FC920755
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC920755 vs. ExPASy Swiss-Prot
Match: MIS3_SCHPO (Ribosomal RNA assembly protein mis3 OS=Schizosaccharomyces pombe GN=mis3 PE=2 SV=1) HSP 1 Score: 202.216 bits (513), Expect = 2.243e-51 Identity = 99/153 (64.71%), Postives = 122/153 (79.74%), Query Frame = 1 Query: 253 WDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGHLVRNKERFVKRRQHLVGPNSSTLKAL*ILTGCYI 711 WD D +IDHWK+E F ++ LE SSF+TLFP+YREKYL+E WP V AL ++G++C L+LVEGSMTV TTRKT DPY I+ ARDLI+LL+RSVP PQA+KI+ D + CDIIKIG+++RNKERFVKRRQ L+G N TLKAL +LT CYI Sbjct: 26 WDTD-DIDHWKIEPFTKDDSKESFLEESSFATLFPKYREKYLREVWPHVTRALDKFGITCVLDLVEGSMTVKTTRKTFDPYSILDARDLIKLLARSVPFPQAVKIMQDGVACDIIKIGNILRNKERFVKRRQRLIGTNGQTLKALELLTQCYI 177
BLAST of FC920755 vs. ExPASy Swiss-Prot
Match: KRR1_YEAST (Ribosomal RNA assembly protein KRR1 OS=Saccharomyces cerevisiae GN=KRR1 PE=1 SV=1) HSP 1 Score: 191.815 bits (486), Expect = 3.031e-48 Identity = 99/155 (63.87%), Postives = 118/155 (76.13%), Query Frame = 1 Query: 253 WDEDPNIDHWKVEKFDPFWNEGGM--LEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGHLVRNKERFVKRRQHLVGPNSSTLKAL*ILTGCYI 711 WD D +ID WK+E+F N G E SSF TLFP+YRE YL+ W V AL ++ ++C L+LVEGSMTV TTRKT DP II+KARDLI+LL+RSVP PQA+KIL D+M CD+IKIG+ V NKERFVKRRQ LVGPN +TLKAL +LT CYI Sbjct: 11 WDTD-DIDKWKIEEFKEEDNASGQPFAEESSFMTLFPKYRESYLKTIWNDVTRALDKHNIACVLDLVEGSMTVKTTRKTYDPAIILKARDLIKLLARSVPFPQAVKILQDDMACDVIKIGNFVTNKERFVKRRQRLVGPNGNTLKALELLTKCYI 164
BLAST of FC920755 vs. ExPASy Swiss-Prot
Match: KRR1_HUMAN (KRR1 small subunit processome component homolog OS=Homo sapiens GN=KRR1 PE=1 SV=4) HSP 1 Score: 190.274 bits (482), Expect = 8.819e-48 Identity = 94/146 (64.38%), Postives = 115/146 (78.77%), Query Frame = 1 Query: 274 DHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGHLVRNKERFVKRRQHLVGPNSSTLKAL*ILTGCYI 711 D WK F N G+LE SSF+TLFP+YRE YL+E WP+V+ AL E+ V+ L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++IL D++ CDIIKIG LVRNKERFVKRRQ L+GP STLKAL +LT CYI Sbjct: 38 DGWKEPAFSKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVRILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYI 183
BLAST of FC920755 vs. ExPASy Swiss-Prot
Match: KRR1_BOVIN (KRR1 small subunit processome component homolog OS=Bos taurus GN=KRR1 PE=2 SV=1) HSP 1 Score: 190.274 bits (482), Expect = 8.819e-48 Identity = 94/146 (64.38%), Postives = 115/146 (78.77%), Query Frame = 1 Query: 274 DHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGHLVRNKERFVKRRQHLVGPNSSTLKAL*ILTGCYI 711 D WK F N G+LE SSF+TLFP+YRE YL+E WP+V+ AL E+ ++ L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QAI+IL D++ CDIIKIG LVRNKERFVKRRQ L+GP STLKAL +LT CYI Sbjct: 38 DGWKEPAFSKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHINATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAIRILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYI 183
BLAST of FC920755 vs. ExPASy Swiss-Prot
Match: KRR1_MOUSE (KRR1 small subunit processome component homolog OS=Mus musculus GN=Krr1 PE=2 SV=1) HSP 1 Score: 189.504 bits (480), Expect = 1.504e-47 Identity = 93/146 (63.70%), Postives = 114/146 (78.08%), Query Frame = 1 Query: 274 DHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGHLVRNKERFVKRRQHLVGPNSSTLKAL*ILTGCYI 711 D WK F N G+LE SSF+TLFP+YRE YL+E WP+V+ AL E+ V L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++IL D++ CDIIKIG LVRNKERFVKRRQ L+GP STLKAL +LT CY+ Sbjct: 37 DGWKEPAFSKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHVKATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVRILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYV 182
BLAST of FC920755 vs. ExPASy Swiss-Prot
Match: KRR1_DICDI (KRR1 small subunit processome component homolog OS=Dictyostelium discoideum GN=krr1 PE=3 SV=1) HSP 1 Score: 175.252 bits (443), Expect = 2.936e-43 Identity = 84/126 (66.67%), Postives = 104/126 (82.54%), Query Frame = 1 Query: 334 SSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGHLVRNKERFVKRRQHLVGPNSSTLKAL*ILTGCYI 711 SSF+TLFP+YREKYLQE W +V+ L E+G+ C+L+L+EGSMTV+TT+K DP I+KARDLI+LLSRSVP A K+L+D+ CDIIKIG VRNKERFVKRRQ LVGP+ STLKA+ +LT CY+ Sbjct: 58 SSFATLFPKYREKYLQEIWKLVENVLHEHGIECKLDLIEGSMTVTTTKKCWDPVAILKARDLIKLLSRSVPFEHAQKVLNDDYNCDIIKIGGFVRNKERFVKRRQRLVGPDGSTLKAIELLTKCYV 183 The following BLAST results are available for this feature:
BLAST of FC920755 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 6
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC920755 ID=FC920755; Name=FC920755; organism=Citrus clementina; type=EST; length=712bpback to top |