FC920768

Overview
NameFC920768
Unique NameFC920768
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length728
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12898 contig Ccv1_Contig12898:685..1413. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920768 vs. ExPASy Swiss-Prot
Match: ETFB_ARATH (Electron transfer flavoprotein subunit beta, mitochondrial OS=Arabidopsis thaliana GN=ETFB PE=1 SV=1)

HSP 1 Score: 338.191 bits (866), Expect = 2.725e-92
Identity = 168/204 (82.35%), Postives = 184/204 (90.20%), Query Frame = 1
Query:   28 MKIMVAIKRVVDYAVKIRVKSDRTGVETNNVKMSMNPFCEIALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQGTFASKVVLDKEKQLAMVEREVDGGLETLELDLPAVITTDLRLNQPRYATLPNIMKAKSKPIKNI 639
            MKI+VA+KRVVDYAVKIRVK D+TGVET NVKMSMNPFCEIALEEALRIKE+G A EV+AVS+GP+QCVDTLRTGLAMGADRG+HVE      PLT+AKILKSL +VE PGLI LGKQAIDDDCNQTGQMVA LL WPQ TFASKVVLDK+K +A V+REVDGGLETL +DLPAVITTDLRLNQPRYA+LPNIMKAKSKPIK +
Sbjct:    1 MKILVAVKRVVDYAVKIRVKPDKTGVETQNVKMSMNPFCEIALEEALRIKEAGFAKEVIAVSIGPSQCVDTLRTGLAMGADRGIHVETNSIFLPLTIAKILKSLADVENPGLIFLGKQAIDDDCNQTGQMVAALLGWPQATFASKVVLDKDKNVATVDREVDGGLETLNVDLPAVITTDLRLNQPRYASLPNIMKAKSKPIKKM 204          
BLAST of FC920768 vs. ExPASy Swiss-Prot
Match: ETFB_ORYSJ (Electron transfer flavoprotein subunit beta, mitochondrial OS=Oryza sativa subsp. japonica GN=ETFB PE=3 SV=1)

HSP 1 Score: 308.916 bits (790), Expect = 1.770e-83
Identity = 158/210 (75.24%), Postives = 182/210 (86.67%), Query Frame = 1
Query:   28 MKIMVAIKRVVDYAVKIRVKSDRTGVETNNVKMSMNPFCEIALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHV----EAAGQLYPLTVAKILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQGTFASKVVLDKEKQLAMVEREVDGGLETLELDLPAVITTDLRLNQPRYATLPNIMKAKSKPIKNILP 645
            MKI+VA+KRVVDYAVK+RV+ DRTGVET +VKMSMNPFCEIA+EEALR++ESG A+EVVA ++GP+Q  DTLRT LAMGADR VHV    + +  L PL VAKIL++L   E PGL+ILGKQAIDDDCNQTGQM+AGLL+WPQGTFASKV+L+KEK  A VEREVDGG+ET+ LDLPAVITTDLRLNQPRYATLPNIMKAKSK IK + P
Sbjct:    1 MKILVAVKRVVDYAVKVRVRPDRTGVETASVKMSMNPFCEIAVEEALRLRESGAATEVVAATVGPSQSADTLRTALAMGADRAVHVLHDPDPSRPLLPLAVAKILRALALQENPGLVILGKQAIDDDCNQTGQMLAGLLNWPQGTFASKVILNKEK--ATVEREVDGGIETISLDLPAVITTDLRLNQPRYATLPNIMKAKSKVIKKVTP 208          
BLAST of FC920768 vs. ExPASy Swiss-Prot
Match: ETFB_ORYSI (Electron transfer flavoprotein subunit beta, mitochondrial OS=Oryza sativa subsp. indica GN=ETFB PE=3 SV=1)

