FC920757

Overview
NameFC920757
Unique NameFC920757
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length738
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15093 contig Ccv1_Contig15093:708..1447. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920757 vs. ExPASy Swiss-Prot
Match: ERF1Z_ARATH (Eukaryotic peptide chain release factor subunit 1-3 OS=Arabidopsis thaliana GN=ERF1-3 PE=2 SV=1)

HSP 1 Score: 363.614 bits (932), Expect = 1.461e-107
Identity = 179/214 (83.64%), Postives = 194/214 (90.65%), Query Frame = 3
Query:    3 ARLRMEKSHNYVRKTAELATQFYLNPATSQPNVSGLVLAGSADFKTELSQSDMFDPRLQAKILKVVDVSYGGENGFNQAIELSAESLSNVKFIQEKRLIGKYFEEISQDTGKYVFGADDTLKALDMGAVDTLIVWENLDITRYVLKNTVTGEIVIKHLNREQETNQNNFRDSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNNHKRDPSF 644
            ARLRMEK HNYVRKTAELATQFY+NPATSQPNVSGL+LAGSADFKTELSQS++FDPRLQAKIL VVDVSYGGENGFNQAIELSAE LSNVKFIQEK+LIGKYFEEISQDTGKYVFG +DTLKAL+MGAV+TLIVWENLDI RY LKN  TGEIVIKHL ++QE NQ+NF D+ T+AELEVQEK  LLEWFANEY+RFGCTLEFVTN  +    F
Sbjct:  189 ARLRMEKRHNYVRKTAELATQFYINPATSQPNVSGLILAGSADFKTELSQSELFDPRLQAKILNVVDVSYGGENGFNQAIELSAEILSNVKFIQEKKLIGKYFEEISQDTGKYVFGVEDTLKALEMGAVETLIVWENLDINRYELKNNTTGEIVIKHLGKDQENNQSNFHDAETNAELEVQEKMPLLEWFANEYKRFGCTLEFVTNKSQEGSQF 402          

HSP 2 Score: 47.7506 bits (112), Expect = 1.461e-107
Identity = 20/23 (86.96%), Postives = 22/23 (95.65%), Query Frame = 2
Query:  620 QSQEGSQFCRGFGGIGGILRYSL 688
            +SQEGSQFCRGFGGIGG+LRY L
Sbjct:  395 KSQEGSQFCRGFGGIGGLLRYQL 417          
BLAST of FC920757 vs. ExPASy Swiss-Prot
Match: ERF1Y_ARATH (Eukaryotic peptide chain release factor subunit 1-2 OS=Arabidopsis thaliana GN=ERF1-2 PE=2 SV=1)

HSP 1 Score: 357.836 bits (917), Expect = 1.031e-105
Identity = 174/214 (81.31%), Postives = 194/214 (90.65%), Query Frame = 3
Query:    3 ARLRMEKSHNYVRKTAELATQFYLNPATSQPNVSGLVLAGSADFKTELSQSDMFDPRLQAKILKVVDVSYGGENGFNQAIELSAESLSNVKFIQEKRLIGKYFEEISQDTGKYVFGADDTLKALDMGAVDTLIVWENLDITRYVLKNTVTGEIVIKHLNREQETNQNNFRDSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNNHKRDPSF 644
            ARLRMEK HNYVRKTAELATQFY+NPATSQPNVSGL+LAGSADFKTELSQS++FDPRLQAKIL VVDVSYGGENGFNQAIELSAE LSNVKFIQEK+LIGKYFEEISQDTGKYVFG +DTLKAL+MGA++TLIVWENLDI RY LKN+ TGE+V+KH  ++QE++ +NF DS T+AELEVQEK  LLEWFANEY+RFGCTLEFVTN  +    F
Sbjct:  188 ARLRMEKRHNYVRKTAELATQFYINPATSQPNVSGLILAGSADFKTELSQSELFDPRLQAKILNVVDVSYGGENGFNQAIELSAEILSNVKFIQEKKLIGKYFEEISQDTGKYVFGVEDTLKALEMGAIETLIVWENLDINRYELKNSTTGEMVVKHFGKDQESDTSNFHDSETNAELEVQEKMPLLEWFANEYKRFGCTLEFVTNKSQEGSQF 401          

HSP 2 Score: 47.3654 bits (111), Expect = 1.031e-105
Identity = 20/23 (86.96%), Postives = 22/23 (95.65%), Query Frame = 2
Query:  620 QSQEGSQFCRGFGGIGGILRYSL 688
            +SQEGSQFCRGFGGIGG+LRY L
Sbjct:  394 KSQEGSQFCRGFGGIGGMLRYQL 416          
BLAST of FC920757 vs. ExPASy Swiss-Prot
Match: ERF1X_ARATH (Eukaryotic peptide chain release factor subunit 1-1 OS=Arabidopsis thaliana GN=ERF1-1 PE=2 SV=2)

