FC920751

Overview
NameFC920751
Unique NameFC920751
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6470 contig Ccv1_Contig6470:63..786. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920751 vs. ExPASy Swiss-Prot
Match: HIBCH_SCHPO (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Schizosaccharomyces pombe GN=ehd3 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.406e-37
Identity = 76/164 (46.34%), Postives = 110/164 (67.07%), Query Frame = 3
Query:  231 SQEDQVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGA-----KFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFFVRLPGFFGEYVG 707
            S  D VL E  +  RI TLNRP+ LNA++  MI  +L      E  +  K++ILKG GR+F +GGD+ A    I +G        F++E+ L++ +ATY KP V+++NGI MGGG+G+++H  FR+A E+++FAMPET +G F D+ AS+FF RLPG+FG Y+G
Sbjct:   53 SSNDTVLYESKNGARIFTLNRPKVLNAINVDMIDSILPKLVSLEESNLAKVIILKGNGRSFSSGGDIKAAALSIQDGKLPEVRHAFAQEYRLSHTLATYQKPVVALMNGITMGGGSGLAMHVPFRIACEDTMFAMPETGIGYFTDVAASFFFSRLPGYFGTYLG 216          
BLAST of FC920751 vs. ExPASy Swiss-Prot
Match: HIBCH_XENTR (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Xenopus tropicalis GN=hibch PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.836e-37
Identity = 83/185 (44.86%), Postives = 116/185 (62.70%), Query Frame = 3
Query:  174 IRLPVFPALS---SSFKMASAQSQEDQVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKG-RAFCAGGDVAAVVRGINEGAK----FFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFFVRLPGFFGEYV 704
            +RL VF  L       +M +   ++ + L  +     ++TLNRP+ LNAL+  MI  +      +E D    L+I+KG G +AFCAGGD+ AV      G +    FF +E+ILN  + TY KP V++++GI MGGG G+S+HG FRVA+EN++FAMPETA+GLFPD+G  YF  RLPG  G Y+
Sbjct:   10 LRLKVFGRLQVIRQHLRMTNHTVKDGECLLTKAGCAGVITLNRPKALNALNLGMIRLIYPQLGLWEEDPETYLVIIKGVGGKAFCAGGDIRAVTDAGKAGDRLAQDFFREEYILNNAIGTYKKPYVALIDGITMGGGVGLSVHGHFRVASENTLFAMPETAIGLFPDVGGGYFLPRLPGKLGLYL 194          
BLAST of FC920751 vs. ExPASy Swiss-Prot
Match: HIBCH_DANRE (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Danio rerio GN=hibch PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.131e-37
Identity = 75/159 (47.17%), Postives = 107/159 (67.30%), Query Frame = 3
Query:  243 QVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKG-RAFCAGGDVAAVVRGINEG----AKFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFFVRLPGFFGEYV 704
            +VL E+     ++TLNRP+ LNAL+  MI  +    ++++ DS   ++I+KG G +AFCAGGD+ A+      G      FF +E+ILN  + TY KP V+++NGI MGGG G+S+HG+FRVATE ++FAMPET +GLFPD+G  YF  RL G  G ++
Sbjct:   33 EVLFEKVGKAGVITLNRPKALNALTLNMIRHIYPQLKKWDKDSETDIVIIKGAGEKAFCAGGDIRAIAEAGKAGNLLSQVFFREEYILNNTIGTYQKPYVALINGITMGGGVGLSVHGQFRVATEKTLFAMPETGIGLFPDVGGGYFLPRLQGKLGLFL 191          
BLAST of FC920751 vs. ExPASy Swiss-Prot
Match: HIBCH_BOVIN (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Bos taurus GN=HIBCH PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.522e-36
Identity = 78/169 (46.15%), Postives = 109/169 (64.50%), Query Frame = 3
Query:  213 KMASAQSQEDQVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKG-RAFCAGGDVAAVVRGINEGAKF----FSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFFVRLPGFFGEYV 704
            KM++      +VL E      ++TLNRPR LN L+  MI ++    +++E D    L+I+KG G +AFCAGGD+ A+    N   K     F +E+ILN  + +  KP +++++GI MGGG GVS+HG+FRVATE SVFAMPETA+GLFPD+G  YF  RL G  G ++
Sbjct:   27 KMSNHTDAAAEVLLERKGCAGVITLNRPRFLNTLTLGMIRQIYAQLKKWEQDPKTFLIIIKGAGEKAFCAGGDIRALSEARNTNQKMLQDLFREEYILNNAIDSCQKPYIALIHGITMGGGVGVSVHGQFRVATEKSVFAMPETAIGLFPDVGGGYFLPRLQGKLGYFL 195          
