FC920743
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC920743 vs. ExPASy Swiss-Prot
Match: PRP6_HUMAN (Pre-mRNA-processing factor 6 OS=Homo sapiens GN=PRPF6 PE=1 SV=1) HSP 1 Score: 210.69 bits (535), Expect = 5.817e-54 Identity = 114/226 (50.44%), Postives = 140/226 (61.95%), Query Frame = 2 Query: 2 GDVPAARAILQEAYAAIPNSEEIWLAAFKLEFENHEPERARMLLAKARDRGGTERVWMKSAIVXXXXXXXXXXXXXXXXGLKQFPSFFKLWLMXXXXXXXXXXXXXAKEAYESGLKHCPNCIPLWLSLSNLEGMMNGLSKARAVLTMARKKNPQNAELWLAAIRAELKHGNKKEADSLMAKALQVCRKSGILWAASIEMVPRPQRRSKSADAYKNCDHDPACIAAV 679 GDVPAAR+IL A+ A PNSEEIWLAA KLE EN E ERAR LLAKAR T RV+MKS + L+ + F KLW+M A+EAY GLK CP+ PLWL LS LE + L++ARA+L +R KNP+N LWL ++R E + G K A++LMAKALQ C SGILW+ +I + RPQRR+KS DA K C+HDP + AV Sbjct: 622 GDVPAARSILALAFQANPNSEEIWLAAVKLESENDEYERARRLLAKARSSAPTARVFMKSVKLEWVQDNIRAAQDLCEEALRHYEDFPKLWMMKGQIEEQKEMMEKAREAYNQGLKKCPHSTPLWLLLSRLEEKIGQLTRARAILEKSRLKNPKNPGLWLESVRLEYRAGLKNIANTLMAKALQECPNSGILWSEAIFLEARPQRRTKSVDALKKCEHDPHVLLAV 847
BLAST of FC920743 vs. ExPASy Swiss-Prot
Match: PRP6_MOUSE (Pre-mRNA-processing factor 6 OS=Mus musculus GN=Prpf6 PE=2 SV=1) HSP 1 Score: 209.92 bits (533), Expect = 9.922e-54 Identity = 112/226 (49.56%), Postives = 141/226 (62.39%), Query Frame = 2 Query: 2 GDVPAARAILQEAYAAIPNSEEIWLAAFKLEFENHEPERARMLLAKARDRGGTERVWMKSAIVXXXXXXXXXXXXXXXXGLKQFPSFFKLWLMXXXXXXXXXXXXXAKEAYESGLKHCPNCIPLWLSLSNLEGMMNGLSKARAVLTMARKKNPQNAELWLAAIRAELKHGNKKEADSLMAKALQVCRKSGILWAASIEMVPRPQRRSKSADAYKNCDHDPACIAAV 679 GDVPAAR+IL A+ A PNSEEIWLAA KLE EN+E ERAR LLAKAR T RV+MKS + L+ + F KLW+M A+EAY GLK CP+ PLWL LS LE + L++ARA+L +R KNP+N LWL ++R E + G K A++LMAKALQ C SGILW+ ++ + RPQR++KS DA K C+HDP + AV Sbjct: 622 GDVPAARSILALAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARSSAPTARVFMKSVKLEWVLGNISAAQELCEEALRHYEDFPKLWMMKGQIEEQGELMEKAREAYNQGLKKCPHSTPLWLLLSRLEEKIGQLTRARAILEKSRLKNPKNPGLWLESVRLEYRAGLKNIANTLMAKALQECPNSGILWSEAVFLEARPQRKTKSVDALKKCEHDPHVLLAV 847
BLAST of FC920743 vs. ExPASy Swiss-Prot
Match: PRP1_SCHPO (Pre-mRNA-splicing factor prp1 OS=Schizosaccharomyces pombe GN=prp1 PE=1 SV=1) HSP 1 Score: 166.777 bits (421), Expect = 9.633e-41 Identity = 90/216 (41.67%), Postives = 125/216 (57.87%), Query Frame = 2 Query: 5 DVPAARAILQEAYAAIPNSEEIWLAAFKLEFENHEPERARMLLAKARDRGGTERVWMKSAIVXXXXXXXXXXXXXXXXGLKQFPSFFKLWLMXXXXXXXXXXXXXAKEAYESGLKHCPNCIPLWLSLSNLEGMMNGLSKARAVLTMARKKNPQNAELWLAAIRAELKHGNKKEADSLMAKALQVCRKSGILWAASIEMVPRPQRRSKSADAYKNCD 652 D+ AR IL A+ NSEEIWLAA ++EF N+E ERAR LLA+AR GTER+W KS + LK +P + KL++M A++AY +G K CP IPLWL L+ LE + + +AR V A+ KNP+N LWL I+ EL+ GN + + +AKALQ C SG+LW +I + PR QR++++ DA + C+ Sbjct: 593 DIAGARNILGRAFEYNSNSEEIWLAAVRIEFVNNENERARKLLARARIESGTERIWTKSISLERILDEKDRALQLLENALKIYPHYDKLYMMKGQIFEDKEQIELARDAYLAGTKVCPYSIPLWLLLAKLEEKQSVI-RARVVFDRAKVKNPKNEFLWLELIKMELRAGNISQVRAALAKALQECPSSGLLWTEAIWLEPRAQRKTRATDALRKCE 807
BLAST of FC920743 vs. ExPASy Swiss-Prot
Match: PRP6_YEAST (Pre-mRNA-splicing factor 6 OS=Saccharomyces cerevisiae GN=PRP6 PE=1 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 6.090e-11 Identity = 38/128 (29.69%), Postives = 65/128 (50.78%), Query Frame = 2 Query: 242 LKQFPSFFKLWLMXXXXXXXXXXXXXAKEAYESGLKHCPNCIPLWLSLSNLEGM-MNGLSKARAVLTMARKKNPQNAELWLAAIRAELKHGNKKEADSLMAKALQVCRKSGILWAASIEMVPRPQRRS 622 LK FP K +L ++E Y SG + PNC LW+SLS ++ + + +AR++L KNP + ++A I+ E++ GN +A+ L+ +ALQ + +LW I++ + S Sbjct: 661 LKSFPICHKFFLQLGQIYHSMGNIEMSRETYLSGTRLVPNCPLLWVSLSKIDEIDLKNPVRARSILDRGLLKNPDDVLFYIAKIQMEIRLGNLDQAELLVTQALQKFPSNALLWVEQIKLFKHGNKSS 788 The following BLAST results are available for this feature:
BLAST of FC920743 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 4
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC920743 ID=FC920743; Name=FC920743; organism=Citrus clementina; type=EST; length=679bpback to top |