FC920739

Overview
NameFC920739
Unique NameFC920739
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12850 contig Ccv1_Contig12850:485..1208. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: PRS4A_ARATH (26S proteasome regulatory subunit 4 homolog A OS=Arabidopsis thaliana GN=RPT2A PE=2 SV=1)

HSP 1 Score: 429.483 bits (1103), Expect = 8.917e-120
Identity = 217/226 (96.02%), Postives = 223/226 (98.67%), Query Frame = 2
Query:    2 YYVGILSFVDKDQLEPGCAILMHNKLLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGRIDRKIDFLFP 679
            YYVGILSFVDKDQLEPGC+ILMHNK+LSVVG+LQDEVDPMVSVMKVEKAPLESYADIGGL+AQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDV+VIL TNRIESLDPALLRPGRIDRKI+F  P
Sbjct:  134 YYVGILSFVDKDQLEPGCSILMHNKVLSVVGILQDEVDPMVSVMKVEKAPLESYADIGGLEAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLP 359          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: PRS4_ORYSJ (26S protease regulatory subunit 4 homolog OS=Oryza sativa subsp. japonica GN=TBP2 PE=2 SV=2)

HSP 1 Score: 428.328 bits (1100), Expect = 1.987e-119
Identity = 216/226 (95.58%), Postives = 223/226 (98.67%), Query Frame = 2
Query:    2 YYVGILSFVDKDQLEPGCAILMHNKLLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGRIDRKIDFLFP 679
            YYVGILSFVDKDQLEPGC+ILMHNK+LSVVG+LQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGI+PPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVAD+LSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDV+VIL TNRIESLDPALLRPGRIDRKI+F  P
Sbjct:  139 YYVGILSFVDKDQLEPGCSILMHNKVLSVVGILQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIRPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADELSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLP 364          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: PRS4B_ARATH (26S proteasome regulatory subunit 4 homolog B OS=Arabidopsis thaliana GN=RPT2B PE=2 SV=1)

HSP 1 Score: 426.787 bits (1096), Expect = 5.780e-119
Identity = 216/226 (95.58%), Postives = 223/226 (98.67%), Query Frame = 2
Query:    2 YYVGILSFVDKDQLEPGCAILMHNKLLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGRIDRKIDFLFP 679
            YYVGILSFVDKDQLEPGC+ILMHNK+LSVVG+LQDEVDPMVSVMKVEKAPLESYADIGGL+AQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDA+SGGEREIQRTMLELLNQLDGFDSRGDV+VIL TNRIESLDPALLRPGRIDRKI+F  P
Sbjct:  134 YYVGILSFVDKDQLEPGCSILMHNKVLSVVGILQDEVDPMVSVMKVEKAPLESYADIGGLEAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDANSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLP 359          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: PRS4_DROME (26S protease regulatory subunit 4 OS=Drosophila melanogaster GN=Pros26.4 PE=1 SV=2)

HSP 1 Score: 381.333 bits (978), Expect = 2.785e-105
Identity = 187/226 (82.74%), Postives = 213/226 (94.25%), Query Frame = 2
Query:    2 YYVGILSFVDKDQLEPGCAILMHNKLLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGRIDRKIDFLFP 679
            +YV ILSFVDKDQLEPGC++L+++K+ +VVG+L D+ DPMV+VMK+EKAP E+YADIGGLD QIQEIKE+VELPLTHPE YE++GIKPPKGVILYG PGTGKTLLAKAVAN TSATFLRVVGSELIQKYLGDGPKLVRELFRVA++ +PSIVFIDEIDAVGTKRYD++SGGEREIQRTMLELLNQLDGFDSRGDV+VI+ TNRIE+LDPAL+RPGRIDRKI+F  P
Sbjct:  130 HYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLSDDTDPMVTVMKLEKAPQETYADIGGLDTQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLP 355          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: PRS4_RAT (26S protease regulatory subunit 4 OS=Rattus norvegicus GN=Psmc1 PE=2 SV=1)

HSP 1 Score: 377.096 bits (967), Expect = 5.252e-104
Identity = 184/226 (81.42%), Postives = 212/226 (93.81%), Query Frame = 2
Query:    2 YYVGILSFVDKDQLEPGCAILMHNKLLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGRIDRKIDFLFP 679
            +YV ILSFVDKD LEPGC++L+++K+ +V+G+L D+ DP+V+VMKVEKAP E+YADIGGLD QIQEIKE+VELPLTHPE YE++GIKPPKGVILYG PGTGKTLLAKAVAN TSATFLRVVGSELIQKYLGDGPKLVRELFRVA++ +PSIVFIDEIDA+GTKRYD++SGGEREIQRTMLELLNQLDGFDSRGDV+VI+ TNRIE+LDPAL+RPGRIDRKI+F  P
Sbjct:  131 HYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLP 356          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: PRS4_MOUSE (26S protease regulatory subunit 4 OS=Mus musculus GN=Psmc1 PE=1 SV=1)

