FC920742

Overview
NameFC920742
Unique NameFC920742
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length693
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920742 vs. ExPASy Swiss-Prot
Match: SCS2_YEAST (Vesicle-associated membrane protein-associated protein SCS2 OS=Saccharomyces cerevisiae GN=SCS2 PE=1 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 2.335e-13
Identity = 49/160 (30.63%), Postives = 79/160 (49.38%), Query Frame = 1
Query:  127 LDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKP-KAISDFTVTMQAQRVAPPDLQCKDKFLIQGVVVPF---GTFDEDITSDMFAKDSGKYVEEKKLRVILMSPPQSPVLLPRNGELKQDSSPETSLQKDRALSGVEN 594
            ++I P  L +   + +QST    + N SDQ +AFKVKTT+PK YCVRPN +++ P + I    + +        D +C+DKFL+  +  P+   G    D+ SD+ A+   + + +K     L+SP   P       E K+   P     + + +  V N
Sbjct:    4 VEISPDVLVYKSPLTEQSTEYASISNNSDQTIAFKVKTTAPKFYCVRPNAAVVAPGETIQVQVIFLGLTEEPAADFKCRDKFLVITLPSPYDLNGKAVADVWSDLEAEFKQQAISKKIKVKYLISPDVHPAQNQNIQENKETVEPVVQDSEPKEVPAVVN 163          
BLAST of FC920742 vs. ExPASy Swiss-Prot
Match: YH75_SCHPO (Vesicle-associated membrane protein-associated protein C16G5.05c OS=Schizosaccharomyces pombe GN=SPBC16G5.05c PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.514e-12
Identity = 50/152 (32.89%), Postives = 77/152 (50.66%), Query Frame = 1
Query:  145 ELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVTMQAQRVAP-PDLQCKDKFLIQGVVVPFGTFDEDITSDMF-----AKDSGKYVEEKKLRVILMSPPQSPVLLPRNGELKQDSSPETSLQKDRALS 582
            EL F       S  +I + N + + V FKVKTT+PK YCVRPN   I+PK+  +  V +QA +  P PD +C+DKFLIQ + +  G  D     +        +  G+ + ++K+R +  S  Q P    +  E    S+P  S++    L+
Sbjct:    8 ELFFYPPFTTMSKELISVHNPNPEPVIFKVKTTAPKHYCVRPNSGKIEPKSTVNVQVLLQAMKEEPAPDFKCRDKFLIQSMAI--GDADTSNVENYHEFWTEMEKQGRSIFDRKIRCV-YSTKQPPQSADKQVENTSTSNPPVSVEGSENLA 156          
BLAST of FC920742 vs. ExPASy Swiss-Prot
Match: VAPB_HUMAN (Vesicle-associated membrane protein-associated protein B/C OS=Homo sapiens GN=VAPB PE=1 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 4.869e-11
Identity = 43/129 (33.33%), Postives = 72/129 (55.81%), Query Frame = 1
Query:  118 EELLDIQPL-ELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPPDLQCKDKFLIQGVVVPFGTFDEDITSDMFAKDSGKYVEEKKLRVILMSPPQS 501
            E++L ++P  ELKF        T  ++LGN +D+ V FKVKTT+P++YCVRPN  II   A  + +V +Q     P + + K KF++Q +  P  T D +    ++ +   + + + KLR +   P ++
Sbjct:    5 EQVLSLEPQHELKFRGPFTDVVTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGIIDAGASINVSVMLQPFDYDPNE-KSKHKFMVQSMFAPTDTSDMEA---VWKEAKPEDLMDSKLRCVFELPAEN 129          
BLAST of FC920742 vs. ExPASy Swiss-Prot
Match: VAPB_BOVIN (Vesicle-associated membrane protein-associated protein B OS=Bos taurus GN=VAPB PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.869e-11
Identity = 43/129 (33.33%), Postives = 72/129 (55.81%), Query Frame = 1
