FC920730

Overview
NameFC920730
Unique NameFC920730
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length773
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC920730 vs. ExPASy Swiss-Prot
Match: Y5848_ARATH (Uncharacterized protein At5g48480 OS=Arabidopsis thaliana GN=At5g48480 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.579e-16
Identity = 58/146 (39.73%), Postives = 77/146 (52.74%), Query Frame = 1 
Query:  148 NGAAPEKAPATVASFTGMKPQLLVEAPKATDAVQFYKTAFGAVEIGRSVETKRKAEQELPLISCAQLEIAGSTFLVSDVSG--DSAAAQTVGTGCVLCLETEDXXXXXXXXXXXXXXXXXXXXXXXXXCCGERVGKVKDPYGFTWL 579
            NGA P +   T   FT  K  LLVEA K  DAV FYK+AFGA+E G S+  KRK +QELP +  ++L +AGS+F+V DVS     + A++ G+G    L T+D                           G + GKV DP+G TW+
Sbjct:   12 NGAGPVE---THLVFTEFKQMLLVEAQKVGDAVTFYKSAFGAIESGHSLYPKRKLDQELPHVLSSELNLAGSSFVVCDVSSLPGFSTAKSEGSGVTFLLGTKDAEAAVAKAVDAGAVKVEVTEAEVE--LGFK-GKVTDPFGVTWI 151
The following BLAST results are available for this feature:
BLAST of FC920730 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y5848_ARATH1.579e-1639.73Uncharacterized protein At5g48480 OS=Arabidopsis t... [more]
back to top
Properties
Property NameValue
Genbank descriptionC32012C11EF RVDevelop1 Citrus clementina cDNA clone C32012C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920730 ID=FC920730; Name=FC920730; organism=Citrus clementina; type=EST; length=773bp
GAGGAGTCATTTCGTTTTATCTTTCCTTCTCTCTCTTTCGTTTTCTCTCT
CTTTCTCTCTCTTTCTCTCTCCTAGGGTCAGGTTCCTTTCCTTTGTCTCT
AGACTCCAAAACTCTCTCGCTCAATGGCTGATGTCCAGGAGGTTCAGAAT
GGAGCTGCGCCGGAGAAGGCTCCTGCTACCGTGGCCAGCTTCACGGGGAT
GAAGCCGCAGTTGCTTGTGGAAGCACCGAAGGCTACTGACGCTGTTCAGT
TCTACAAGACCGCGTTTGGTGCCGTGGAGATCGGCCGTAGCGTGGAAACC
AAACGCAAGGCTGAACAGGAGCTCCCACTCATCTCCTGCGCTCAACTCGA
GATTGCCGGCTCCACTTTCCTTGTCTCTGACGTTTCCGGTGACTCTGCTG
CTGCACAGACCGTGGGGACCGGATGCGTGCTTTGCTTGGAGACCGAGGAC
GTGGAGGCTGCCGTCGCCAAGGCTGTGAGTGCTGGAGCTGTTGCTGAGGG
TGAGCTCGCTGAAGGCAACGGCGCGTGTTGTGGAGAGCGCGTGGGAAAGG
TCAAAGATCCTTATGGCTTCACTTGGCTCATTTGCTCCCCGGTCAAGAAG
TGCGCTGGCGTGGAAGCTTAAGAGCCGCCGGATCTGATCTTTAGATATTG
ATCTACTATCACATAACTCTCTTTTGTCGTTCGTCTTTACTGCTGTGGGT
TATAGCTCTAGGCTCTTTAGTATTTCGAATCTGATGATATGCTGACGTGA
TCTGATGATGATGTTTTGATTAT
back to top