FC920744

Overview
NameFC920744
Unique NameFC920744
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14188 contig Ccv1_Contig14188:1..701. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920744 vs. ExPASy Swiss-Prot
Match: ILR3_ARATH (Transcription factor ILR3 OS=Arabidopsis thaliana GN=ILR3 PE=1 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.405e-36
Identity = 93/173 (53.76%), Postives = 106/173 (61.27%), Query Frame = 2
Query:  134 MSSPYNSNWIFDCGLLD-DIGVSGGDLPSLDPPEVLWSSSTSNPPLSAEFNDSFGNLDAFKETGSRKRVXXXXXXXXXXXXXXEKMRRDRLNDRFMELASILDPGRPPKMDKTVLLAGAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVK 649
            M SP N+NWI  C L+D D G      P    P       +SN   SA  + S GN +A KE GS+KR               EK RRDRLND+FMEL +IL+PG PPK DK  +L  AV+MVTQLR EAQKLK SN  L  KI ELK EKNELRDEKQRLK EKE LE+Q+K
Sbjct:    1 MVSPENANWI--CDLIDADYGSFTIQGPGFSWPVQQPIGVSSNS--SAGVDGSAGNSEASKEPGSKKRGRCESSSATSSKACREKQRRDRLNDKFMELGAILEPGNPPKTDKAAILVDAVRMVTQLRGEAQKLKDSNSSLQDKIKELKTEKNELRDEKQRLKTEKEKLEQQLK 169          
BLAST of FC920744 vs. ExPASy Swiss-Prot
Match: BH115_ARATH (Transcription factor bHLH115 OS=Arabidopsis thaliana GN=BHLH115 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.308e-31
Identity = 79/172 (45.93%), Postives = 103/172 (59.88%), Query Frame = 2
Query:  134 MSSPYNSNWIFDCGLLDDIGVSGGDLPSLDPPEVLWSSSTSNPPLSAEFNDSFGNLDAFKETGSRKRVXXXXXXXXXXXXXXEKMRRDRLNDRFMELASILDPGRPPKMDKTVLLAGAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVK 649
            M SP N+NW+ D  L++  G      P+   P  +  S+T    +S E +    + D  KE  SRKR+              EK RRDRLND+F EL+S+L+PGR PK DK  ++  A++MV Q RDEAQKLK  N  L  KI ELK EKNELRDEKQ+LK EKE +++Q+K
Sbjct:    1 MVSPENTNWLSDYPLIE--GAFSDQNPTF--PWQIDGSAT----VSVEVDGFLCDADVIKEPSSRKRIKTESCTGSNSKACREKQRRDRLNDKFTELSSVLEPGRTPKTDKVAIINDAIRMVNQARDEAQKLKDLNSSLQEKIKELKDEKNELRDEKQKLKVEKERIDQQLK 164          
BLAST of FC920744 vs. ExPASy Swiss-Prot
Match: BH034_ARATH (Transcription factor bHLH34 OS=Arabidopsis thaliana GN=BHLH34 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.306e-23
Identity = 55/116 (47.41%), Postives = 80/116 (68.97%), Query Frame = 2
Query:  302 DAFKETGSRKRVXXXXXXXXXXXXXXEKMRRDRLNDRFMELASILDPGRPPKMDKTVLLAGAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVK 649
            + F+E  S KR               EK+RR++LND+FM+L+S+L+PGR PK DK+ +L  A+++V QLR EA +L+ +N+KLL +I  LK +KNELR+EK  LK EKE +E+Q+K
Sbjct:  145 EEFEEECSGKRRRTGSCSKPGTKACREKLRREKLNDKFMDLSSVLEPGRTPKTDKSAILDDAIRVVNQLRGEAHELQETNQKLLEEIKSLKADKNELREEKLVLKAEKEKMEQQLK 260          
BLAST of FC920744 vs. ExPASy Swiss-Prot
Match: BH104_ARATH (Transcription factor bHLH104 OS=Arabidopsis thaliana GN=BHLH104 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.143e-22
Identity = 50/90 (55.56%), Postives = 72/90 (80.00%), Query Frame = 2
Query:  380 EKMRRDRLNDRFMELASILDPGRPPKMDKTVLLAGAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVK 649
            E++RR++LN+RFM+L+S+L+PGR PK DK  +L  A++++ QLRDEA KL+ +N+KLL +I  LK EKNELR+EK  LK +KE  E+Q+K