HSP 1 Score: 377.096 bits (967), Expect = 5.252e-104
Identity = 184/226 (81.42%), Postives = 212/226 (93.81%), Query Frame = 2
Query:    2 YYVGILSFVDKDQLEPGCAILMHNKLLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGRIDRKIDFLFP 679
            +YV ILSFVDKD LEPGC++L+++K+ +V+G+L D+ DP+V+VMKVEKAP E+YADIGGLD QIQEIKE+VELPLTHPE YE++GIKPPKGVILYG PGTGKTLLAKAVAN TSATFLRVVGSELIQKYLGDGPKLVRELFRVA++ +PSIVFIDEIDA+GTKRYD++SGGEREIQRTMLELLNQLDGFDSRGDV+VI+ TNRIE+LDPAL+RPGRIDRKI+F  P
Sbjct:  131 HYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLP 356          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: PRS4_HUMAN (26S protease regulatory subunit 4 OS=Homo sapiens GN=PSMC1 PE=1 SV=1)

HSP 1 Score: 377.096 bits (967), Expect = 5.252e-104
Identity = 184/226 (81.42%), Postives = 212/226 (93.81%), Query Frame = 2
Query:    2 YYVGILSFVDKDQLEPGCAILMHNKLLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGRIDRKIDFLFP 679
            +YV ILSFVDKD LEPGC++L+++K+ +V+G+L D+ DP+V+VMKVEKAP E+YADIGGLD QIQEIKE+VELPLTHPE YE++GIKPPKGVILYG PGTGKTLLAKAVAN TSATFLRVVGSELIQKYLGDGPKLVRELFRVA++ +PSIVFIDEIDA+GTKRYD++SGGEREIQRTMLELLNQLDGFDSRGDV+VI+ TNRIE+LDPAL+RPGRIDRKI+F  P
Sbjct:  131 HYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLP 356          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: PRS4_CHICK (26S protease regulatory subunit 4 OS=Gallus gallus GN=PSMC1 PE=2 SV=1)

HSP 1 Score: 375.555 bits (963), Expect = 1.528e-103
Identity = 183/226 (80.97%), Postives = 211/226 (93.36%), Query Frame = 2
Query:    2 YYVGILSFVDKDQLEPGCAILMHNKLLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGRIDRKIDFLFP 679
            +YV ILSFVDKD LEPGC++L+++K+ +V+G+L D+ DP+V+VMK+EKAP E+YADIGGLD QIQEIKE+VELPLTHPE YE++GIKPPKGVILYG PGTGKTLLAKAVAN TSATFLRVVGSELIQKYLGDGPKLVRELFRVA++  PSIVFIDEIDA+GTKRYD++SGGEREIQRTMLELLNQLDGFDSRGDV+VI+ TNRIE+LDPAL+RPGRIDRKI+F  P
Sbjct:  131 HYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKLEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHGPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLP 356          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: PRS4_CAEEL (Probable 26S protease regulatory subunit 4 OS=Caenorhabditis elegans GN=rpt-2 PE=2 SV=1)

HSP 1 Score: 375.555 bits (963), Expect = 1.528e-103
Identity = 182/226 (80.53%), Postives = 212/226 (93.81%), Query Frame = 2
Query:    2 YYVGILSFVDKDQLEPGCAILMHNKLLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGRIDRKIDFLFP 679
            +YV I+SFVDK+QLEPGC++L+++K  +V+G+L D+ DPMVSVMK+EKAP E+YAD+GGLD QIQEIKEAVELPLTHPE YE++GI+PPKGVILYG PGTGKTLLAKAVAN TSATFLR+VGSELIQKYLGDGPK+VRELFRVA++ +PSIVFIDEIDAVGTKRYD++SGGEREIQRTMLELLNQLDGFDSRGDV+V++ TNRIESLDPAL+RPGRIDRKI+F  P
Sbjct:  134 HYVNIMSFVDKEQLEPGCSVLLNHKNHAVIGVLSDDTDPMVSVMKLEKAPQETYADVGGLDQQIQEIKEAVELPLTHPEYYEEMGIRPPKGVILYGCPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPKMVRELFRVAEENAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVLMATNRIESLDPALIRPGRIDRKIEFPLP 359          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: PRS4_DICDI (26S protease regulatory subunit 4 homolog OS=Dictyostelium discoideum GN=psmC1 PE=1 SV=1)

