTVHQLMICIGVSMTY 577
            ++LST V V GS+ +G A+ YSSPAQS I  +LGLSVA+YS F S++T+G MI A+ SGKI+  +GRR TM  SD+ CI GW+ + F+     L+ GRL +G+G+GL+SYVVPVYIA+ITPK  RGGF+  +QL+ C+G+S+ +
Sbjct:   25 LLLSTSVVVAGSFCYGCAMSYSSPAQSKIMEELGLSVADYSFFTSVMTLGGMITAVFSGKISALVGRRQTMWISDVCCIFGWLAVAFAHDIIMLNTGRLFLGFGVGLISYVVPVYIAEITPKTFRGGFSYSNQLLQCLGISLMF 168          
BLAST of FC920729 vs. ExPASy Swiss-Prot
Match: EDL17_ARATH (Sugar transporter ERD6-like 17 OS=Arabidopsis thaliana GN=SFP1 PE=2 SV=2)

HSP 1 Score: 165.622 bits (418), Expect = 1.570e-40
Identity = 81/144 (56.25%), Postives = 106/144 (73.61%), Query Frame = 2
Query:  146 VVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIADITPKNLRGGFTTVHQLMICIGVSMTY 577
            V+LSTFVAVCGS+ FG A GY+S A++G+  DL LS+A++S FGS  T+GA IGA+  G +A  IGRRGTM  SD +CI GW+ I F+K    L+ GR++ G G GL SYVVPVYIA+ITPK++RG FT  +QL+   G++M Y
Sbjct:   31 VILSTFVAVCGSFSFGVATGYTSGAETGVMKDLDLSIAQFSAFGSFATLGAAIGALFCGNLAMVIGRRGTMWVSDFLCITGWLSIAFAKEVVLLNFGRIISGIGFGLTSYVVPVYIAEITPKHVRGTFTFSNQLLQNAGLAMIY 174          
The following BLAST results are available for this feature:
BLAST of FC920729 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
ERDL5_ARATH1.973e-5975.86Sugar transporter ERD6-like 5 OS=Arabidopsis thali... [more]
EDL16_ARATH3.157e-4963.45Sugar transporter ERD6-like 16 OS=Arabidopsis thal... [more]
ERDL3_ARATH9.185e-4962.07Sugar transporter ERD6-like 3 OS=Arabidopsis thali... [more]
ERDL7_ARATH1.200e-4861.38Sugar transporter ERD6-like 7 OS=Arabidopsis thali... [more]
ERD6_ARATH1.982e-4356.55Sugar transporter ERD6 OS=Arabidopsis thaliana GN=... [more]
EDL13_ARATH1.678e-4251.72Putative sugar transporter ERD6-like 13 OS=Arabido... [more]
EDL18_ARATH1.420e-4155.56Sugar transporter ERD6-like 18 OS=Arabidopsis thal... [more]
ERDL8_ARATH3.164e-4154.48Sugar transporter ERD6-like 8 OS=Arabidopsis thali... [more]
ERDL2_ARATH5.397e-4154.17Sugar transporter ERD6-like 2 OS=Arabidopsis thali... [more]
EDL17_ARATH1.570e-4056.25Sugar transporter ERD6-like 17 OS=Arabidopsis thal... [more]

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Properties
Property NameValue
Genbank descriptionC32012C09EF RVDevelop1 Citrus clementina cDNA clone C32012C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920729 ID=FC920729; Name=FC920729; organism=Citrus clementina; type=EST; length=582bp
TGTGAAATTTTTGTGATCTCTGGCAAAGAAAGTGTTACCGGAAGAAGGGT
TATCGAGCTCTTTGCTTAAGGAGAAGTCTCAGGTACATGGTGCTGGCAGT
AGTGGCGGTGAGAGTGGAAGTGGAAGTGCTTCTGCCACAAGTGCTGTTGT
GCTCAGCACTTTCGTTGCTGTCTGTGGTTCCTATGTTTTTGGTTCTGCTA
TTGGGTATTCATCACCTGCTCAGTCTGGAATAACCAATGATCTTGGTCTT
TCTGTCGCGGAGTATTCACTTTTCGGTTCAATATTGACGATCGGAGCTAT
GATAGGTGCAATAATGAGTGGGAAAATAGCGGATTACATTGGCCGAAGAG
GTACAATGGGCTTCTCAGACATAGTTTGCATCATTGGATGGGTTATAATT
GTATTCTCGAAGGCTGCTTGGTGGCTAGATCTTGGAAGGCTGTTGGTGGG
ATATGGGATGGGTCTCCTTTCTTACGTGGTACCTGTGTATATAGCTGATA
TCACACCCAAAAATCTTCGAGGAGGATTTACAACAGTCCATCAGTTGATG
ATATGTATTGGCGTGTCAATGACATATCTCAT
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