Sbjct:  139 ERLRREKLNERFMDLSSVLEPGRTPKTDKPAILDDAIRILNQLRDEALKLEETNQKLLEEIKSLKAEKNELREEKLVLKADKEKTEQQLK 228          
BLAST of FC920744 vs. ExPASy Swiss-Prot
Match: BH121_ARATH (Transcription factor bHLH121 OS=Arabidopsis thaliana GN=BHLH121 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.785e-14
Identity = 41/88 (46.59%), Postives = 57/88 (64.77%), Query Frame = 2
Query:  380 EKMRRDRLNDRFMELASILDPGRPPKMDKTVLLAGAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQ 643
            EK+RR++LN+ F+EL ++LDP RP K DK  +L   VQ++ +L  E  KLK     L  +  EL  EKN+LR+EK  LK++ ENL  Q
Sbjct:   67 EKLRREKLNEHFVELGNVLDPERP-KNDKATILTDTVQLLKELTSEVNKLKSEYTALTDESRELTQEKNDLREEKTSLKSDIENLNLQ 153          
BLAST of FC920744 vs. ExPASy Swiss-Prot
Match: BH011_ARATH (Transcription factor bHLH11 OS=Arabidopsis thaliana GN=BHLH11 PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 5.849e-12
Identity = 38/88 (43.18%), Postives = 56/88 (63.64%), Query Frame = 2
Query:  380 EKMRRDRLNDRFMELASILDPGRPPKMDKTVLLAGAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQ 643
            EK+RRD+L ++F+EL + LDP RP K DK  +L   +QM+  + ++  +LK   E L  +  EL  EK+ELR+EK  LK++ E L  Q
Sbjct:   53 EKLRRDKLKEQFLELGNALDPNRP-KSDKASVLTDTIQMLKDVMNQVDRLKAEYETLSQESRELIQEKSELREEKATLKSDIEILNAQ 139          
The following BLAST results are available for this feature:
BLAST of FC920744 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
ILR3_ARATH3.405e-3653.76Transcription factor ILR3 OS=Arabidopsis thaliana ... [more]
BH115_ARATH4.308e-3145.93Transcription factor bHLH115 OS=Arabidopsis thalia... [more]
BH034_ARATH3.306e-2347.41Transcription factor bHLH34 OS=Arabidopsis thalian... [more]
BH104_ARATH2.143e-2255.56Transcription factor bHLH104 OS=Arabidopsis thalia... [more]
BH121_ARATH4.785e-1446.59Transcription factor bHLH121 OS=Arabidopsis thalia... [more]
BH011_ARATH5.849e-1243.18Transcription factor bHLH11 OS=Arabidopsis thalian... [more]
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Properties
Property NameValue
Genbank descriptionC32012E07EF RVDevelop1 Citrus clementina cDNA clone C32012E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920744 ID=FC920744; Name=FC920744; organism=Citrus clementina; type=EST; length=700bp
ACGAACCAACCCAGTTCCCTCGTTCCACTTTTATGATCTTTTTCATTCCT
AAGGCACGCCGTTTGACTCGTAACATCATCATCACATTGCCATTGCCAGT
GAGACTCAGCCGCATTATAACGGAGCAGGAGATATGTCATCACCCTATAA
TTCCAACTGGATATTCGATTGTGGTTTGTTAGATGACATTGGAGTCTCTG
GGGGCGACCTCCCCTCCCTTGATCCTCCGGAGGTTCTTTGGTCTTCTTCC
ACCTCAAATCCTCCTCTCAGTGCGGAATTCAATGATTCCTTTGGCAATTT
GGATGCTTTCAAGGAAACTGGCTCCAGGAAAAGGGTGAGATCTGGATCCT
GCAGTGCATCTGGTTCTAAAGCTTGTAGAGAGAAAATGCGAAGAGATAGG
CTGAATGACAGGTTCATGGAATTGGCTTCTATTCTGGATCCTGGGAGGCC
TCCTAAAATGGACAAGACAGTTTTATTGGCTGGTGCTGTTCAGATGGTGA
CTCAACTGCGTGATGAAGCTCAAAAACTTAAGGTGTCAAATGAAAAGCTG
TTGGGGAAGATCAATGAATTAAAGTGTGAGAAGAATGAGCTTCGTGACGA
GAAACAGAGGCTAAAAAATGAGAAGGAAAATCTTGAGAGGCAAGTAAAGC
CTTGAGTTCTCAGCCTGCCTTCTTACTCATCCTCCTCAGTCCCGGCTCCA
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