FC920772

Overview
NameFC920772
Unique NameFC920772
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length608
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10263 contig Ccv1_Contig10263:2..609. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920772 vs. ExPASy Swiss-Prot
Match: GRP1_DAUCA (Glycine-rich RNA-binding protein OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 6.885e-21
Identity = 48/51 (94.12%), Postives = 50/51 (98.04%), Query Frame = 2
Query:  455 QIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQSRG 607
            +IINDRETGRSRGFGFVTF+DEKSMRDAIEGMNGQ LDGRNITVNEAQSRG
Sbjct:   36 KIINDRETGRSRGFGFVTFKDEKSMRDAIEGMNGQELDGRNITVNEAQSRG 86          
BLAST of FC920772 vs. ExPASy Swiss-Prot
Match: GRP2_SINAL (Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.463e-20
Identity = 46/51 (90.20%), Postives = 51/51 (100.00%), Query Frame = 2
Query:  455 QIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQSRG 607
            +IINDRETGRSRGFGFVTF+DEKSM+DAIEGMNGQ+LDGR+ITVNEAQSRG
Sbjct:   38 KIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVNEAQSRG 88          
BLAST of FC920772 vs. ExPASy Swiss-Prot
Match: GRP1_SINAL (Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.463e-20
Identity = 46/51 (90.20%), Postives = 51/51 (100.00%), Query Frame = 2
Query:  455 QIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQSRG 607
            +IINDRETGRSRGFGFVTF+DEKSM+DAIEGMNGQ+LDGR+ITVNEAQSRG
Sbjct:   38 KIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVNEAQSRG 88          
BLAST of FC920772 vs. ExPASy Swiss-Prot
Match: GRP7_ARATH (Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana GN=GRP7 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 9.941e-20
Identity = 45/51 (88.24%), Postives = 51/51 (100.00%), Query Frame = 2
Query:  455 QIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQSRG 607
            +IINDRETGRSRGFGFVTF+DEK+M+DAIEGMNGQ+LDGR+ITVNEAQSRG
Sbjct:   38 KIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEAQSRG 88          
BLAST of FC920772 vs. ExPASy Swiss-Prot
Match: GRP10_BRANA (Glycine-rich RNA-binding protein 10 OS=Brassica napus GN=GRP10 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.177e-18
Identity = 43/51 (84.31%), Postives = 48/51 (94.12%), Query Frame = 2
Query:  455 QIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQSRG 607
            +IINDRETGRSRGFGFVTF+DEKSM+DAI+ MNG+ LDGR ITVNEAQSRG
Sbjct:   36 KIINDRETGRSRGFGFVTFKDEKSMKDAIDEMNGKELDGRTITVNEAQSRG 86          
BLAST of FC920772 vs. ExPASy Swiss-Prot
Match: GRP8_ARATH (Glycine-rich RNA-binding protein 8 OS=Arabidopsis thaliana GN=GRP8 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.215e-17
Identity = 43/51 (84.31%), Postives = 48/51 (94.12%), Query Frame = 2
Query:  455 QIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQSRG 607
            +IINDRE+GRSRGFGFVTF+DEK+MRDAIE MNG+ LDGR ITVNEAQSRG
Sbjct:   36 KIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEAQSRG 86          
BLAST of FC920772 vs. ExPASy Swiss-Prot
Match: GRP2_SORBI (Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor GN=GRP2 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.993e-16
Identity = 40/51 (78.43%), Postives = 45/51 (88.24%), Query Frame = 2
Query:  455 QIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQSRG 607
            ++I DRETGRSRGFGFVTF  E+SM DAIE MNG+ LDGRNITVN+AQSRG
Sbjct:   38 KVITDRETGRSRGFGFVTFSSEQSMLDAIENMNGKELDGRNITVNQAQSRG 88          
