FC920764

Overview
NameFC920764
Unique NameFC920764
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920764 vs. ExPASy Swiss-Prot
Match: UTP18_ARATH (U3 small nucleolar RNA-associated protein 18 homolog OS=Arabidopsis thaliana GN=At5g14050 PE=1 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.859e-35
Identity = 90/207 (43.48%), Postives = 119/207 (57.49%), Query Frame = 2
Query:   89 ISQNA-----VSRNRLKTKTEDGEGPLAVEENKDVEDGKESDLETSXXXXXXXXXXXXXXXXQVKEMKKLENILFGSLYAPVEFGKEDEEKVQPEAETGSAVYFVDPSANSMLSVNEEDAQFSGESDDEEEAW-----QKKPVWVDEEEEQTNVNIANVNRLRKLRKEEDESLISGAEYVSRLXAQHVKLNPGTEWAQLDSRSRDND 679
            +SQNA     + R  LK + ED E    +  + D+  GK    E                  ++ EMKKLEN++FGSLY+PV FGKE+EE        GSA++ VD SA   +   E+D     E  DEE        + +  W DEEE+Q NV+IA+VNRLRKLRKEE+E LISG+EY++RL A H KLNPGT+WA+ DS+  D +
Sbjct:    3 LSQNAPKSKGIKREELKKQYEDVEDEEEIGSDDDLTRGKRRKTEKEKQKLEES---------ELVEMKKLENLIFGSLYSPVTFGKEEEED-------GSALFHVDRSAVRQIPDYEDDGDDDEELSDEENGQVVAIRKGEAAWEDEEEKQINVDIASVNRLRKLRKEENEGLISGSEYIARLRAHHAKLNPGTDWARPDSQIVDGE 193          
The following BLAST results are available for this feature:
BLAST of FC920764 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
UTP18_ARATH2.859e-3543.48U3 small nucleolar RNA-associated protein 18 homol... [more]
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Properties
Property NameValue
Genbank descriptionC32012G04EF RVDevelop1 Citrus clementina cDNA clone C32012G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920764 ID=FC920764; Name=FC920764; organism=Citrus clementina; type=EST; length=699bp
GAGGGGAAGCGATACTCTTACTCGCCGTCGTTGCTTTCACCACCAGGCGA
CTCAAGAAGCAGACCTTATTTCCCCAAAAATGAGTTTGATATCTCAAAAT
GCTGTTTCTAGAAATAGATTAAAGACAAAAACAGAGGACGGTGAGGGGCC
TTTGGCTGTGGAAGAGAACAAAGATGTAGAGGATGGAAAAGAGTCCGACT
TGGAAACATCACGGGCTAAGAAGAGAAAGAGAGAAAAGGAAAAACGAAGC
GAAATGGAGCAAGTGAAGGAAATGAAAAAGTTGGAGAACATTTTGTTTGG
ATCACTTTATGCTCCTGTTGAATTTGGGAAGGAAGATGAGGAAAAGGTCC
AACCTGAAGCCGAGACTGGTTCTGCCGTGTACTTTGTCGACCCTTCTGCT
AATAGCATGTTGTCTGTTAATGAAGAGGATGCACAATTTTCAGGGGAAAG
TGACGACGAAGAGGAAGCTTGGCAAAAGAAACCGGTCTGGGTGGATGAGG
AAGAGGAACAGACCAATGTAAATATAGCTAACGTTAACAGATTGAGGAAG
CTGAGGAAGGAAGAGGATGAGAGTTTGATTTCAGGTGCAGAGTATGTTTC
AAGACTGANGGCTCAGCATGTTAAGTTGAACCCTGGTACGGAATGGGCTC
AACTCGATTCACGGTCAAGGGATAATGACCCTTATAATGAATCATCGGA
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