HSP 1 Score: 345.895 bits (886), Expect = 1.767e-102
Identity = 170/214 (79.44%), Postives = 187/214 (87.38%), Query Frame = 3
Query:    3 ARLRMEKSHNYVRKTAELATQFYLNPATSQPNVSGLVLAGSADFKTELSQSDMFDPRLQAKILKVVDVSYGGENGFNQAIELSAESLSNVKFIQEKRLIGKYFEEISQDTGKYVFGADDTLKALDMGAVDTLIVWENLDITRYVLKNTVTGEIVIKHLNREQETNQNNFRDSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNNHKRDPSF 644
            ARLRMEK HNYVRKTAELATQ+Y+NPATSQPNVSGL+LAGSADFKTELSQSDMFDPRL AKIL VVDVSYGGENGFNQAIELSAE L+NVKFIQEKRLIGKYFEEISQDTGKYVFG +DTL AL+ GA++TLIVWENLDI RYV+KN+ TGE VIKHLN+EQE N  NF+ + +   L+V+EK SLLEW ANEYRRFGC LEFVTN  +    F
Sbjct:  190 ARLRMEKRHNYVRKTAELATQYYINPATSQPNVSGLILAGSADFKTELSQSDMFDPRLAAKILNVVDVSYGGENGFNQAIELSAEILANVKFIQEKRLIGKYFEEISQDTGKYVFGVEDTLNALESGAIETLIVWENLDINRYVMKNSATGETVIKHLNKEQEANTENFKVADSDLALDVEEKLSLLEWLANEYRRFGCALEFVTNKSQEGSQF 403          

HSP 2 Score: 48.521 bits (114), Expect = 1.767e-102
Identity = 21/23 (91.30%), Postives = 22/23 (95.65%), Query Frame = 2
Query:  620 QSQEGSQFCRGFGGIGGILRYSL 688
            +SQEGSQFCRGFGGIGGILRY L
Sbjct:  396 KSQEGSQFCRGFGGIGGILRYQL 418          
BLAST of FC920757 vs. ExPASy Swiss-Prot
Match: ERF1_DROME (Eukaryotic peptide chain release factor subunit 1 OS=Drosophila melanogaster GN=eRF1 PE=1 SV=2)

HSP 1 Score: 281.952 bits (720), Expect = 8.196e-82
Identity = 137/215 (63.72%), Postives = 170/215 (79.07%), Query Frame = 3
Query:    3 ARLRMEKSHNYVRKTAELATQFYLNPATSQPNVSGLVLAGSADFKTELSQSDMFDPRLQAKILKVVDVSYGGENGFNQAIELSAESLSNVKFIQEKRLIGKYFEEISQDTGKYVFGADDTLKALDMGAVDTLIVWENLDITRYVLKNTVTG-EIVIKHLNREQETNQNNFRDSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNNHKRDPSF 644
            ARLRMEK HNYVRK AE+ATQ ++     +PN++GL+LAGSADFKTELSQSDMFDPRLQ+K++K+VDVSYGGENGFNQAIEL+AESL NVKFIQEK+LIG+YF+EISQDTGKY FG +DTL+AL++G+V+TLI WENLDI RYVLKN        + HL  EQE ++++F D  +  E+E+ E   LLEW AN Y+ FG TLE +T+  +    F
Sbjct:  191 ARLRMEKRHNYVRKVAEVATQLFIT--NDKPNIAGLILAGSADFKTELSQSDMFDPRLQSKVIKLVDVSYGGENGFNQAIELAAESLQNVKFIQEKKLIGRYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHANSTSTTVLHLTPEQEKDKSHFTDKESGVEMELIESQPLLEWLANNYKMFGATLEIITDKSQEGSQF 403          

HSP 2 Score: 43.5134 bits (101), Expect = 8.196e-82
Identity = 19/23 (82.61%), Postives = 21/23 (91.30%), Query Frame = 2
Query:  620 QSQEGSQFCRGFGGIGGILRYSL 688
            +SQEGSQF RGFGGIGGILRY +
Sbjct:  396 KSQEGSQFVRGFGGIGGILRYKV 418          
BLAST of FC920757 vs. ExPASy Swiss-Prot
Match: ERF1_POLMI (Eukaryotic peptide chain release factor subunit 1 OS=Polyandrocarpa misakiensis GN=ERF1 PE=2 SV=1)