BLAST of FC920772 vs. ExPASy Swiss-Prot
Match: GRPA_MAIZE (Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea mays GN=RAB15 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.909e-16
Identity = 40/51 (78.43%), Postives = 44/51 (86.27%), Query Frame = 2
Query:  455 QIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQSRG 607
            ++I DRETGRSRGFGFVTF  E SM DAIE MNG+ LDGRNITVN+AQSRG
Sbjct:   38 KVITDRETGRSRGFGFVTFSSENSMLDAIENMNGKELDGRNITVNQAQSRG 88          
BLAST of FC920772 vs. ExPASy Swiss-Prot
Match: GRP_HORVU (Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare GN=blt801 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.106e-16
Identity = 40/50 (80.00%), Postives = 45/50 (90.00%), Query Frame = 2
Query:  455 QIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQSR 604
            +II DRETGRSRGFGFVTF  +++MR AIE MNGQ+LDGRNITVNEAQSR
Sbjct:   36 KIITDRETGRSRGFGFVTFASDEAMRQAIEAMNGQDLDGRNITVNEAQSR 85          
BLAST of FC920772 vs. ExPASy Swiss-Prot
Match: GRP1_SORBI (Glycine-rich RNA-binding protein 1 (Fragment) OS=Sorghum bicolor GN=GRP1 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 8.709e-16
Identity = 41/51 (80.39%), Postives = 45/51 (88.24%), Query Frame = 2
Query:  455 QIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQSRG 607
            +II DRET RSRGFGFVTF  E++MR AIEGMNG+ LDGRNITVNEAQSRG
Sbjct:   17 KIILDRETQRSRGFGFVTFSTEEAMRSAIEGMNGKELDGRNITVNEAQSRG 67          
The following BLAST results are available for this feature:
BLAST of FC920772 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
GRP1_DAUCA6.885e-2194.12Glycine-rich RNA-binding protein OS=Daucus carota ... [more]
GRP2_SINAL4.463e-2090.20Glycine-rich RNA-binding protein GRP2A OS=Sinapis ... [more]
GRP1_SINAL4.463e-2090.20Glycine-rich RNA-binding protein GRP1A OS=Sinapis ... [more]
GRP7_ARATH9.941e-2088.24Glycine-rich RNA-binding protein 7 OS=Arabidopsis ... [more]
GRP10_BRANA4.177e-1884.31Glycine-rich RNA-binding protein 10 OS=Brassica na... [more]
GRP8_ARATH1.215e-1784.31Glycine-rich RNA-binding protein 8 OS=Arabidopsis ... [more]
GRP2_SORBI2.993e-1678.43Glycine-rich RNA-binding protein 2 OS=Sorghum bico... [more]
GRPA_MAIZE3.909e-1678.43Glycine-rich RNA-binding, abscisic acid-inducible ... [more]
GRP_HORVU5.106e-1680.00Glycine-rich RNA-binding protein blt801 OS=Hordeum... [more]
GRP1_SORBI8.709e-1680.39Glycine-rich RNA-binding protein 1 (Fragment) OS=S... [more]

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Properties
Property NameValue
Genbank descriptionC32012H02EF RVDevelop1 Citrus clementina cDNA clone C32012H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920772 ID=FC920772; Name=FC920772; organism=Citrus clementina; type=EST; length=608bp
GATCCCGCAGCGGTGCTGTCTCCTAGATTTTTCTTGTAATTCCTTCTTAG
TCCCCATTTCAAGTTTTCTCCTAATGGCTTCAGCCGATGTCGAGTTTCGG
TGCTTCGTAGGCGGCCTGGCCTGGGCCACCACTGACAGCTCTCTCCATGA
GGCCTTCAGTGCTTACGGCGATATCCTTGAATCGAAGGTCCGTTTGAACC
AGATCCGACCCGATCCACGATTCGGCTTGTTCTGATCTGTGATTCGTGTG
CTCTGTGATCTGTTTCTGTTACTCTGTTACTGTTCTCTGTTACTACTGTT
ACTCTATTATTACTATGCCTAAATCGGTACGTTCATCTTCATCTTTTTAT
TAAGACGAAGGGCCCGATCGGATTTATTATTATTTTTATTGTTATTAAGT
TTCCAGATCTGAGATGAATTTGCTAAATTATTTTTTTGTTTATCCTCGTT
AATTCAGATTATTAACGATCGCGAGACTGGAAGATCCAGAGGATTTGGAT
TCGTTACCTTCCGCGATGAGAAGTCGATGAGGGACGCAATCGAAGGCATG
AACGGCCAGAATCTGGACGGCCGTAACATAACAGTCAACGAGGCCCAGTC
CCGTGGAA
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