HSP 1 Score: 307.76 bits (787), Expect = 3.944e-83
Identity = 157/210 (74.76%), Postives = 182/210 (86.67%), Query Frame = 1
Query:   28 MKIMVAIKRVVDYAVKIRVKSDRTGVETNNVKMSMNPFCEIALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHV----EAAGQLYPLTVAKILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQGTFASKVVLDKEKQLAMVEREVDGGLETLELDLPAVITTDLRLNQPRYATLPNIMKAKSKPIKNILP 645
            MKI+VA+KRVVDYAVK+RV+ DRTGVET +VKMSMNPFCEIA+EEALR++E+G A+EVVA ++GP+Q  DTLRT LAMGADR VHV    + +  L PL VAKIL++L   E PGL+ILGKQAIDDDCNQTGQM+AGLL+WPQGTFASKV+L+KEK  A VEREVDGG+ET+ LDLPAVITTDLRLNQPRYATLPNIMKAKSK IK + P
Sbjct:    1 MKILVAVKRVVDYAVKVRVRPDRTGVETASVKMSMNPFCEIAVEEALRLREAGAATEVVAATVGPSQSADTLRTALAMGADRAVHVLHDPDPSRPLLPLAVAKILRALALQENPGLVILGKQAIDDDCNQTGQMLAGLLNWPQGTFASKVILNKEK--ATVEREVDGGIETISLDLPAVITTDLRLNQPRYATLPNIMKAKSKVIKKVTP 208          
BLAST of FC920768 vs. ExPASy Swiss-Prot
Match: ETFB_HUMAN (Electron transfer flavoprotein subunit beta OS=Homo sapiens GN=ETFB PE=1 SV=3)

HSP 1 Score: 285.034 bits (728), Expect = 2.738e-76
Identity = 145/212 (68.40%), Postives = 171/212 (80.66%), Query Frame = 1
Query:   22 AEMKIMVAIKRVVDYAVKIRVKSDRTGVETNNVKMSMNPFCEIALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEA----AGQLYPLTVAKILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQGTFASKVVLDKEKQLAMVEREVDGGLETLELDLPAVITTDLRLNQPRYATLPNIMKAKSKPIKNILP 645
            AE++++VA+KRV+DYAVKIRVK DRTGV T+ VK SMNPFCEIA+EEA+R+KE  L  EV+AVS GPAQC +T+RT LAMGADRG+HVE     A +L PL VA++L  L E EK  L++LGKQAIDDDCNQTGQM AG L WPQGTFAS+V L+ +K    VERE+DGGLETL L LPAV+T DLRLN+PRYATLPNIMKAK K I+ I P
Sbjct:    2 AELRVLVAVKRVIDYAVKIRVKPDRTGVVTDGVKHSMNPFCEIAVEEAVRLKEKKLVKEVIAVSCGPAQCQETIRTALAMGADRGIHVEVPPAEAERLGPLQVARVLAKLAEKEKVDLVLLGKQAIDDDCNQTGQMTAGFLDWPQGTFASQVTLEGDK--LKVEREIDGGLETLRLKLPAVVTADLRLNEPRYATLPNIMKAKKKKIEVIKP 211          
BLAST of FC920768 vs. ExPASy Swiss-Prot
Match: ETFB_PONAB (Electron transfer flavoprotein subunit beta OS=Pongo abelii GN=ETFB PE=2 SV=3)

HSP 1 Score: 283.493 bits (724), Expect = 7.965e-76
Identity = 145/212 (68.40%), Postives = 170/212 (80.19%), Query Frame = 1
Query:   22 AEMKIMVAIKRVVDYAVKIRVKSDRTGVETNNVKMSMNPFCEIALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEA----AGQLYPLTVAKILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQGTFASKVVLDKEKQLAMVEREVDGGLETLELDLPAVITTDLRLNQPRYATLPNIMKAKSKPIKNILP 645
            AE++ +VA+KRV+DYAVKIRVK DRTGV T+ VK SMNPFCEIA+EEA+R+KE  L  EV+AVS GPAQC +T+RT LAMGADRG+HVE     A +L PL VA++L  L E EK  L++LGKQAIDDDCNQTGQM AG L WPQGTFAS+V L+ +K    VERE+DGGLETL L LPAV+T DLRLN+PRYATLPNIMKAK K I+ I P
Sbjct:    2 AELRALVAVKRVIDYAVKIRVKPDRTGVVTDGVKHSMNPFCEIAVEEAVRLKEKKLVKEVIAVSCGPAQCQETIRTALAMGADRGIHVEVPPAEAERLGPLQVARVLAKLAEKEKVDLVLLGKQAIDDDCNQTGQMTAGFLDWPQGTFASQVTLEGDK--LKVEREIDGGLETLRLKLPAVVTADLRLNEPRYATLPNIMKAKKKKIEVIKP 211          
BLAST of FC920768 vs. ExPASy Swiss-Prot
Match: ETFB_DICDI (Electron transfer flavoprotein subunit beta OS=Dictyostelium discoideum GN=etfb PE=3 SV=1)

