FC920740

Overview
NameFC920740
Unique NameFC920740
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length664
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10348 contig Ccv1_Contig10348:14..677. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920740 vs. ExPASy Swiss-Prot
Match: PSMD4_ARATH (26S proteasome non-ATPase regulatory subunit 4 OS=Arabidopsis thaliana GN=MBP1 PE=1 SV=1)

HSP 1 Score: 296.975 bits (759), Expect = 5.844e-80
Identity = 143/177 (80.79%), Postives = 161/177 (90.96%), Query Frame = 3
Query:  114 MVLEATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGE-DDEGNTEKLEALLAAVNNNDSSHLVHVPPG 641
            MVLEAT+ICIDNSEWMRNGDY+PSR QAQTEA NL+CGAKTQ NPENTVG++TMAGKGVRVL TPTSDLGKILACMHGL++GGE+NL A IQ+AQLALKHRQNK Q+QRIIVF GSPIK+EKK LE++G++LKKNSV+LDIVNFGE DDE   +KLEALL AVNNND SH+VHVP G
Sbjct:    1 MVLEATMICIDNSEWMRNGDYSPSRLQAQTEAVNLLCGAKTQSNPENTVGILTMAGKGVRVLTTPTSDLGKILACMHGLDVGGEINLTAAIQIAQLALKHRQNKNQRQRIIVFAGSPIKYEKKALEIVGKRLKKNSVSLDIVNFGEDDDEEKPQKLEALLTAVNNNDGSHIVHVPSG 177          
BLAST of FC920740 vs. ExPASy Swiss-Prot
Match: PSMD4_DICDI (26S proteasome non-ATPase regulatory subunit 4 OS=Dictyostelium discoideum GN=psmD4 PE=2 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 3.229e-54
Identity = 103/177 (58.19%), Postives = 134/177 (75.71%), Query Frame = 3
Query:  114 MVLEATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGP 644
            M LEAT++C+DNSEWMRNGD+ PSR +AQ +A NLIC +KTQ NPE+ V +M+MAGK   VLVT T +L KIL+    L+I G+++ +  +Q+AQLAL+HRQN  Q  RII FVGSP+K  K+ L  + ++LKKN VA+DI+NFGE  E N++KLEA +  VNNND SHL+ VPPGP
Sbjct:    1 MTLEATIVCLDNSEWMRNGDFTPSRSEAQKDAVNLICASKTQSNPESAVSIMSMAGKKPEVLVTLTQELSKILSGAQELKINGKIDFSTTMQIAQLALRHRQNNHQHPRIIAFVGSPLKETKEELIQLAKRLKKNGVAVDIINFGEVTE-NSDKLEAFINDVNNNDESHLLTVPPGP 176          
BLAST of FC920740 vs. ExPASy Swiss-Prot
Match: PSMD4_MOUSE (26S proteasome non-ATPase regulatory subunit 4 OS=Mus musculus GN=Psmd4 PE=1 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.478e-46
Identity = 93/179 (51.96%), Postives = 128/179 (71.51%), Query Frame = 3
Query:  114 MVLEATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNND--SSHLVHVPPGP 644
            MVLE+T++C+DNSE+MRNGD+ P+R QAQ +A N++C +KT+ NPEN VG++T+A     VL T T D G+IL+ +H ++  G++    GI+VA LALKHRQ K  + RII FVGSP++  +K L  + ++LKK  V +DI+NFGE +E NTEKL A +  +N  D   SHLV VPPGP
Sbjct:    1 MVLESTMVCVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLAND-CEVLTTLTPDTGRILSKLHTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVEDNEKDLVKLAKRLKKEKVNVDIINFGE-EEVNTEKLTAFVNTLNGKDGTGSHLVTVPPGP 177          
BLAST of FC920740 vs. ExPASy Swiss-Prot
Match: PSMD4_HUMAN (26S proteasome non-ATPase regulatory subunit 4 OS=Homo sapiens GN=PSMD4 PE=1 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.478e-46
Identity = 93/179 (51.96%), Postives = 128/179 (71.51%), Query Frame = 3
Query:  114 MVLEATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNND--SSHLVHVPPGP 644
            MVLE+T++C+DNSE+MRNGD+ P+R QAQ +A N++C +KT+ NPEN VG++T+A     VL T T D G+IL+ +H ++  G++    GI+VA LALKHRQ K  + RII FVGSP++  +K L  + ++LKK  V +DI+NFGE +E NTEKL A +  +N  D   SHLV VPPGP
Sbjct:    1 MVLESTMVCVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLAND-CEVLTTLTPDTGRILSKLHTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVEDNEKDLVKLAKRLKKEKVNVDIINFGE-EEVNTEKLTAFVNTLNGKDGTGSHLVTVPPGP 177          