HSP 1 Score: 289.656 bits (740), Expect = 1.138e-77
Identity = 148/216 (68.52%), Postives = 169/216 (78.24%), Query Frame = 3
Query:    3 ARLRMEKSHNYVRKTAELATQFYLNPATSQPNVSGLVLAGSADFKTELSQSDMFDPRLQAKILKVVDVSYGGENGFNQAIELSAESLSNVKFIQEKRLIGKYFEEISQDTGKYVFGADDTLKALDMGAVDTLIVWENLDITRYVLKNTVTGEIVIKHLNREQETNQNNFRDSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNNHKRDPSFAE 650
            ARLRMEK HNYVRK AE A Q ++     +PNV+GLVLAGSADFKTELSQSDMFD RLQ KILK+VDVSYGGENGFNQAIELSAE LSNVKFIQEK+LIG+YF+EISQDTGKY FG DDTLKAL+MGAV+ LIVWENLD  RYVLKN  T E  I  L  +QE ++ +F D  T  E+E+ E  SLLEWFAN Y++FG TLE VT+  +    F +
Sbjct:  191 ARLRMEKRHNYVRKVAETAVQLFIT--NDRPNVTGLVLAGSADFKTELSQSDMFDQRLQVKILKLVDVSYGGENGFNQAIELSAEVLSNVKFIQEKKLIGRYFDEISQDTGKYCFGVDDTLKALEMGAVEILIVWENLDTMRYVLKNHTTDEEKILFLKPDQEKDKTHFTDKDTGVEMEMVESCSLLEWFANNYKKFGSTLEIVTDRSQEGSQFVK 404          
BLAST of FC920757 vs. ExPASy Swiss-Prot
Match: ERF1_CAEEL (Eukaryotic peptide chain release factor subunit 1 OS=Caenorhabditis elegans GN=erf-1 PE=2 SV=1)

HSP 1 Score: 257.684 bits (657), Expect = 7.486e-74
Identity = 127/214 (59.35%), Postives = 166/214 (77.57%), Query Frame = 3
Query:    3 ARLRMEKSHNYVRKTAELATQFYLNPATSQPNVSGLVLAGSADFKTELSQSDMFDPRLQAKILKVVDVSYGGENGFNQAIELSAESLSNVKFIQEKRLIGKYFEEISQDTGKYVFGADDTLKALDMGAVDTLIVWENLDITRYVLKNTVTGEIVIKHLNREQETNQNNFRDSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNNHKRDPSF 644
            ARLR EK HNYVRK AE + + ++     +  V+GL+LAGSADFKTEL QSDMFD RLQAK++K VD++YGGENGFNQAIEL+A++L++VKFIQEK+LIG YF+EISQDTGKYVFG  DTL AL+MGA++TLI WENLDI RY +KN++ GE ++ +L  ++E ++++F DS T  ++E+ E   LLEWFAN Y+ FG  LE VT+  +    F
Sbjct:  199 ARLRNEKRHNYVRKVAENSVEQFIK--NDKVTVAGLILAGSADFKTELGQSDMFDQRLQAKMIKTVDIAYGGENGFNQAIELAADTLASVKFIQEKKLIGGYFDEISQDTGKYVFGVKDTLAALEMGAIETLICWENLDIVRYKMKNSL-GEDILLNLRPDEEKDKSHFTDSETGQDMEIIETMPLLEWFANNYKNFGAALEIVTDKSQEGAQF 409          

HSP 2 Score: 41.2022 bits (95), Expect = 7.486e-74
Identity = 17/21 (80.95%), Postives = 20/21 (95.24%), Query Frame = 2
Query:  620 QSQEGSQFCRGFGGIGGILRY 682
            +SQEG+QF RGFGGIGG+LRY
Sbjct:  402 KSQEGAQFVRGFGGIGGLLRY 422          
BLAST of FC920757 vs. ExPASy Swiss-Prot
Match: ERF1_RAT (Eukaryotic peptide chain release factor subunit 1 OS=Rattus norvegicus GN=Etf1 PE=2 SV=3)