BLAST of FC920751 vs. ExPASy Swiss-Prot
Match: HIBCH_RAT (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Rattus norvegicus GN=Hibch PE=1 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 1.007e-35
Identity = 76/166 (45.78%), Postives = 109/166 (65.66%), Query Frame = 3
Query:  222 SAQSQEDQVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKG-RAFCAGGDVAAVVRGINEGAKF----FSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFFVRLPGFFGEYV 704
            S  ++  +VL E      ++TLNRP+ LNALS  MI ++    +++E D +  L+I+KG G +AFCAGGD+ A+      G       F +E+ILN  +A+  KP V++++GI MGGG G+S+HG+FRVATE S+FAMPET +GLFPD+G  YF  RL G  G ++
Sbjct:   29 SKHTETAEVLLERRGCAGVITLNRPKLLNALSLNMIRQIYPQLKKWERDPDTFLIIIKGAGGKAFCAGGDIKALSEAKKAGQTLSQDLFREEYILNNAIASCQKPYVALIDGITMGGGVGLSVHGQFRVATERSLFAMPETGIGLFPDVGGGYFLPRLQGKLGYFL 194          
BLAST of FC920751 vs. ExPASy Swiss-Prot
Match: HIBCH_XENLA (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Xenopus laevis GN=hibch PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.931e-35
Identity = 80/185 (43.24%), Postives = 115/185 (62.16%), Query Frame = 3
Query:  174 IRLPVFPALS---SSFKMASAQSQEDQVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKG-RAFCAGGDVAAVVRGINEGAK----FFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFFVRLPGFFGEYV 704
            +RL VF  L       +M++   ++   L  +     ++TLNRP+ LNAL+  MI ++    + +E D    L+I+KG G +AFCAGGD+ AV      G +    FF +E+ILN  + T  KP V++++GI MGGG G+S+HG FRVA+E ++FAMPETA+GLFPD+G  YF  RL G  G Y+
Sbjct:   10 LRLKVFGRLQVIRQHLRMSNHTVKDGGCLLTKAGCAGVITLNRPKALNALNLGMIRQIYPQLKLWEEDPETYLVIIKGAGGKAFCAGGDIRAVTDAGKVGDRLAQDFFREEYILNNAIGTCKKPYVAVIDGITMGGGVGLSVHGHFRVASEKTLFAMPETAIGLFPDVGGGYFLPRLTGKLGLYL 194          
BLAST of FC920751 vs. ExPASy Swiss-Prot
Match: HIBCH_HUMAN (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Homo sapiens GN=HIBCH PE=1 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 8.528e-35
Identity = 73/169 (43.20%), Postives = 109/169 (64.50%), Query Frame = 3
Query:  213 KMASAQSQEDQVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKG-RAFCAGGDVAAVVRGINEGAK----FFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFFVRLPGFFGEYV 704
            +M+      ++VL E+     ++TLNRP+ LNAL+  MI ++    +++E D    L+I+KG G +AFCAGGD+  +        K    FF +E++LN  + +  KP V++++GI MGGG G+S+HG+FRVATE  +FAMPETA+GLFPD+G  YF  RL G  G ++
Sbjct:   27 RMSKHTDAAEEVLLEKKGCTGVITLNRPKFLNALTLNMIRQIYPQLKKWEQDPETFLIIIKGAGGKAFCAGGDIRVISEAEKAKQKIAPVFFREEYMLNNAVGSCQKPYVALIHGITMGGGVGLSVHGQFRVATEKCLFAMPETAIGLFPDVGGGYFLPRLQGKLGYFL 195          
BLAST of FC920751 vs. ExPASy Swiss-Prot
Match: HIBCH_MOUSE (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Mus musculus GN=Hibch PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.900e-34
Identity = 76/166 (45.78%), Postives = 108/166 (65.06%), Query Frame = 3
Query:  222 SAQSQEDQVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKG-RAFCAGGDVAAVVRGI----NEGAKFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFFVRLPGFFGEYV 704
            S  ++  +VL E      ++TLNRP+ LNALS  MI ++    + +E D +  L+I+KG G +AFCAGGD+ A+        N     F +E+ILN  +A+  KP V++++GI MGGG G+S+HG+FRVATE S+FAMPET +GLFPD+G  YF  RL G  G ++
Sbjct:   29 SMHTEAAEVLLERRGCGGVITLNRPKFLNALSLNMIRQIYPQLKTWEQDPDTFLIIIKGAGGKAFCAGGDIKALSEAKKARQNLTQDLFREEYILNNAIASCQKPYVALIDGITMGGGVGLSVHGQFRVATERSLFAMPETGIGLFPDVGGGYFLPRLQGKLGYFL 194          
BLAST of FC920751 vs. ExPASy Swiss-Prot
