FC920754

Overview
NameFC920754
Unique NameFC920754
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length734
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14191 contig Ccv1_Contig14191:1..734. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920754 vs. ExPASy Swiss-Prot
Match: ALG13_HUMAN (UDP-N-acetylglucosamine transferase subunit ALG13 homolog OS=Homo sapiens GN=ALG13 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.147e-21
Identity = 52/110 (47.27%), Postives = 71/110 (64.55%), Query Frame = 3
Query:  327 RIVFVTVGTTCFDALVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPTKSLGEDGLMAVDYFTFSSSIADHLRSASLVISHAGSGSIFETLRHGKPLIVVVNEDLMDNHQ 656
            + VFVTVGTT FD L+  V   +  Q++   GY  L++Q+GRGT VP     E     +D + +  S+ + ++ A LVISHAG+GS  ETL  GKPL+VV+NE LM+NHQ
Sbjct:    2 KCVFVTVGTTSFDDLIACVSAPDSLQKIESLGYNRLILQIGRGTVVPEPFSTES--FTLDVYRYKDSLKEDIQKADLVISHAGAGSCLETLEKGKPLVVVINEKLMNNHQ 109          
BLAST of FC920754 vs. ExPASy Swiss-Prot
Match: ALG13_MOUSE (UDP-N-acetylglucosamine transferase subunit ALG13 homolog OS=Mus musculus GN=Alg13 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.957e-21
Identity = 55/107 (51.40%), Postives = 69/107 (64.49%), Query Frame = 3
Query:  336 FVTVGTTCFDALVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPTKSLGEDGLMAVDYFTFSSSIADHLRSASLVISHAGSGSIFETLRHGKPLIVVVNEDLMDNHQ 656
            FVTVGTT FD LV  V   +  Q L   GY HL++Q+GRGT VP     E     +D + +  S+ + L+ A LVISHAG+GS  E+L  GKPL+VVVNE LM+NHQ
Sbjct:    5 FVTVGTTSFDELVARVVANDCVQILESLGYNHLVLQVGRGTVVPKPFRTES--FTLDVYRYKDSLKEDLQQADLVISHAGAGSCLESLEKGKPLVVVVNEKLMNNHQ 109          
BLAST of FC920754 vs. ExPASy Swiss-Prot
Match: ALG13_RAT (UDP-N-acetylglucosamine transferase subunit ALG13 homolog OS=Rattus norvegicus GN=Alg13 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.556e-21
Identity = 55/107 (51.40%), Postives = 69/107 (64.49%), Query Frame = 3
Query:  336 FVTVGTTCFDALVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPTKSLGEDGLMAVDYFTFSSSIADHLRSASLVISHAGSGSIFETLRHGKPLIVVVNEDLMDNHQ 656
            FVTVGTT FD LV  V   +  Q L   GY HL++Q+GRGT VP     E     +D + +  S+ + L+ A LVISHAG+GS  E+L  GKPL+VVVNE LM+NHQ
Sbjct:    5 FVTVGTTSFDDLVARVVANDTVQILKSLGYNHLVLQIGRGTVVPEPFSTEP--FTLDVYRYKESLKEDLQQADLVISHAGAGSCLESLEKGKPLVVVVNEKLMNNHQ 109          
BLAST of FC920754 vs. ExPASy Swiss-Prot
Match: ALG13_SCHPO (UDP-N-acetylglucosamine transferase subunit alg13 OS=Schizosaccharomyces pombe GN=alg13 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.819e-17
Identity = 50/109 (45.87%), Postives = 69/109 (63.30%), Query Frame = 3
Query:  336 FVTVGTTCFDALVKAVDTLEVKQELTRRGYTHLLIQMGRG--TYVPTKSLGEDGLMAVDYFTFSSSIADHLRSASLVISHAGSGSIFETLRHGKPLIVVVNEDLMDNHQ 656
            FVTVG+T FD L++AV   E +  L + G   L++Q G+G   +   KS+    ++  DY   +  I  ++  AS+VISHAG+GSI +TLR GK L+VV NE LMDNHQ
Sbjct:    4 FVTVGSTQFDDLIRAVLKPEFQHCLVKHGINQLIVQYGKGKQAFGDPKSVAGLTILGFDY---APEIESYIHDASIVISHAGAGSILQTLRSGKRLLVVPNESLMDNHQ 109          
BLAST of FC920754 vs. ExPASy Swiss-Prot
Match: ALG13_YARLI (UDP-N-acetylglucosamine transferase subunit ALG13 OS=Yarrowia lipolytica GN=ALG13 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.040e-14