HSP 1 Score: 272.707 bits (696), Expect = 1.439e-72
Identity = 141/216 (65.28%), Postives = 168/216 (77.78%), Query Frame = 3
Query:    3 ARLRMEKSHNYVRKTAELATQFYLNPATSQPNVSGLVLAGSADFKTELSQSDMFDPRLQAKILKVVDVSYGGENGFNQAIELSAESLSNVKFIQEKRLIGKYFEEISQDTGKYVFGADDTLKALDMGAVDTLIVWENLDITRYVLKNTVTGEIVIKHLNREQETNQNNFRDSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNNHKRDPSFAE 650
            ARLRMEK HNYVRK AE A Q +++    + NV+GLVLAGSADFKTELSQSDMFD RLQ+K+LK+VD+SYGGENGFNQAIELS E LSNVKFIQEK+LIG+YF+EISQDTGKY FG +DTLKAL+MGAV+ LIV+ENLDI RYVL    T E  I +L  EQE ++++F D  T  E E+ E   LLEWFAN Y++FG TLE VT+  +    F +
Sbjct:  191 ARLRMEKRHNYVRKVAETAVQLFISG--DKVNVAGLVLAGSADFKTELSQSDMFDQRLQSKVLKLVDISYGGENGFNQAIELSTEVLSNVKFIQEKKLIGRYFDEISQDTGKYCFGVEDTLKALEMGAVEILIVYENLDIMRYVLHCQGTEEEKILYLTPEQEKDKSHFTDKETGQEHELIESMPLLEWFANNYKKFGATLEIVTDKSQEGSQFVK 404          
BLAST of FC920757 vs. ExPASy Swiss-Prot
Match: ERF1_RABIT (Eukaryotic peptide chain release factor subunit 1 OS=Oryctolagus cuniculus GN=ETF1 PE=2 SV=3)

HSP 1 Score: 272.707 bits (696), Expect = 1.439e-72
Identity = 141/216 (65.28%), Postives = 168/216 (77.78%), Query Frame = 3
Query:    3 ARLRMEKSHNYVRKTAELATQFYLNPATSQPNVSGLVLAGSADFKTELSQSDMFDPRLQAKILKVVDVSYGGENGFNQAIELSAESLSNVKFIQEKRLIGKYFEEISQDTGKYVFGADDTLKALDMGAVDTLIVWENLDITRYVLKNTVTGEIVIKHLNREQETNQNNFRDSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNNHKRDPSFAE 650
            ARLRMEK HNYVRK AE A Q +++    + NV+GLVLAGSADFKTELSQSDMFD RLQ+K+LK+VD+SYGGENGFNQAIELS E LSNVKFIQEK+LIG+YF+EISQDTGKY FG +DTLKAL+MGAV+ LIV+ENLDI RYVL    T E  I +L  EQE ++++F D  T  E E+ E   LLEWFAN Y++FG TLE VT+  +    F +
Sbjct:  191 ARLRMEKRHNYVRKVAETAVQLFISG--DKVNVAGLVLAGSADFKTELSQSDMFDQRLQSKVLKLVDISYGGENGFNQAIELSTEVLSNVKFIQEKKLIGRYFDEISQDTGKYCFGVEDTLKALEMGAVEILIVYENLDIMRYVLHCQGTEEEKILYLTPEQEKDKSHFTDKETGQEHELIESMPLLEWFANNYKKFGATLEIVTDKSQEGSQFVK 404          
BLAST of FC920757 vs. ExPASy Swiss-Prot
Match: ERF1_MOUSE (Eukaryotic peptide chain release factor subunit 1 OS=Mus musculus GN=Etf1 PE=1 SV=4)

HSP 1 Score: 272.707 bits (696), Expect = 1.439e-72
Identity = 141/216 (65.28%), Postives = 168/216 (77.78%), Query Frame = 3
Query:    3 ARLRMEKSHNYVRKTAELATQFYLNPATSQPNVSGLVLAGSADFKTELSQSDMFDPRLQAKILKVVDVSYGGENGFNQAIELSAESLSNVKFIQEKRLIGKYFEEISQDTGKYVFGADDTLKALDMGAVDTLIVWENLDITRYVLKNTVTGEIVIKHLNREQETNQNNFRDSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNNHKRDPSFAE 650
            ARLRMEK HNYVRK AE A Q +++    + NV+GLVLAGSADFKTELSQSDMFD RLQ+K+LK+VD+SYGGENGFNQAIELS E LSNVKFIQEK+LIG+YF+EISQDTGKY FG +DTLKAL+MGAV+ LIV+ENLDI RYVL    T E  I +L  EQE ++++F D  T  E E+ E   LLEWFAN Y++FG TLE VT+  +    F +
Sbjct:  191 ARLRMEKRHNYVRKVAETAVQLFISG--DKVNVAGLVLAGSADFKTELSQSDMFDQRLQSKVLKLVDISYGGENGFNQAIELSTEVLSNVKFIQEKKLIGRYFDEISQDTGKYCFGVEDTLKALEMGAVEILIVYENLDIMRYVLHCQGTEEEKILYLTPEQEKDKSHFTDKETGQEHELIESMPLLEWFANNYKKFGATLEIVTDKSQEGSQFVK 404          
BLAST of FC920757 vs. ExPASy Swiss-Prot
Match: ERF1_MESAU (Eukaryotic peptide chain release factor subunit 1 OS=Mesocricetus auratus GN=ETF1 PE=1 SV=3)