HSP 1 Score: 273.863 bits (699), Expect = 4.530e-75
Identity = 139/208 (66.83%), Postives = 166/208 (79.81%), Query Frame = 1
Query:   28 MKIMVAIKRVVDYAVKIRVKSDRTGVETNNVKMSMNPFCEIALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQGTFASKVVLDKEKQLAMVEREVDGGLETLELDLPAVITTDLRLNQPRYATLPNIMKAKSKPIKNILPRS 651
            +KI+V IKRVVDYAVKIRVK D++GVET NVKMSMNPF EIA+EEA+RIKE  LA E++AVSMGP    +T+RT +AMGAD+G+HVE   +L PL+VAK+LK LV+ EKP LIILGKQAIDDDCNQT QM+AGLL+WPQ TFASKV  D +     V RE+DGGLETL + LPA+I+ DLRLN+PRYA L NIMK+K   +K   P S
Sbjct:    3 LKILVPIKRVVDYAVKIRVKGDKSGVETANVKMSMNPFDEIAVEEAIRIKEKNLAKEIIAVSMGPKTSQETIRTAIAMGADKGIHVETTAELQPLSVAKLLKELVDKEKPNLIILGKQAIDDDCNQTAQMLAGLLNWPQATFASKV--DIKDDSVHVTREIDGGLETLSMKLPAIISCDLRLNEPRYAKLQNIMKSKKAELKVETPES 208          

HSP 2 Score: 29.261 bits (64), Expect = 4.530e-75
Identity = 12/28 (42.86%), Postives = 19/28 (67.86%), Query Frame = 3
Query:  630 KEYTPQELNVDVKSDLEVIQVQNLPEKS 713
            K  TP+ LNVD   +L++I V+  P++S
Sbjct:  202 KVETPESLNVDTNCNLKIISVEEPPKRS 229          
BLAST of FC920768 vs. ExPASy Swiss-Prot
Match: ETFB_BOVIN (Electron transfer flavoprotein subunit beta OS=Bos taurus GN=ETFB PE=2 SV=3)

HSP 1 Score: 278.87 bits (712), Expect = 1.962e-74
Identity = 141/210 (67.14%), Postives = 168/210 (80.00%), Query Frame = 1
Query:   22 AEMKIMVAIKRVVDYAVKIRVKSDRTGVETNNVKMSMNPFCEIALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEA----AGQLYPLTVAKILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQGTFASKVVLDKEKQLAMVEREVDGGLETLELDLPAVITTDLRLNQPRYATLPNIMKAKSKPIKNI 639
            AE++ +VA+KRV+D+AVKIRVK D+TGV T+ VK SMNPFCEIA+EEA+R+KE  L  E++AVS GPAQC +T+RT LAMGADRG+HVE     A  L PL VA++L  L E EK  L++LGKQAIDDDCNQTGQM AG L WPQGTFAS+V L+ +K    VERE+DGGLETL L LPAV+T DLRLN+PRYATLPNIMKAK K I+ I
Sbjct:    2 AELRALVAVKRVIDFAVKIRVKPDKTGVVTDGVKHSMNPFCEIAVEEAVRLKEKKLVKEIIAVSCGPAQCQETIRTALAMGADRGIHVEVPAAEANHLGPLQVARVLAKLAEKEKVDLVLLGKQAIDDDCNQTGQMTAGFLDWPQGTFASQVTLEGDK--IKVEREIDGGLETLRLKLPAVVTADLRLNEPRYATLPNIMKAKKKKIEVI 209          
BLAST of FC920768 vs. ExPASy Swiss-Prot
Match: ETFB_PIG (Electron transfer flavoprotein subunit beta OS=Sus scrofa GN=ETFB PE=2 SV=3)