BLAST of FC920740 vs. ExPASy Swiss-Prot
Match: PSMD4_BOVIN (26S proteasome non-ATPase regulatory subunit 4 OS=Bos taurus GN=PSMD4 PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.478e-46
Identity = 93/179 (51.96%), Postives = 128/179 (71.51%), Query Frame = 3
Query:  114 MVLEATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNND--SSHLVHVPPGP 644
            MVLE+T++C+DNSE+MRNGD+ P+R QAQ +A N++C +KT+ NPEN VG++T+A     VL T T D G+IL+ +H ++  G++    GI+VA LALKHRQ K  + RII FVGSP++  +K L  + ++LKK  V +DI+NFGE +E NTEKL A +  +N  D   SHLV VPPGP
Sbjct:    1 MVLESTMVCVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLAND-CEVLTTLTPDTGRILSKLHTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVEDNEKDLVKLAKRLKKEKVNVDIINFGE-EEVNTEKLTAFVNTLNGKDGTGSHLVTVPPGP 177          
BLAST of FC920740 vs. ExPASy Swiss-Prot
Match: RPN10_YEAST (26S proteasome regulatory subunit RPN10 OS=Saccharomyces cerevisiae GN=RPN10 PE=1 SV=3)

HSP 1 Score: 180.644 bits (457), Expect = 6.104e-45
Identity = 95/179 (53.07%), Postives = 129/179 (72.07%), Query Frame = 3
Query:  114 MVLEATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNN--NDSSHLVHVPPGP 644
            MVLEAT++ IDNSE+ RNGD+  +RF+AQ ++   I  AK   NPENTVG+++ AG   RVL T T++ GKILA +H  +I G+L++A  +Q+AQL LKHRQNK Q QRI+ FV SPI   +  L  + + LKKN+VA+DI+NFGE ++ NTE L+  +AAVNN   ++SHL+ V PGP
Sbjct:    1 MVLEATVLVIDNSEYSRNGDFPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGAGANPRVLSTFTAEFGKILAGLHDTQIEGKLHMATALQIAQLTLKHRQNKVQHQRIVAFVCSPISDSRDELIRLAKTLKKNNVAVDIINFGEIEQ-NTELLDEFIAAVNNPQEETSHLLTVTPGP 178          
BLAST of FC920740 vs. ExPASy Swiss-Prot
Match: RPN10_SCHPO (26S proteasome regulatory subunit rpn10 OS=Schizosaccharomyces pombe GN=rpn10 PE=1 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.360e-44
Identity = 90/177 (50.85%), Postives = 120/177 (67.80%), Query Frame = 3
Query:  114 MVLEATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGP 644
            MVLEAT+I IDNSEWM NGDY P+RF+AQ +  ++I   K   NPEN  G+MT+     +VL T T D GK L+ MH L + G      GIQ+AQLALKHR+NK Q+QRI+ FVGSPI  ++K L  + +++KKN+VA+DI++ GE    N   L+  + A N++DS HLV +PP P
Sbjct:    1 MVLEATMILIDNSEWMINGDYIPTRFEAQKDTVHMIFNQKINDNPENMCGLMTIGDNSPQVLSTLTRDYGKFLSAMHDLPVRGNAKFGDGIQIAQLALKHRENKIQRQRIVAFVGSPIVEDEKNLIRLAKRMKKNNVAIDIIHIGELQ--NESALQHFIDAANSSDSCHLVSIPPSP 175          
BLAST of FC920740 vs. ExPASy Swiss-Prot
Match: PSMD4_DROME (26S proteasome non-ATPase regulatory subunit 4 OS=Drosophila melanogaster GN=Pros54 PE=1 SV=2)

HSP 1 Score: 168.318 bits (425), Expect = 3.135e-41
Identity = 91/178 (51.12%), Postives = 118/178 (66.29%), Query Frame = 3
Query:  114 MVLEATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNND--SSHLVHVPPG 641
            MVLE+T+IC DNS++ RNGDY P+R   Q +  NL+C  K + NPEN VG+MT++   V VL T TSD G+I + MH ++  GE+NL  GI++A L LKHRQ K  + RI+VFVGSPI HE+  L    ++LKK  V +DIV+FG D   N E L A + A+N  D   SHLV VP G
Sbjct:    1 MVLESTMICFDNSDFQRNGDYFPTRLIVQRDGINLVCLTKLRSNPENNVGLMTLSNT-VEVLATLTSDAGRIFSKMHLVQPKGEINLLTGIRIAHLVLKHRQGKNHKMRIVVFVGSPINHEEGDLVKQAKRLKKEKVNVDIVSFG-DHGNNNEILTAFINALNGKDGTGSHLVSVPRG 176          
BLAST of FC920740 vs. ExPASy Swiss-Prot
Match: PIPSL_HUMAN (Putative PIP5K1A and PSMD4-like protein OS=Homo sapiens GN=PIPSL PE=5 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.244e-38