HSP 1 Score: 272.707 bits (696), Expect = 1.439e-72
Identity = 141/216 (65.28%), Postives = 168/216 (77.78%), Query Frame = 3
Query:    3 ARLRMEKSHNYVRKTAELATQFYLNPATSQPNVSGLVLAGSADFKTELSQSDMFDPRLQAKILKVVDVSYGGENGFNQAIELSAESLSNVKFIQEKRLIGKYFEEISQDTGKYVFGADDTLKALDMGAVDTLIVWENLDITRYVLKNTVTGEIVIKHLNREQETNQNNFRDSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNNHKRDPSFAE 650
            ARLRMEK HNYVRK AE A Q +++    + NV+GLVLAGSADFKTELSQSDMFD RLQ+K+LK+VD+SYGGENGFNQAIELS E LSNVKFIQEK+LIG+YF+EISQDTGKY FG +DTLKAL+MGAV+ LIV+ENLDI RYVL    T E  I +L  EQE ++++F D  T  E E+ E   LLEWFAN Y++FG TLE VT+  +    F +
Sbjct:  191 ARLRMEKRHNYVRKVAETAVQLFISG--DKVNVAGLVLAGSADFKTELSQSDMFDQRLQSKVLKLVDISYGGENGFNQAIELSTEVLSNVKFIQEKKLIGRYFDEISQDTGKYCFGVEDTLKALEMGAVEILIVYENLDIMRYVLHCQGTEEEKILYLTPEQEKDKSHFTDKETGQEHELIESMPLLEWFANNYKKFGATLEIVTDKSQEGSQFVK 404          
The following BLAST results are available for this feature:
BLAST of FC920757 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
ERF1Z_ARATH1.461e-10783.64Eukaryotic peptide chain release factor subunit 1-... [more]
ERF1Y_ARATH1.031e-10581.31Eukaryotic peptide chain release factor subunit 1-... [more]
ERF1X_ARATH1.767e-10279.44Eukaryotic peptide chain release factor subunit 1-... [more]
ERF1_DROME8.196e-8263.72Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_POLMI1.138e-7768.52Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_CAEEL7.486e-7459.35Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_RAT1.439e-7265.28Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_RABIT1.439e-7265.28Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_MOUSE1.439e-7265.28Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_MESAU1.439e-7265.28Eukaryotic peptide chain release factor subunit 1 ... [more]

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Properties
Property NameValue
Genbank descriptionC32012F08EF RVDevelop1 Citrus clementina cDNA clone C32012F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920757 ID=FC920757; Name=FC920757; organism=Citrus clementina; type=EST; length=738bp
TTGCCCGACTCCGAATGGAGAAGAGCCATAACTATGTGAGGAAAACAGCT
GAACTTGCCACACAGTTTTATCTCAATCCTGCCACTAGCCAACCTAATGT
TTCGGGACTAGTACTTGCTGGATCAGCCGACTTTAAAACTGAGCTTAGTC
AGTCAGATATGTTTGATCCTCGCCTTCAGGCTAAAATTTTGAAAGTAGTA
GATGTTTCTTATGGAGGGGAGAATGGATTTAACCAGGCAATTGAGCTATC
TGCTGAAAGTCTGTCCAATGTGAAGTTTATACAAGAGAAGCGTTTGATAG
GAAAGTATTTTGAAGAGATAAGCCAGGATACTGGGAAGTATGTTTTTGGT
GCTGATGACACGCTGAAAGCTTTGGATATGGGTGCTGTCGACACGCTAAT
TGTTTGGGAAAATTTGGACATTACTAGGTATGTCTTGAAAAATACTGTTA
CTGGTGAGATTGTCATAAAACATTTGAACAGGGAGCAAGAGACCAATCAG
AACAACTTTCGTGATTCTGCCACCTCTGCTGAATTGGAGGTTCAGGAAAA
GTCATCGCTGCTTGAGTGGTTTGCAAATGAATACAGGAGGTTTGGTTGCA
CACTCGAGTTTGTTACCAACAATCACAAGAGGGATCCCAGTTTTGCAGAG
GCTTTGGCGGTATTGGTGGAATACTCCGCTACAGCTTGATATGAGATCAT
TTGATGAAGTTTCTGATGATGGAGAAATTATGATGATT
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