HSP 1 Score: 276.559 bits (706), Expect = 9.737e-74
Identity = 141/210 (67.14%), Postives = 167/210 (79.52%), Query Frame = 1
Query:   22 AEMKIMVAIKRVVDYAVKIRVKSDRTGVETNNVKMSMNPFCEIALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEA----AGQLYPLTVAKILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQGTFASKVVLDKEKQLAMVEREVDGGLETLELDLPAVITTDLRLNQPRYATLPNIMKAKSKPIKNI 639
            AE++ +VA+KRV+D+AVKIRVK DRTGV  + VK SMNPFCEIA+EEA+R+KE  L  EV+AVS GPAQC +T+RT LAMGADRG+HVE     A  L PL VA++L  L + EK  L++LGKQAIDDDCNQTGQM AG L WPQGTFAS+V L+ +K    VERE+DGGLETL L LPAV+T DLRLN+PRYATLPNIMKAK K I+ I
Sbjct:    2 AELRALVAVKRVIDFAVKIRVKPDRTGVVMDGVKHSMNPFCEIAVEEAVRLKEKKLVKEVIAVSCGPAQCQETIRTALAMGADRGIHVEVPAAEAHHLGPLQVARVLAKLAQKEKVDLVLLGKQAIDDDCNQTGQMTAGFLDWPQGTFASQVTLEGDK--VKVEREIDGGLETLRLKLPAVVTADLRLNEPRYATLPNIMKAKKKKIEVI 209          
BLAST of FC920768 vs. ExPASy Swiss-Prot
Match: ETFB_MOUSE (Electron transfer flavoprotein subunit beta OS=Mus musculus GN=Etfb PE=1 SV=3)

HSP 1 Score: 276.559 bits (706), Expect = 9.737e-74
Identity = 139/208 (66.83%), Postives = 167/208 (80.29%), Query Frame = 1
Query:   22 AEMKIMVAIKRVVDYAVKIRVKSDRTGVETNNVKMSMNPFCEIALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAG----QLYPLTVAKILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQGTFASKVVLDKEKQLAMVEREVDGGLETLELDLPAVITTDLRLNQPRYATLPNIMKAKSKPIK 633
            AE++ +VA+KRV+D+AVKIRVK D++GV T+ VK SMNPFCEIA+EEA+R+KE  L  E++AVS GP+QC +T+RT LAMGADRG+HVE  G     L PL VA++L  L E EK  L+ LGKQAIDDDCNQTGQM AGLL WPQGTFAS+V L+ +K    VERE+DGGLETL L LPAV+T DLRLN+PRYATLPNIMKAK K I+
Sbjct:    2 AELRALVAVKRVIDFAVKIRVKPDKSGVVTDGVKHSMNPFCEIAVEEAVRLKEKKLVKEIIAVSCGPSQCQETIRTALAMGADRGIHVEIPGAQAESLGPLQVARVLAKLAEKEKVDLLFLGKQAIDDDCNQTGQMTAGLLDWPQGTFASQVTLEGDK--VKVEREIDGGLETLRLKLPAVVTADLRLNEPRYATLPNIMKAKKKKIE 207          
BLAST of FC920768 vs. ExPASy Swiss-Prot
Match: ETFB_RAT (Electron transfer flavoprotein subunit beta OS=Rattus norvegicus GN=Etfb PE=2 SV=3)

