FC920762

Overview
NameFC920762
Unique NameFC920762
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length632
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4005 contig Ccv1_Contig4005:978..1609. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920762 vs. ExPASy Swiss-Prot
Match: ILV5_PEA (Ketol-acid reductoisomerase, chloroplastic OS=Pisum sativum GN=PGAAIR PE=2 SV=1)

HSP 1 Score: 394.43 bits (1012), Expect = 2.474e-109
Identity = 192/210 (91.43%), Postives = 203/210 (96.67%), Query Frame = 2
Query:    2 AVHGSVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRPAGDLGPLHPFTAGVYAALMMAQIEILRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYI 631
            AVHG VESLFRR+TENGM+EDLAYKNTVE ITG+ISK ISTQGMLAVYN+ S + KKEFEKAYSAS+YPCMEILYECYEDVA+GSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRPAGDLGPL+PFTAGV+ A+MMAQIE+LRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYI
Sbjct:  310 AVHGIVESLFRRYTENGMSEDLAYKNTVESITGVISKTISTQGMLAVYNALSEDGKKEFEKAYSASFYPCMEILYECYEDVASGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRPAGDLGPLYPFTAGVFVAMMMAQIEVLRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYI 519          
BLAST of FC920762 vs. ExPASy Swiss-Prot
Match: ILV5_ARATH (Ketol-acid reductoisomerase, chloroplastic OS=Arabidopsis thaliana GN=At3g58610 PE=2 SV=2)

HSP 1 Score: 390.193 bits (1001), Expect = 4.665e-108
Identity = 191/210 (90.95%), Postives = 199/210 (94.76%), Query Frame = 2
Query:    2 AVHGSVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRPAGDLGPLHPFTAGVYAALMMAQIEILRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYI 631
            AVHG VESLFRR+TENGM+EDLAYKNTVECITG IS+ ISTQGMLAVYNS S E KK+FE AYSAS+YPCMEILYECYEDV +GSEIRSVVLAGRRFYEKEGLPAFPMG IDQTRMWKVGERVR +RPAGDLGPL+PFTAGVY ALMMAQIEILRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYI
Sbjct:  320 AVHGIVESLFRRYTENGMSEDLAYKNTVECITGTISRTISTQGMLAVYNSLSEEGKKDFETAYSASFYPCMEILYECYEDVQSGSEIRSVVLAGRRFYEKEGLPAFPMGNIDQTRMWKVGERVRKSRPAGDLGPLYPFTAGVYVALMMAQIEILRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYI 529          
BLAST of FC920762 vs. ExPASy Swiss-Prot
Match: ILV5_SPIOL (Ketol-acid reductoisomerase, chloroplastic OS=Spinacia oleracea GN=AHRI PE=1 SV=1)

HSP 1 Score: 384.415 bits (986), Expect = 2.560e-106
Identity = 187/210 (89.05%), Postives = 200/210 (95.24%), Query Frame = 2
Query:    2 AVHGSVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRPAGDLGPLHPFTAGVYAALMMAQIEILRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYI 631
            AVHG VE LFRR+TE+GM+EDLAYKNTVECITG+ISK IST+GMLA+YNS S E KK+F+ AYSASYYP M+ILYECYEDVA+GSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGE+VRS RPAGDLGPL+PFTAGVY ALMMAQIEILRKKGHSYSEIINESVIE+VDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYI
Sbjct:  326 AVHGIVECLFRRYTESGMSEDLAYKNTVECITGVISKTISTKGMLALYNSLSEEGKKDFQAAYSASYYPSMDILYECYEDVASGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGEKVRSVRPAGDLGPLYPFTAGVYVALMMAQIEILRKKGHSYSEIINESVIEAVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYI 535          
BLAST of FC920762 vs. ExPASy Swiss-Prot
Match: ILV5_ORYSJ (Ketol-acid reductoisomerase, chloroplastic OS=Oryza sativa subsp. japonica GN=Os05g0573700 PE=1 SV=1)