Match: HIBCH_CHICK (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Gallus gallus GN=HIBCH PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 7.219e-34
Identity = 75/155 (48.39%), Postives = 102/155 (65.81%), Query Frame = 3
Query:  246 VLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKG-RAFCAGGDVAAVVRGINEG----AKFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFFVRLPGFFG 695
            VL ++     I+TLNRP+ LNALS +MI ++    + +E D    L+I+KG G +AFCAGGDV A+      G      +F +E+ L+  + T  KP V++++GI MGGG G+S+HG FRVATE +VFAMPETA+GLFPD+G  YF  RL G  G
Sbjct:   37 VLLQKQGGAGIITLNRPKVLNALSFKMIQQIYPQIKAWEQDPETFLIIIKGTGEKAFCAGGDVRAIADAGKAGDTMTRDYFREEYRLDNAIGTCKKPYVALIDGITMGGGVGLSVHGHFRVATEKTVFAMPETAIGLFPDVGGGYFLPRLSGKIG 191          
BLAST of FC920751 vs. ExPASy Swiss-Prot
Match: HIBCH_DICDI (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Dictyostelium discoideum GN=hibch PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.322e-32
Identity = 77/171 (45.03%), Postives = 111/171 (64.91%), Query Frame = 3
Query:  231 SQEDQVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVK-LLILKGKG-RAFCAGGDVAAVV--RGINEGAK---------FFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFFVRLPGFFGEYV 704
            S E+ + E++   +++L LNRP+ LNAL+  M+  L   +   +T  + + ++++KG G +AFCAGGD+ A+   + +NE  K         FF +E+ILN L+ T    QVSI NG  MGGG G+S+HG+FRVATEN+VFAMPET +G F D+G SYF  RLP  +G Y+
Sbjct:   21 STEEVLFEKKGKCLKVL-LNRPKALNALNPNMVKILTPKYLEMKTKKDGEGVIVMKGAGEKAFCAGGDIRAIYDYKQLNEEQKSKTNDIGDLFFREEYILNNLIGTNPIAQVSIYNGFAMGGGIGLSVHGKFRVATENTVFAMPETGIGFFCDVGGSYFLPRLPNNYGMYL 190          
The following BLAST results are available for this feature:
BLAST of FC920751 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
HIBCH_SCHPO1.406e-3746.343-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]
HIBCH_XENTR1.836e-3744.863-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]
HIBCH_DANRE3.131e-3747.173-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]
HIBCH_BOVIN4.522e-3646.153-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]
HIBCH_RAT1.007e-3545.783-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]
HIBCH_XENLA2.931e-3543.243-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]
HIBCH_HUMAN8.528e-3543.203-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]
HIBCH_MOUSE1.900e-3445.783-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]
HIBCH_CHICK7.219e-3448.393-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]
HIBCH_DICDI2.322e-3245.033-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32012F02EF RVDevelop1 Citrus clementina cDNA clone C32012F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920751 ID=FC920751; Name=FC920751; organism=Citrus clementina; type=EST; length=709bp
GAACTCGCGCCTGATGAGATGTCAAACGCCTTGCCCCTGCGGCCACGGTG
ACGTCTCTCAAAAAGTTGTCCATATCTCTCTTGCAAACGTTCTGAAGATG
AACCAAACCTGTCTGTAATAACTTGTGATTGGTGAATTGAATCGAGAGAG
AAGAGATCGTTTCCGCATTCCCTATTCGTCTTCCCGTTTTTCCAGCTCTA
TCAAGTTCGTTCAAGATGGCTTCCGCTCAATCACAGGAAGACCAGGTCTT
AGAAGAAGAGACCTCATTTGTAAGAATATTGACACTAAACAGGCCCAGGC
AATTGAATGCACTTTCAGCTCAAATGATTTCTCGGTTATTGGAACTTTTC
CAGCGCTATGAGACCGATTCGAACGTGAAGCTCTTAATTCTCAAGGGAAA
AGGAAGGGCATTTTGTGCTGGTGGTGATGTGGCCGCAGTTGTTCGCGGTA
TTAATGAGGGTGCCAAATTCTTTTCCAAGGAGTTCATCCTGAATTATTTG
ATGGCAACGTACACCAAACCCCAGGTTTCAATTCTTAATGGAATTGTCAT
GGGAGGTGGGGCTGGTGTTTCAATACATGGTAGATTCCGAGTTGCTACTG
AGAATTCGGTATTTGCAATGCCTGAGACAGCTTTGGGACTTTTCCCAGAT
ATTGGTGCCTCTTATTTCTTTGTCAGACTCCCTGGATTCTTCGGAGAATA
TGTTGGTCT
back to top