Identity = 42/109 (38.53%), Postives = 67/109 (61.47%), Query Frame = 3
Query:  330 IVFVTVGTTCFDALVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPTKSLGEDGLMAVDYFTFSSSIADHLRSASLVISHAGSGSIFETLRHGKPLIVVVNEDLMDNHQ 656
            ++  T GT  F+AL++ V + E    L++ G++ + +Q GRG         ++G+M++  F ++  +A  +  A LVISHAG+GS+ + LR GK  +VVVN  LMDNHQ
Sbjct:   30 VLVTTGGTVPFEALIELVLSHESITTLSQLGFSKMRVQYGRGNRHIFTKHHKEGVMSITGFEYTDDLAGEMSRAHLVISHAGTGSVLDALRIGKHPVVVVNSKLMDNHQ 138          
BLAST of FC920754 vs. ExPASy Swiss-Prot
Match: ALG13_ASPFU (UDP-N-acetylglucosamine transferase subunit alg13 OS=Aspergillus fumigatus GN=alg13 PE=3 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 4.370e-13
Identity = 52/154 (33.77%), Postives = 70/154 (45.45%), Query Frame = 3
Query:  327 RIVFVTVGTTC-FDALVKAVDTLEVKQELTRRGYTHLLIQMGRGTYV-------------PTKSLGEDGLMAVDY-----FTFSSSIADHLRSASLVISHAGSGSIFETLRHGKPLIVVVNEDLMDNHQSXXXXXXXXXXXXYCAHPQSLHQVI 731
            ++ FVTVG T  F+ LV+A         L   GY+HLL+Q G+   +             P + +   G    ++     F  + +     RS  LVISHAGSG+I E LR G PLIVV N  L DNHQ               +H Q+L Q +
Sbjct:    5 KVCFVTVGATASFEELVRAALDPSFVTALEENGYSHLLVQYGKNAVIYENFLKQYPPERRPWRRINISGFSFHEHGLGGDFALAQADISKGRSGGLVISHAGSGTILEVLRMGIPLIVVPNPSLQDNHQEELARQLQKQGYVVASHYQNLCQAL 158          
The following BLAST results are available for this feature:
BLAST of FC920754 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
ALG13_HUMAN1.147e-2147.27UDP-N-acetylglucosamine transferase subunit ALG13 ... [more]
ALG13_MOUSE1.957e-2151.40UDP-N-acetylglucosamine transferase subunit ALG13 ... [more]
ALG13_RAT2.556e-2151.40UDP-N-acetylglucosamine transferase subunit ALG13 ... [more]
ALG13_SCHPO3.819e-1745.87UDP-N-acetylglucosamine transferase subunit alg13 ... [more]
ALG13_YARLI1.040e-1438.53UDP-N-acetylglucosamine transferase subunit ALG13 ... [more]
ALG13_ASPFU4.370e-1333.77UDP-N-acetylglucosamine transferase subunit alg13 ... [more]
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Properties
Property NameValue
Genbank descriptionC32012F05EF RVDevelop1 Citrus clementina cDNA clone C32012F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920754 ID=FC920754; Name=FC920754; organism=Citrus clementina; type=EST; length=734bp
GGAACAAAACATAGCACAGAGACCAGAACGCCAAGGAAAAACTCTAATTT
TCAATGCAAAACACACGCTGCCGTTGCAAACAGGCTTAACGCCCGCCCCT
TGACACCGCTGCTTTCTGTTACTGCTGCCGCGTGACCCGTGCTGTTTGTT
GGATCGCTCACCACGGTTGTTGCCAGTCAATCGCCGACTGTGCTTGCTAT
TTTGCCAAGCTACGGCTTCACGGCCGTCATCAAAGGCTTAGTGGTGGTGT
ACATTTTGGACAAAACCGAATCATAGATAACGAGAAATTCGAGATGGGAG
ATACTAGGGATAGTGTGAGCTTGAAGAGAATTGTGTTCGTAACAGTCGGA
ACAACATGTTTTGATGCTCTTGTGAAAGCGGTGGATACTTTAGAAGTAAA
ACAAGAGTTGACAAGAAGAGGATATACCCATCTTCTCATTCAAATGGGTC
GAGGAACCTATGTACCTACTAAGTCCCTTGGAGAAGACGGCCTCATGGCT
GTAGACTACTTTACTTTTTCGTCAAGCATTGCAGACCATCTAAGGTCTGC
ATCTCTTGTAATCAGTCATGCCGGGTCAGGGAGCATATTTGAGACCTTAC
GGCATGGTAAACCTTTGATAGTGGTGGTGAATGAAGACTTAATGGACAAT
CATCAGAGTGAGCTAGCAGAAGAACTAGCAGCGAGGAAAGCATTATATTG
TGCTCATCCTCAATCCCTTCATCAGGTTATAGCT
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