HSP 1 Score: 376.711 bits (966), Expect = 5.338e-104
Identity = 183/210 (87.14%), Postives = 196/210 (93.33%), Query Frame = 2
Query:    2 AVHGSVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRPAGDLGPLHPFTAGVYAALMMAQIEILRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYI 631
            AVHG VE+LFRR+TE GM+E++AYKNTVE ITGIISK IS +GML VYNS + E KKEF KAYSAS+YPCM+ILYECYEDVA+GSEIRSVVLAGRRFYEKEGLPAFPMG IDQTRMWKVGE+VRSTRP  DLGPLHPFTAGVY ALMMAQIE+LRKKGHSYSEIINESVIESVDSLNPFMHARGV+FMVDNCSTTARLGSRKWAPRFDYI
Sbjct:  308 AVHGIVEALFRRYTEQGMDEEMAYKNTVEGITGIISKTISKKGMLEVYNSLTEEGKKEFNKAYSASFYPCMDILYECYEDVASGSEIRSVVLAGRRFYEKEGLPAFPMGNIDQTRMWKVGEKVRSTRPENDLGPLHPFTAGVYVALMMAQIEVLRKKGHSYSEIINESVIESVDSLNPFMHARGVAFMVDNCSTTARLGSRKWAPRFDYI 517          
BLAST of FC920762 vs. ExPASy Swiss-Prot
Match: ILV5_NEUCR (Ketol-acid reductoisomerase, mitochondrial OS=Neurospora crassa GN=ilv-2 PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 4.061e-11
Identity = 31/62 (50.00%), Postives = 43/62 (69.35%), Query Frame = 2
Query:  437 LMMAQIEILRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRF 622
            + +AQ E+LR++GHS SE  NE+V E+  SL P + A G+ +M D CSTTAR G+  W P+F
Sbjct:  276 MFLAQYEVLRERGHSPSEAFNETVEEATQSLYPLIGAHGMDWMFDACSTTARRGAIDWTPKF 337          
The following BLAST results are available for this feature:
BLAST of FC920762 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
ILV5_PEA2.474e-10991.43Ketol-acid reductoisomerase, chloroplastic OS=Pisu... [more]
ILV5_ARATH4.665e-10890.95Ketol-acid reductoisomerase, chloroplastic OS=Arab... [more]
ILV5_SPIOL2.560e-10689.05Ketol-acid reductoisomerase, chloroplastic OS=Spin... [more]
ILV5_ORYSJ5.338e-10487.14Ketol-acid reductoisomerase, chloroplastic OS=Oryz... [more]
ILV5_NEUCR4.061e-1150.00Ketol-acid reductoisomerase, mitochondrial OS=Neur... [more]
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Properties
Property NameValue
Genbank descriptionC32012G02EF RVDevelop1 Citrus clementina cDNA clone C32012G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920762 ID=FC920762; Name=FC920762; organism=Citrus clementina; type=EST; length=632bp
TGCTGTTCATGGATCTGTGGAATCCTTGTTTAGAAGGTTCACTGAAAATG
GAATGAATGAGGATCTGGCTTACAAGAATACCGTGGAGTGCATAACAGGA
ATTATATCAAAGATCATCTCAACTCAGGGTATGTTGGCTGTCTACAATTC
CTTCTCTGGAGAAGACAAAAAGGAATTCGAGAAAGCTTATAGTGCCTCAT
ATTATCCGTGCATGGAAATCTTATATGAGTGCTATGAAGATGTGGCCGCT
GGCAGTGAGATCCGCAGTGTTGTCTTGGCTGGACGTCGGTTTTATGAAAA
GGAAGGTCTACCAGCTTTCCCTATGGGAAAAATTGATCAGACTCGCATGT
GGAAAGTTGGTGAGCGAGTCCGATCAACACGTCCAGCAGGTGACTTAGGC
CCATTACACCCATTCACAGCAGGTGTTTATGCGGCTCTGATGATGGCCCA
GATTGAGATCCTGAGGAAGAAAGGGCACTCCTATTCTGAGATCATCAATG
AAAGTGTGATTGAGTCAGTGGATTCATTGAATCCATTCATGCATGCTCGT
GGAGTTTCATTTATGGTGGACAACTGCTCTACCACAGCCCGTTTGGGATC
AAGGAAATGGGCCCCTCGTTTTGATTACATCT
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