HSP 1 Score: 373.629 bits (958), Expect = 5.807e-103
Identity = 185/226 (81.86%), Postives = 209/226 (92.48%), Query Frame = 2
Query:    2 YYVGILSFVDKDQLEPGCAILMHNKLLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGRIDRKIDFLFP 679
            +YV I+SFVDK +L  G  +L++NK LSVVG++  EVDPMV+VMKVEKAP ESY+DIGGL+AQ+QE+KEA+ELPLTHPELYE+IGIKPPKGVILYGEPGTGKTLLAKAVAN TSATFLRVVGSELIQKYLGDGPKLVRELFRVAD+ +PSIVFIDEIDAVGTKRYD+ SGGEREIQRTMLELLNQLDGFD+R DV+VI+ TNRIE+LDPAL+RPGRIDRKI+F  P
Sbjct:  130 HYVRIMSFVDKSKLYLGATVLLNNKTLSVVGVIDGEVDPMVNVMKVEKAPTESYSDIGGLEAQVQEMKEAIELPLTHPELYEEIGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVADECAPSIVFIDEIDAVGTKRYDSQSGGEREIQRTMLELLNQLDGFDARTDVKVIMATNRIETLDPALIRPGRIDRKIEFPLP 355          
The following BLAST results are available for this feature:
BLAST of FC920739 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 381
Match NameE-valueIdentityDescription
PRS4A_ARATH8.917e-12096.0226S proteasome regulatory subunit 4 homolog A OS=A... [more]
PRS4_ORYSJ1.987e-11995.5826S protease regulatory subunit 4 homolog OS=Oryza... [more]
PRS4B_ARATH5.780e-11995.5826S proteasome regulatory subunit 4 homolog B OS=A... [more]
PRS4_DROME2.785e-10582.7426S protease regulatory subunit 4 OS=Drosophila me... [more]
PRS4_RAT5.252e-10481.4226S protease regulatory subunit 4 OS=Rattus norveg... [more]
PRS4_MOUSE5.252e-10481.4226S protease regulatory subunit 4 OS=Mus musculus ... [more]
PRS4_HUMAN5.252e-10481.4226S protease regulatory subunit 4 OS=Homo sapiens ... [more]
PRS4_CHICK1.528e-10380.9726S protease regulatory subunit 4 OS=Gallus gallus... [more]
PRS4_CAEEL1.528e-10380.53Probable 26S protease regulatory subunit 4 OS=Caen... [more]
PRS4_DICDI5.807e-10381.8626S protease regulatory subunit 4 homolog OS=Dicty... [more]

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Properties
Property NameValue
Genbank descriptionC32012D12EF RVDevelop1 Citrus clementina cDNA clone C32012D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920739 ID=FC920739; Name=FC920739; organism=Citrus clementina; type=EST; length=724bp
GTATTACGTCGGGATCTTGTCCTTTGTTGATAAGGATCAGCTGGAGCCTG
GCTGTGCTATTTTGATGCACAATAAGCTTCTTTCGGTCGTTGGGCTTCTG
CAAGATGAAGTAGATCCAATGGTGTCTGTGATGAAGGTTGAGAAGGCTCC
ATTGGAGTCTTATGCTGATATTGGAGGTTTAGATGCACAGATACAGGAGA
TTAAAGAAGCTGTTGAGCTTCCTCTTACCCATCCTGAACTTTATGAAGAT
ATCGGTATCAAGCCTCCTAAGGGAGTTATATTGTATGGAGAGCCTGGAAC
AGGCAAGACACTGCTTGCAAAGGCTGTGGCAAATTCAACATCTGCAACTT
TCTTGCGTGTTGTCGGTAGTGAATTAATTCAGAAGTACTTGGGTGATGGA
CCAAAATTAGTAAGGGAACTTTTCAGAGTTGCTGATGATCTGTCACCTTC
TATCGTCTTCATTGATGAAATTGATGCAGTTGGTACGAAGAGGTATGATG
CCCACTCAGGTGGCGAACGTGAAATTCAGAGAACCATGTTGGAGTTGCTG
AACCAGTTGGATGGGTTTGATTCTAGAGGAGATGTNCAAGTAATTCTTGG
CACCAACCGAATTGAAAGCCTGGATCCAGCTTTACTTCGGCCAGGTCGAA
TAGATAGAAAGATTGATTTCCTCTTCCCGATATCAGACTAGGAGACGTAT
TTCCAGATTCCACATCAGGATGAC
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