Identity = 84/177 (47.46%), Postives = 115/177 (64.97%), Query Frame = 3
Query:  120 LEATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNND--SSHLVHVPPGP 644
            L+     +DNSE+M NGD+ P+R QAQ +A N +C +KT+ NPEN VG++T+      VL T T D G+IL+ +H ++  G++    GI VA LALKHRQ    + RII FVG+P++  +K L  + + LKK  V +DI+NFGE +E NTEKL A +  +N  D   SHLV VPPGP
Sbjct:  488 LQMLTTSVDNSEYMGNGDFLPTRLQAQQDAVNTVCHSKTRSNPENNVGLITL-DNDCEVLTTLTPDTGRILSKLHTVQPKGKITFCMGIHVAHLALKHRQGNNHKIRIIAFVGNPVEDNEKNLVKLAKCLKKEKVNVDIINFGE-EEVNTEKLTAFVNTLNGKDGTGSHLVTVPPGP 662          
BLAST of FC920740 vs. ExPASy Swiss-Prot
Match: PSMD4_SCHMA (26S proteasome non-ATPase regulatory subunit 4 OS=Schistosoma mansoni PE=2 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 5.534e-38
Identity = 81/178 (45.51%), Postives = 119/178 (66.85%), Query Frame = 3
Query:  114 MVLEATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNND--SSHLVHVPPG 641
            M  EAT+I +DNS++MRNGD+ P+R QAQ +A  LIC +K Q NPENT+G++++A     VL T T+D+ KI   +H +E  G +   + I++A LAL+HRQ + Q+ RI+ F+GSPI  ++K L  + ++LKK  V +DI+NFGE +E N +KL   +  +N  D   SHL+ V PG
Sbjct:    1 MSQEATIIAVDNSDYMRNGDFFPTRLQAQNDAVGLICQSKRQRNPENTIGLLSLAN--TEVLCTLTNDVSKIYNRLHLVEPKGRIIFCSSIRIAHLALRHRQLRHQKMRIVCFIGSPILEDEKELTRLAKRLKKEKVNVDIINFGE-NETNEQKLSEFIDTLNGKDGTGSHLISVAPG 175          
The following BLAST results are available for this feature:
BLAST of FC920740 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
PSMD4_ARATH5.844e-8080.7926S proteasome non-ATPase regulatory subunit 4 OS=... [more]
PSMD4_DICDI3.229e-5458.1926S proteasome non-ATPase regulatory subunit 4 OS=... [more]
PSMD4_MOUSE2.478e-4651.9626S proteasome non-ATPase regulatory subunit 4 OS=... [more]
PSMD4_HUMAN2.478e-4651.9626S proteasome non-ATPase regulatory subunit 4 OS=... [more]
PSMD4_BOVIN2.478e-4651.9626S proteasome non-ATPase regulatory subunit 4 OS=... [more]
RPN10_YEAST6.104e-4553.0726S proteasome regulatory subunit RPN10 OS=Sacchar... [more]
RPN10_SCHPO1.360e-4450.8526S proteasome regulatory subunit rpn10 OS=Schizos... [more]
PSMD4_DROME3.135e-4151.1226S proteasome non-ATPase regulatory subunit 4 OS=... [more]
PIPSL_HUMAN3.244e-3847.46Putative PIP5K1A and PSMD4-like protein OS=Homo sa... [more]
PSMD4_SCHMA5.534e-3845.5126S proteasome non-ATPase regulatory subunit 4 OS=... [more]
back to top
Properties
Property NameValue
Genbank descriptionC32012E01EF RVDevelop1 Citrus clementina cDNA clone C32012E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920740 ID=FC920740; Name=FC920740; organism=Citrus clementina; type=EST; length=664bp
GATTTTTTGAGAAACTTAAAATTTCTTACTTGAGTCTTCTTTAACGACGC
TGCTCTCATTCTTTCCCGAGCATTGGCATTTGTTCTGTTTCTGATCTCAA
AGAGTAGATAGCCATGGTTCTCGAGGCAACGTTGATCTGTATTGATAATT
CTGAGTGGATGCGTAACGGCGATTACGCTCCTAGTAGATTCCAAGCTCAA
ACTGAAGCTGCTAATCTCATTTGCGGAGCCAAAACTCAGTTAAATCCTGA
GAATACCGTAGGTGTTATGACAATGGCAGGGAAAGGGGTTCGTGTTTTGG
TCACTCCTACTAGTGATCTTGGCAAGATCTTGGCTTGCATGCACGGTTTA
GAAATAGGCGGTGAGTTGAATCTTGCTGCTGGGATCCAGGTGGCTCAATT
GGCTCTAAAGCATCGCCAGAACAAAAAGCAGCAACAAAGGATTATTGTCT
TCGTTGGAAGTCCCATCAAGCATGAAAAGAAAGTGCTGGAGATGATCGGC
AGGAAGTTGAAAAAGAATAGTGTAGCACTTGACATTGTCAACTTTGGTGA
AGACGATGAGGGGAATACGGAGAAGCTTGAAGCACTTCTTGCTGCTGTGA
ACAACAATGACAGTAGCCACCTTGTTCACGTTCCTCCTGGTCCAATGCCC
TTTCTGATGTGCTT
back to top