Query:  118 EELLDIQPL-ELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPPDLQCKDKFLIQGVVVPFGTFDEDITSDMFAKDSGKYVEEKKLRVILMSPPQS 501
            E++L ++P  ELKF        T  ++LGN +D+ V FKVKTT+P++YCVRPN  II   A  + +V +Q     P + + K KF++Q +  P  T D +    ++ +   + + + KLR +   P ++
Sbjct:    5 EQVLSLEPQHELKFRGPFTDVVTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGIIDAGASINVSVMLQPFDYDPNE-KSKHKFMVQSMFAPTDTSDMEA---VWKEAKPEDLMDSKLRCVFELPAEN 129          
BLAST of FC920742 vs. ExPASy Swiss-Prot
Match: VAPB_PIG (Vesicle-associated membrane protein-associated protein B OS=Sus scrofa GN=VAPB PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.359e-11
Identity = 43/129 (33.33%), Postives = 71/129 (55.04%), Query Frame = 1
Query:  118 EELLDIQPL-ELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPPDLQCKDKFLIQGVVVPFGTFDEDITSDMFAKDSGKYVEEKKLRVILMSPPQS 501
            E++L ++P  ELKF        T  ++LGN +D+ V FKVKTT+P++YCVRPN  II   A  + +V +Q     P + + K KF++Q +  P  T D +     + +   + + + KLR +   P ++
Sbjct:    5 EQVLSLEPQHELKFRGPFTDVVTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGIIDAGASINVSVMLQPFDYDPNE-KSKHKFMVQSMFAPADTSDMEAA---WKEAKPEDLMDSKLRCVFELPAEN 129          
The following BLAST results are available for this feature:
BLAST of FC920742 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
SCS2_YEAST2.335e-1330.63Vesicle-associated membrane protein-associated pro... [more]
YH75_SCHPO1.514e-1232.89Vesicle-associated membrane protein-associated pro... [more]
VAPB_HUMAN4.869e-1133.33Vesicle-associated membrane protein-associated pro... [more]
VAPB_BOVIN4.869e-1133.33Vesicle-associated membrane protein-associated pro... [more]
VAPB_PIG6.359e-1133.33Vesicle-associated membrane protein-associated pro... [more]
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Properties
Property NameValue
Genbank descriptionC32012E03EF RVDevelop1 Citrus clementina cDNA clone C32012E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920742 ID=FC920742; Name=FC920742; organism=Citrus clementina; type=EST; length=693bp
CGGGGAGATCACCAAACCTTAACAAATCTCTCCATCTTTGCCATTGCCAA
CAGGCTTGACTCTTCTGTGCCTCGAATTGTTGGACTGCATTTTGACAAAT
TAGATTGAAACATGGCTGAAGAGCTACTAGACATCCAACCATTGGAACTC
AAGTTTACATTTGAGGTGAAGAAACAAAGTACATGTGTAATTCAACTTGG
CAACAAATCTGATCAGTGTGTTGCTTTCAAGGTAAAAACTACATCTCCAA
AGAAATATTGTGTAAGACCCAATGTAAGTATTATCAAGCCAAAAGCAATA
TCTGATTTTACAGTTACTATGCAAGCTCAGCGTGTAGCTCCACCAGATTT
GCAGTGCAAAGATAAGTTTCTGATTCAAGGCGTAGTGGTTCCATTCGGGA
CTTTTGACGAGGACATTACTTCCGATATGTTTGCAAAAGATTCCGGTAAG
TATGTTGAAGAAAAGAAGCTGCGAGTGATTCTAATGAGCCCACCCCAGTC
CCCAGTTTTGCTGCCAAGAAATGGAGAGTTAAAGCAAGATTCATCCCCTG
AGACATCATTGCAAAAAGATAGAGCACTCAGTGGAGTTGAAAACATACAT
CCAGGCGATGGGGTAGCTGCAAATGCGGAGGTGTTCGAAACTGCTAAGNT
CGCAGATGAGTTAACAGAAACTAAGGATCTGCAGTGGCTTGAA
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