HSP 1 Score: 275.789 bits (704), Expect = 1.661e-73
Identity = 139/210 (66.19%), Postives = 167/210 (79.52%), Query Frame = 1
Query:   22 AEMKIMVAIKRVVDYAVKIRVKSDRTGVETNNVKMSMNPFCEIALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAG----QLYPLTVAKILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQGTFASKVVLDKEKQLAMVEREVDGGLETLELDLPAVITTDLRLNQPRYATLPNIMKAKSKPIKNI 639
            AE++ +VA+KRV+D+AVKIRVK D++GV T+ VK SMNPFCEIA+EEA+R+KE  L  E++AVS GP QC +T+RT LAMGADRG+HVE  G     L PL VA++L  L E EK  L+ LGKQAIDDDCNQTGQM AGLL WPQGTFAS+V L+ +K    VERE+DGGLET+ L LPAV+T DLRLN+PRYATLPNIMKAK K I+ I
Sbjct:    2 AELRALVAVKRVIDFAVKIRVKPDKSGVVTDGVKHSMNPFCEIAVEEAVRLKEKKLVKEIIAVSCGPPQCQETIRTALAMGADRGIHVEVPGAEAENLGPLQVARVLAKLAEKEKVDLLFLGKQAIDDDCNQTGQMTAGLLDWPQGTFASQVTLEGDK--VKVEREIDGGLETIRLKLPAVVTADLRLNEPRYATLPNIMKAKKKKIEVI 209          
The following BLAST results are available for this feature:
BLAST of FC920768 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
ETFB_ARATH2.725e-9282.35Electron transfer flavoprotein subunit beta, mitoc... [more]
ETFB_ORYSJ1.770e-8375.24Electron transfer flavoprotein subunit beta, mitoc... [more]
ETFB_ORYSI3.944e-8374.76Electron transfer flavoprotein subunit beta, mitoc... [more]
ETFB_HUMAN2.738e-7668.40Electron transfer flavoprotein subunit beta OS=Hom... [more]
ETFB_PONAB7.965e-7668.40Electron transfer flavoprotein subunit beta OS=Pon... [more]
ETFB_DICDI4.530e-7566.83Electron transfer flavoprotein subunit beta OS=Dic... [more]
ETFB_BOVIN1.962e-7467.14Electron transfer flavoprotein subunit beta OS=Bos... [more]
ETFB_PIG9.737e-7467.14Electron transfer flavoprotein subunit beta OS=Sus... [more]
ETFB_MOUSE9.737e-7466.83Electron transfer flavoprotein subunit beta OS=Mus... [more]
ETFB_RAT1.661e-7366.19Electron transfer flavoprotein subunit beta OS=Rat... [more]

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Properties
Property NameValue
Genbank descriptionC32012G10EF RVDevelop1 Citrus clementina cDNA clone C32012G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920768 ID=FC920768; Name=FC920768; organism=Citrus clementina; type=EST; length=728bp
AGTATCATCGGCATCACGGCAGCCGAAATGAAGATAATGGTGGCAATAAA
GCGAGTCGTTGACTACGCCGTCAAGATCAGGGTGAAATCCGACAGGACAG
GAGTGGAGACAAACAACGTTAAGATGTCGATGAACCCCTTTTGCGAGATA
GCGCTGGAGGAGGCTCTGAGGATCAAGGAATCTGGATTGGCTTCCGAGGT
TGTCGCCGTCAGCATGGGCCCCGCCCAGTGCGTTGATACTCTACGGACGG
GTTTAGCTATGGGTGCTGATAGAGGAGTCCACGTGGAGGCTGCCGGTCAG
CTGTATCCTTTGACTGTTGCCAAGATTTTGAAGAGCCTTGTTGAGGTTGA
GAAGCCTGGCTTGATTATTCTGGGAAAGCAGGCAATTGATGATGACTGCA
ATCAAACAGGGCAAATGGTTGCAGGGCTACTCAGCTGGCCGCAGGGAACC
TTTGCTTCTAAGGTTGTGCTGGATAAGGAAAAACAATTAGCAATGGTGGA
GAGAGAAGTAGATGGTGGTCTTGAGACTTTAGAATTGGATTTACCAGCTG
TAATCACCACTGATTTGAGACTCAACCAACCGAGGTACGCGACACTCCCC
AACATAATGAAGGCAAAATCGAAACCAATAAAGAATATACTCCCCAGGAG
CTAAACGTGGATGTCAAATCTGATTTGGAGGTGATTCAAGTACAGAACCT
CCCAGAGAAAAGCTGGGTTATATTATCT
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